Wall clock time and date at job start Tue Mar 31 2020 03:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47098 * 60.00416 * 8 6 4 10 10 H 1.48504 * 109.46649 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47435 * 300.00203 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.35346 * 126.91613 * 94.68097 * 19 18 17 21 21 N 1.33774 * 106.49744 * 179.90807 * 20 19 18 22 22 N 1.28627 * 108.88294 * 0.36691 * 21 20 19 23 23 N 1.28720 * 110.18510 * 359.77061 * 22 21 20 24 24 C 1.46496 * 125.87118 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 26 26 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 27 27 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 28 28 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 29 29 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 30 30 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 32 32 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 33 33 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 34 34 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 35 35 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 36 36 H 1.00899 * 110.99633 * 303.95531 * 17 16 13 37 37 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 38 38 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 39 39 H 1.08006 * 126.74770 * 0.04718 * 20 19 18 40 40 H 1.08992 * 109.47322 * 270.02355 * 24 23 22 41 41 H 1.08996 * 109.46889 * 30.02690 * 24 23 22 42 42 H 1.08995 * 109.46970 * 150.01984 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.1757 3.4285 4.2704 10 1 2.1161 5.5728 3.1386 11 1 0.1067 4.2236 3.2865 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 7.8439 -4.5728 -2.1099 21 7 9.1728 -4.4670 -1.9992 22 7 9.5330 -3.3015 -2.4072 23 7 8.5052 -2.6275 -2.7894 24 6 8.5223 -1.2603 -3.3154 25 1 -0.3633 0.5899 -0.8415 26 1 -0.3633 -1.0237 -0.0902 27 1 -0.3633 0.4337 0.9316 28 1 3.0797 1.3443 -0.1083 29 1 1.5612 1.9273 -0.8310 30 1 2.9876 4.9176 0.7775 31 1 1.3932 -1.6630 -1.2815 32 1 1.9552 -0.1531 -2.0382 33 1 2.9842 -2.8273 0.2040 34 1 3.4165 -2.8115 -2.2453 35 1 3.9750 -1.2717 -2.9420 36 1 5.9612 -1.4912 -1.5593 37 1 5.4001 -3.9264 -3.1222 38 1 5.9579 -2.3862 -3.8184 39 1 7.2394 -5.4280 -1.8456 40 1 8.4141 -0.5532 -2.4930 41 1 9.4673 -1.0800 -3.8276 42 1 7.6983 -1.1306 -4.0169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326598553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:14 Heat of formation + Delta-G solvation = 29.570290 kcal Electronic energy + Delta-G solvation = -22150.769068 eV Core-core repulsion = 18781.250962 eV Total energy + Delta-G solvation = -3369.518105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.175 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.24864 -39.50732 -37.57295 -36.41114 -35.43802 -34.59478 -32.77370 -30.79563 -29.32377 -28.89134 -27.64290 -25.96727 -24.65942 -23.58937 -22.81552 -21.87600 -21.51109 -18.59733 -18.26684 -17.66654 -17.64107 -16.83071 -16.76498 -16.32679 -15.83985 -15.74816 -15.53457 -15.06530 -14.89431 -14.59569 -14.20672 -14.02155 -13.86714 -13.72738 -13.50825 -13.13145 -12.95033 -12.76317 -12.56377 -12.52666 -12.45823 -12.32279 -12.11208 -11.89569 -11.49496 -11.32553 -11.08367 -10.68851 -10.59733 -10.23647 -9.39038 -8.91076 -8.20931 -6.29532 0.54114 1.39989 1.43245 1.47315 1.50797 1.56493 2.40191 2.96625 3.11990 3.38563 3.52134 3.62974 3.81620 3.87575 4.00791 4.11525 4.19628 4.24510 4.40322 4.46796 4.51374 4.58417 4.62227 4.64190 4.66681 4.80224 4.81968 4.89424 5.09691 5.13984 5.23494 5.26438 5.32489 5.59461 5.65456 5.93639 6.08064 6.20753 6.36800 6.68978 6.86356 7.20169 7.39862 7.47306 8.89737 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020193 B = 0.003201 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.278106 B = 8745.568642 C = 9493.630397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.545 5.545 3 C 0.211 3.789 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.965 3.035 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.267 1.267 12 C 0.025 3.975 13 C 0.124 3.876 14 H 0.056 0.944 15 O -0.555 6.555 16 C 0.044 3.956 17 N -0.685 5.685 18 C 0.139 3.861 19 C -0.009 4.009 20 C -0.043 4.043 21 N -0.312 5.312 22 N -0.123 5.123 23 N -0.284 5.284 24 C 0.064 3.936 25 H 0.008 0.992 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.005 0.995 29 H -0.040 1.040 30 H 0.264 0.736 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.379 0.621 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.336 0.664 37 H 0.123 0.877 38 H 0.064 0.936 39 H 0.211 0.789 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 -13.801 -12.597 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.269 5.269 3 C 0.085 3.915 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.790 3.210 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.192 1.192 12 C -0.104 4.104 13 C 0.063 3.937 14 H 0.075 0.925 15 O -0.361 6.361 16 C -0.086 4.086 17 N -0.316 5.316 18 C 0.009 3.991 19 C -0.143 4.143 20 C -0.202 4.202 21 N -0.176 5.176 22 N -0.102 5.102 23 N -0.079 5.079 24 C -0.075 4.075 25 H 0.026 0.974 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.023 0.977 29 H -0.022 1.022 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.227 0.773 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.082 0.918 39 H 0.228 0.772 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.550 -13.917 -11.484 18.877 hybrid contribution -1.474 1.797 -0.902 2.493 sum 4.076 -12.120 -12.386 17.802 Atomic orbital electron populations 1.22207 0.87514 1.00924 0.99914 1.61910 1.07853 1.15110 1.42039 1.19366 0.93719 0.83902 0.94517 1.21474 1.34712 0.97458 1.02625 0.92334 1.25863 0.95086 0.98084 1.00529 1.70054 1.39417 1.11866 1.36086 0.85504 0.78883 0.77219 0.79438 1.19703 1.20705 1.19154 1.22828 0.97165 0.98658 0.91705 1.21680 0.93984 0.92211 0.85778 0.92543 1.86652 1.74831 1.35323 1.39259 1.22559 0.89385 1.00569 0.96066 1.60360 1.02877 1.30164 1.38244 1.20469 0.85536 1.01194 0.91907 1.22453 0.92074 0.92850 1.06905 1.23877 0.91423 1.00553 1.04369 1.75027 1.14058 1.10378 1.18114 1.78228 1.13642 1.00956 1.17381 1.47565 1.04815 1.14974 1.40585 1.22682 1.07775 0.75293 1.01778 0.97378 0.89764 0.93058 0.97729 1.02222 0.92739 0.88284 0.95189 0.77324 0.87795 0.93126 0.84705 0.85945 0.91770 0.77198 0.88272 0.86704 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.31 127.69 1.19 2.74 16 2 N -0.55 -22.50 4.59 -927.06 -4.25 -26.75 16 3 C 0.21 11.07 4.55 85.56 0.39 11.46 16 4 C -0.52 -29.98 8.58 25.60 0.22 -29.76 16 5 H 0.06 3.32 7.10 -2.91 -0.02 3.30 16 6 C 0.00 0.13 5.46 84.66 0.46 0.59 16 7 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 8 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 C 0.03 0.77 4.65 86.30 0.40 1.17 16 13 C 0.12 3.53 3.25 30.59 0.10 3.63 16 14 H 0.06 2.09 6.73 -2.39 -0.02 2.07 16 15 O -0.56 -17.31 13.11 -148.98 -1.95 -19.26 16 16 C 0.04 0.77 5.35 86.30 0.46 1.24 16 17 N -0.69 -12.44 6.36 -517.94 -3.29 -15.73 16 18 C 0.14 1.74 5.91 85.56 0.51 2.24 16 19 C -0.01 -0.17 6.51 41.35 0.27 0.10 16 20 C -0.04 -0.93 11.99 83.73 1.00 0.07 16 21 N -0.31 -8.85 12.41 -58.25 -0.72 -9.57 16 22 N -0.12 -3.34 13.16 37.02 0.49 -2.85 16 23 N -0.28 -5.64 3.74 -355.75 -1.33 -6.97 16 24 C 0.06 0.69 11.21 127.77 1.43 2.13 16 25 H 0.01 0.28 8.08 -2.39 -0.02 0.26 16 26 H 0.08 2.35 7.85 -2.39 -0.02 2.33 16 27 H 0.05 2.05 7.01 -2.39 -0.02 2.04 16 28 H 0.00 0.26 6.60 -2.39 -0.02 0.25 16 29 H -0.04 -2.25 8.07 -2.38 -0.02 -2.27 16 30 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.10 2.26 7.75 -2.39 -0.02 2.24 16 32 H 0.03 0.92 8.00 -2.39 -0.02 0.90 16 33 H 0.38 8.43 9.05 -74.06 -0.67 7.76 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.34 6.97 8.72 -89.70 -0.78 6.19 16 37 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.06 0.56 7.32 -2.39 -0.02 0.54 16 39 H 0.21 3.24 8.06 -2.91 -0.02 3.21 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.11 0.96 8.14 -2.39 -0.02 0.95 16 42 H 0.12 0.66 7.23 -2.39 -0.02 0.64 16 Total: -1.00 -77.65 350.86 -2.74 -80.39 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -0.42 Total: 14.03 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 6.43 Total: -4.39 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -8.83 Total: -117.42 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -1.95 Total: -19.26 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -77.65 -2.74 -80.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326598553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.959 kcal (2) G-P(sol) polarization free energy of solvation -77.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds