Wall clock time and date at job start Tue Mar 31 2020 03:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47098 * 60.00416 * 8 6 4 10 10 H 1.48504 * 109.46649 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47435 * 300.00203 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.35346 * 126.91613 * 94.68097 * 19 18 17 21 21 N 1.33774 * 106.49744 * 179.90807 * 20 19 18 22 22 N 1.28627 * 108.88294 * 0.36691 * 21 20 19 23 23 N 1.28720 * 110.18510 * 359.77061 * 22 21 20 24 24 C 1.46496 * 125.87118 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 26 26 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 27 27 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 28 28 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 29 29 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 30 30 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 32 32 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 33 33 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 34 34 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 35 35 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 36 36 H 1.00899 * 110.99633 * 303.95531 * 17 16 13 37 37 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 38 38 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 39 39 H 1.08006 * 126.74770 * 0.04718 * 20 19 18 40 40 H 1.08992 * 109.47322 * 270.02355 * 24 23 22 41 41 H 1.08996 * 109.46889 * 30.02690 * 24 23 22 42 42 H 1.08995 * 109.46970 * 150.01984 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.1757 3.4285 4.2704 10 1 2.1161 5.5728 3.1386 11 1 0.1067 4.2236 3.2865 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 7.8439 -4.5728 -2.1099 21 7 9.1728 -4.4670 -1.9992 22 7 9.5330 -3.3015 -2.4072 23 7 8.5052 -2.6275 -2.7894 24 6 8.5223 -1.2603 -3.3154 25 1 -0.3633 0.5899 -0.8415 26 1 -0.3633 -1.0237 -0.0902 27 1 -0.3633 0.4337 0.9316 28 1 3.0797 1.3443 -0.1083 29 1 1.5612 1.9273 -0.8310 30 1 2.9876 4.9176 0.7775 31 1 1.3932 -1.6630 -1.2815 32 1 1.9552 -0.1531 -2.0382 33 1 2.9842 -2.8273 0.2040 34 1 3.4165 -2.8115 -2.2453 35 1 3.9750 -1.2717 -2.9420 36 1 5.9612 -1.4912 -1.5593 37 1 5.4001 -3.9264 -3.1222 38 1 5.9579 -2.3862 -3.8184 39 1 7.2394 -5.4280 -1.8456 40 1 8.4141 -0.5532 -2.4930 41 1 9.4673 -1.0800 -3.8276 42 1 7.6983 -1.1306 -4.0169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326598553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:15 Heat of formation + Delta-G solvation = 60.158666 kcal Electronic energy + Delta-G solvation = -22149.442656 eV Core-core repulsion = 18781.250962 eV Total energy + Delta-G solvation = -3368.191694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.175 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.42765 -38.30198 -36.37148 -35.23284 -34.64686 -32.51639 -31.88442 -29.61655 -28.24851 -27.38045 -26.59674 -24.59850 -23.21370 -22.77201 -21.67438 -20.93479 -20.08124 -17.51724 -16.89735 -16.65263 -16.53177 -15.68640 -15.33166 -14.98405 -14.77819 -14.67218 -14.24638 -13.95228 -13.62331 -13.46722 -13.29924 -13.16998 -12.87443 -12.54273 -12.02440 -11.91291 -11.69738 -11.44391 -11.16873 -11.04485 -10.96305 -10.75480 -10.66839 -10.41149 -10.28939 -9.80002 -9.63047 -9.40189 -9.16891 -8.65297 -8.44268 -7.24270 -6.04968 -4.05208 1.33997 2.12308 2.42795 3.33325 3.36919 3.40871 3.82064 4.11972 4.24779 4.41529 4.46272 4.63799 4.72759 4.79591 4.86512 4.94535 5.12581 5.22347 5.26522 5.31479 5.35477 5.52147 5.58221 5.59962 5.66182 5.97834 6.00906 6.04490 6.30675 6.31528 6.39849 6.64562 6.69466 7.02755 7.21918 7.26404 7.77828 8.04670 8.13295 8.21819 8.33395 8.52714 9.01906 9.58947 11.06183 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020193 B = 0.003201 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.278106 B = 8745.568642 C = 9493.630397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.194 3.806 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.902 5.902 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.026 3.974 13 C 0.119 3.881 14 H 0.099 0.901 15 O -0.530 6.530 16 C 0.027 3.973 17 N -0.672 5.672 18 C 0.133 3.867 19 C -0.015 4.015 20 C -0.030 4.030 21 N -0.273 5.273 22 N -0.088 5.088 23 N -0.289 5.289 24 C 0.076 3.924 25 H 0.011 0.989 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.029 0.971 29 H -0.012 1.012 30 H 0.261 0.739 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.362 0.638 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.343 0.657 37 H 0.102 0.898 38 H 0.042 0.958 39 H 0.190 0.810 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.937 -12.848 -11.944 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.255 5.255 3 C 0.069 3.931 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.542 5.542 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.104 4.104 13 C 0.058 3.942 14 H 0.117 0.883 15 O -0.332 6.332 16 C -0.102 4.102 17 N -0.304 5.304 18 C 0.002 3.998 19 C -0.147 4.147 20 C -0.188 4.188 21 N -0.138 5.138 22 N -0.067 5.067 23 N -0.084 5.084 24 C -0.066 4.066 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.006 0.994 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.207 0.793 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.162 0.838 37 H 0.120 0.880 38 H 0.059 0.941 39 H 0.207 0.793 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.940 -12.942 -10.814 18.237 hybrid contribution -1.871 1.527 -1.075 2.644 sum 5.069 -11.415 -11.889 17.244 Atomic orbital electron populations 1.22194 0.88751 0.98626 1.01168 1.62020 1.06581 1.17790 1.39127 1.19765 0.95312 0.81471 0.96563 1.21124 1.34682 0.96820 1.01687 0.91899 1.24982 0.95288 0.97356 0.97012 1.69938 1.38560 1.11499 1.34178 0.86551 0.78670 0.78275 0.83877 1.20063 1.21383 1.20307 1.22682 0.95971 0.98148 0.93594 1.21849 0.95127 0.92988 0.84221 0.88323 1.86700 1.74195 1.34226 1.38121 1.22777 0.89221 0.99922 0.98325 1.60383 1.02922 1.30305 1.36744 1.20357 0.87024 1.00244 0.92164 1.22088 0.91235 0.93380 1.08004 1.23366 0.92012 0.99136 1.04309 1.75091 1.12345 1.09604 1.16804 1.78306 1.12267 1.00475 1.15689 1.47230 1.05236 1.14067 1.41821 1.22312 1.05943 0.77204 1.01103 0.97061 0.93858 0.90914 0.95301 0.99423 0.92934 0.92037 0.95185 0.79310 0.90448 0.94346 0.83832 0.87985 0.94052 0.79303 0.88571 0.87832 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.31 60.07 0.56 1.34 16 2 N -0.53 -11.09 4.59 -244.37 -1.12 -12.21 16 3 C 0.19 4.94 4.55 -4.98 -0.02 4.92 16 4 C -0.50 -14.16 8.58 -34.44 -0.30 -14.46 16 5 H 0.06 1.76 7.10 -52.49 -0.37 1.39 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 C 0.03 0.42 4.65 -3.82 -0.02 0.40 16 13 C 0.12 1.76 3.25 -26.73 -0.09 1.67 16 14 H 0.10 1.76 6.73 -51.93 -0.35 1.41 16 15 O -0.53 -8.61 13.11 -35.23 -0.46 -9.07 16 16 C 0.03 0.28 5.35 -3.82 -0.02 0.26 16 17 N -0.67 -6.89 6.36 -115.06 -0.73 -7.62 16 18 C 0.13 1.05 5.91 -4.98 -0.03 1.02 16 19 C -0.01 -0.15 6.51 -82.09 -0.53 -0.68 16 20 C -0.03 -0.34 11.99 -17.74 -0.21 -0.55 16 21 N -0.27 -3.84 12.41 30.24 0.38 -3.47 16 22 N -0.09 -1.18 13.16 60.35 0.79 -0.39 16 23 N -0.29 -2.99 3.74 -63.80 -0.24 -3.23 16 24 C 0.08 0.46 11.21 59.84 0.67 1.13 16 25 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 26 H 0.04 0.67 7.85 -51.93 -0.41 0.27 16 27 H 0.07 1.47 7.01 -51.93 -0.36 1.11 16 28 H 0.03 0.78 6.60 -51.93 -0.34 0.44 16 29 H -0.01 -0.33 8.07 -51.92 -0.42 -0.74 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 32 H 0.03 0.48 8.00 -51.93 -0.42 0.07 16 33 H 0.36 4.49 9.05 45.56 0.41 4.90 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.34 3.77 8.72 -39.29 -0.34 3.42 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.27 7.32 -51.93 -0.38 -0.11 16 39 H 0.19 1.60 8.06 -52.48 -0.42 1.17 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.39 7.23 -51.93 -0.38 0.01 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -34.67 350.86 -6.32 -40.98 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.85 Total: 2.31 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.09 Total: -3.51 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.19 Total: -52.67 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.46 Total: -9.07 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.67 -6.32 -40.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326598553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.143 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds