Wall clock time and date at job start Tue Mar 31 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47011 * 2 1 4 4 C 1.46496 * 119.99892 * 259.94513 * 3 2 1 5 5 C 1.53001 * 109.47170 * 269.99806 * 4 3 2 6 6 N 1.46900 * 109.47091 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00034 * 79.94187 * 3 2 1 8 8 O 1.21341 * 120.00184 * 180.34459 * 7 3 2 9 9 C 1.49454 * 120.00002 * 0.34808 * 7 3 2 10 10 O 1.21346 * 119.99935 * 4.33978 * 9 7 3 11 11 N 1.34773 * 120.00268 * 184.33088 * 9 7 3 12 12 C 1.46503 * 120.00304 * 185.04562 * 11 9 7 13 13 C 1.52999 * 109.47091 * 184.84123 * 12 11 9 14 14 C 1.50701 * 115.55343 * 305.58449 * 13 12 11 15 15 H 1.08001 * 120.00172 * 95.30695 * 14 13 12 16 16 C 1.37874 * 119.99568 * 275.03740 * 14 13 12 17 17 N 1.31512 * 120.00222 * 355.37760 * 16 14 13 18 18 Si 1.86804 * 119.99560 * 175.38246 * 16 14 13 19 19 H 1.48493 * 109.47438 * 59.99680 * 18 16 14 20 20 H 1.48503 * 109.46820 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47210 * 299.99433 * 18 16 14 22 22 C 1.53008 * 117.49732 * 91.25486 * 13 12 11 23 23 C 1.53001 * 117.49932 * 159.91231 * 13 12 11 24 24 H 1.09002 * 109.47219 * 60.00366 * 1 2 3 25 25 H 1.09003 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47502 * 299.99823 * 1 2 3 27 27 H 1.09000 * 109.46921 * 239.99718 * 2 1 3 28 28 H 1.08996 * 109.47013 * 119.99991 * 2 1 3 29 29 H 1.09005 * 109.47533 * 30.00065 * 4 3 2 30 30 H 1.09005 * 109.47289 * 150.00023 * 4 3 2 31 31 H 1.08995 * 109.47198 * 299.99957 * 5 4 3 32 32 H 1.08998 * 109.47115 * 60.00244 * 5 4 3 33 33 H 1.00894 * 110.99960 * 180.02562 * 6 5 4 34 34 H 1.00902 * 110.99974 * 303.95462 * 6 5 4 35 35 H 0.97002 * 119.99683 * 5.04859 * 11 9 7 36 36 H 1.08996 * 109.46776 * 64.84080 * 12 11 9 37 37 H 1.08995 * 109.46877 * 304.83981 * 12 11 9 38 38 H 0.97008 * 119.99795 * 185.00369 * 17 16 14 39 39 H 1.08998 * 117.49564 * 215.00002 * 22 13 12 40 40 H 1.09000 * 117.49574 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.49365 * 359.97438 * 23 13 12 42 42 H 1.08992 * 117.50009 * 144.97435 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4713 1.9980 -1.2492 5 6 3.9681 1.7393 -1.4323 6 7 4.4225 2.3583 -2.6846 7 6 2.0507 2.0845 1.1492 8 8 2.4493 3.2306 1.1482 9 6 1.5959 1.4528 2.4250 10 8 1.2719 0.2834 2.4412 11 7 1.5456 2.1817 3.5575 12 6 1.2065 1.5375 4.8289 13 6 1.1007 2.5986 5.9260 14 6 2.3063 3.4882 6.0884 15 1 2.3387 4.4489 5.5960 16 6 3.3654 3.0780 6.8700 17 7 3.2865 1.9529 7.5464 18 14 4.9123 4.1205 6.9684 19 1 4.5712 5.4634 7.5025 20 1 5.8945 3.4649 7.8689 21 1 5.5010 4.2620 5.6124 22 6 -0.2747 3.2199 6.1776 23 6 0.3167 2.2340 7.1883 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9230 1.5670 -2.0870 30 1 2.2903 3.0722 -1.2106 31 1 4.5164 2.1703 -0.5946 32 1 4.1492 0.6651 -1.4709 33 1 5.4086 2.2010 -2.8287 34 1 3.8846 2.0228 -3.4697 35 1 1.7338 3.1329 3.5308 36 1 1.9839 0.8199 5.0912 37 1 0.2523 1.0199 4.7308 38 1 4.0006 1.7002 8.1523 39 1 -0.3075 4.2720 6.4606 40 1 -1.1042 2.8723 5.5618 41 1 -0.1240 1.2382 7.2368 42 1 0.6731 2.6371 8.1361 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331571341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:49 Heat of formation + Delta-G solvation = -38.417176 kcal Electronic energy + Delta-G solvation = -23002.925035 eV Core-core repulsion = 19598.166021 eV Total energy + Delta-G solvation = -3404.759014 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.53994 -38.30144 -36.84063 -36.47422 -34.65882 -33.25081 -31.98772 -30.70830 -28.21764 -26.75367 -25.41772 -23.89871 -23.17168 -21.53398 -21.07930 -19.72272 -18.99469 -17.41000 -16.96385 -16.17764 -16.05121 -15.87731 -15.23132 -14.90022 -14.66354 -14.39428 -14.20726 -13.88973 -13.56187 -13.45859 -13.12455 -12.77473 -12.58724 -12.08558 -12.04937 -11.89969 -11.63467 -11.42015 -11.18767 -10.97409 -10.94680 -10.74812 -10.53661 -10.24070 -9.59272 -9.10122 -9.07710 -8.98388 -8.71851 -8.54246 -8.39497 -8.11835 -6.09723 -4.19749 1.81217 2.59213 3.29040 3.33648 3.37867 3.60203 3.82489 4.35628 4.42324 4.73278 4.89558 4.94563 5.02679 5.18329 5.23535 5.33144 5.37291 5.49906 5.65531 5.74369 5.84858 5.96173 6.05550 6.24220 6.27390 6.41180 6.46876 6.47192 6.68215 6.77268 6.79536 7.04281 7.07639 7.11352 7.17282 7.30489 7.49428 7.79840 7.82590 8.19689 8.30497 8.57132 8.82537 9.48504 10.97165 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017159 B = 0.004814 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.425877 B = 5815.564334 C = 6899.908785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.096 3.904 3 N -0.591 5.591 4 C 0.116 3.884 5 C 0.045 3.955 6 N -0.846 5.846 7 C 0.506 3.494 8 O -0.515 6.515 9 C 0.494 3.506 10 O -0.534 6.534 11 N -0.662 5.662 12 C 0.160 3.840 13 C 0.021 3.979 14 C -0.503 4.503 15 H 0.062 0.938 16 C 0.076 3.924 17 N -0.875 5.875 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.210 4.210 23 C -0.140 4.140 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.345 0.655 34 H 0.338 0.662 35 H 0.415 0.585 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.262 0.738 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.495 -4.146 -16.139 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.026 4.026 3 N -0.326 5.326 4 C -0.008 4.008 5 C -0.086 4.086 6 N -0.376 5.376 7 C 0.289 3.711 8 O -0.389 6.389 9 C 0.274 3.726 10 O -0.414 6.414 11 N -0.312 5.312 12 C 0.038 3.962 13 C 0.021 3.979 14 C -0.540 4.540 15 H 0.080 0.920 16 C -0.129 4.129 17 N -0.511 5.511 18 Si 0.717 3.283 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.248 4.248 23 C -0.178 4.178 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.132 0.868 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.252 0.748 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.580 -3.816 -15.646 16.310 hybrid contribution 1.244 -0.133 -0.166 1.262 sum -1.337 -3.949 -15.812 16.352 Atomic orbital electron populations 1.22086 0.95553 1.02254 1.01815 1.22083 0.95138 0.81115 1.04266 1.47804 1.62837 1.14908 1.07017 1.21435 0.93623 1.00604 0.85101 1.22156 0.96523 0.96522 0.93438 1.58574 1.08808 1.65810 1.04454 1.20546 0.79252 0.86071 0.85239 1.90763 1.45154 1.17084 1.85898 1.19884 0.80603 0.86973 0.85108 1.90609 1.49065 1.16139 1.85627 1.45903 1.64884 1.13736 1.06679 1.21133 0.98754 0.95494 0.80867 1.19018 0.90080 0.95776 0.93054 1.20330 0.99383 1.02677 1.31636 0.92022 1.24970 0.98156 0.94686 0.95045 1.69977 1.33422 1.21906 1.25780 0.86697 0.82988 0.80407 0.78225 1.20160 1.21275 1.19949 1.23066 0.97906 0.98290 1.05493 1.22463 1.03191 0.96722 0.95459 0.93528 0.91622 0.91765 0.91465 0.86773 0.90564 0.88784 0.90299 0.95297 0.84199 0.84978 0.74790 0.90998 0.93422 0.92801 0.90262 0.91657 0.91769 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.63 37.16 0.36 -1.46 16 2 C 0.10 1.13 5.74 -4.04 -0.02 1.11 16 3 N -0.59 -8.00 2.51 -174.20 -0.44 -8.43 16 4 C 0.12 1.31 5.62 -4.04 -0.02 1.28 16 5 C 0.05 0.49 7.11 -3.82 -0.03 0.46 16 6 N -0.85 -7.44 9.62 -10.37 -0.10 -7.54 16 7 C 0.51 8.71 7.64 -11.58 -0.09 8.62 16 8 O -0.51 -10.02 16.07 5.50 0.09 -9.93 16 9 C 0.49 9.28 7.35 -11.59 -0.09 9.19 16 10 O -0.53 -10.14 11.74 5.50 0.06 -10.08 16 11 N -0.66 -13.45 5.40 -60.73 -0.33 -13.77 16 12 C 0.16 3.51 5.60 -4.04 -0.02 3.49 16 13 C 0.02 0.50 1.62 -155.66 -0.25 0.25 16 14 C -0.50 -12.97 8.07 -34.44 -0.28 -13.25 16 15 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 16 C 0.08 2.01 5.43 -17.82 -0.10 1.91 16 17 N -0.88 -23.93 12.65 55.43 0.70 -23.23 16 18 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.21 -4.39 9.93 -26.69 -0.26 -4.65 16 23 C -0.14 -3.16 9.18 -26.69 -0.24 -3.40 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.90 6.56 -51.93 -0.34 0.56 16 27 H 0.07 0.61 8.00 -51.93 -0.42 0.19 16 28 H 0.11 1.60 5.60 -51.93 -0.29 1.31 16 29 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.09 1.24 7.42 -51.93 -0.39 0.85 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.35 2.53 9.08 -39.29 -0.36 2.17 16 34 H 0.34 2.24 8.99 -39.29 -0.35 1.88 16 35 H 0.42 8.59 7.44 -40.82 -0.30 8.28 16 36 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.05 0.99 8.05 -51.93 -0.42 0.57 16 38 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 39 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -28.70 350.40 -7.43 -36.13 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.63 Total: 12.23 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.05 Total: 3.54 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.16 Total: -52.98 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.15 Total: -20.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.70 -7.43 -36.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331571341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.286 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds