Wall clock time and date at job start Tue Mar 31 2020 02:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47011 * 2 1 4 4 C 1.46496 * 119.99892 * 259.94513 * 3 2 1 5 5 C 1.53001 * 109.47170 * 269.99806 * 4 3 2 6 6 N 1.46900 * 109.47091 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00034 * 79.94187 * 3 2 1 8 8 O 1.21341 * 120.00184 * 180.34459 * 7 3 2 9 9 C 1.49454 * 120.00002 * 0.34808 * 7 3 2 10 10 O 1.21346 * 119.99935 * 4.33978 * 9 7 3 11 11 N 1.34773 * 120.00268 * 184.33088 * 9 7 3 12 12 C 1.46503 * 120.00304 * 185.04562 * 11 9 7 13 13 C 1.52999 * 109.47091 * 184.84123 * 12 11 9 14 14 C 1.50701 * 115.55343 * 305.58449 * 13 12 11 15 15 H 1.08001 * 120.00172 * 95.30695 * 14 13 12 16 16 C 1.37874 * 119.99568 * 275.03740 * 14 13 12 17 17 N 1.31512 * 120.00222 * 355.37760 * 16 14 13 18 18 Si 1.86804 * 119.99560 * 175.38246 * 16 14 13 19 19 H 1.48493 * 109.47438 * 59.99680 * 18 16 14 20 20 H 1.48503 * 109.46820 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47210 * 299.99433 * 18 16 14 22 22 C 1.53008 * 117.49732 * 91.25486 * 13 12 11 23 23 C 1.53001 * 117.49932 * 159.91231 * 13 12 11 24 24 H 1.09002 * 109.47219 * 60.00366 * 1 2 3 25 25 H 1.09003 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47502 * 299.99823 * 1 2 3 27 27 H 1.09000 * 109.46921 * 239.99718 * 2 1 3 28 28 H 1.08996 * 109.47013 * 119.99991 * 2 1 3 29 29 H 1.09005 * 109.47533 * 30.00065 * 4 3 2 30 30 H 1.09005 * 109.47289 * 150.00023 * 4 3 2 31 31 H 1.08995 * 109.47198 * 299.99957 * 5 4 3 32 32 H 1.08998 * 109.47115 * 60.00244 * 5 4 3 33 33 H 1.00894 * 110.99960 * 180.02562 * 6 5 4 34 34 H 1.00902 * 110.99974 * 303.95462 * 6 5 4 35 35 H 0.97002 * 119.99683 * 5.04859 * 11 9 7 36 36 H 1.08996 * 109.46776 * 64.84080 * 12 11 9 37 37 H 1.08995 * 109.46877 * 304.83981 * 12 11 9 38 38 H 0.97008 * 119.99795 * 185.00369 * 17 16 14 39 39 H 1.08998 * 117.49564 * 215.00002 * 22 13 12 40 40 H 1.09000 * 117.49574 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.49365 * 359.97438 * 23 13 12 42 42 H 1.08992 * 117.50009 * 144.97435 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4713 1.9980 -1.2492 5 6 3.9681 1.7393 -1.4323 6 7 4.4225 2.3583 -2.6846 7 6 2.0507 2.0845 1.1492 8 8 2.4493 3.2306 1.1482 9 6 1.5959 1.4528 2.4250 10 8 1.2719 0.2834 2.4412 11 7 1.5456 2.1817 3.5575 12 6 1.2065 1.5375 4.8289 13 6 1.1007 2.5986 5.9260 14 6 2.3063 3.4882 6.0884 15 1 2.3387 4.4489 5.5960 16 6 3.3654 3.0780 6.8700 17 7 3.2865 1.9529 7.5464 18 14 4.9123 4.1205 6.9684 19 1 4.5712 5.4634 7.5025 20 1 5.8945 3.4649 7.8689 21 1 5.5010 4.2620 5.6124 22 6 -0.2747 3.2199 6.1776 23 6 0.3167 2.2340 7.1883 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9230 1.5670 -2.0870 30 1 2.2903 3.0722 -1.2106 31 1 4.5164 2.1703 -0.5946 32 1 4.1492 0.6651 -1.4709 33 1 5.4086 2.2010 -2.8287 34 1 3.8846 2.0228 -3.4697 35 1 1.7338 3.1329 3.5308 36 1 1.9839 0.8199 5.0912 37 1 0.2523 1.0199 4.7308 38 1 4.0006 1.7002 8.1523 39 1 -0.3075 4.2720 6.4606 40 1 -1.1042 2.8723 5.5618 41 1 -0.1240 1.2382 7.2368 42 1 0.6731 2.6371 8.1361 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331571341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:48 Heat of formation + Delta-G solvation = -59.124744 kcal Electronic energy + Delta-G solvation = -23003.822983 eV Core-core repulsion = 19598.166021 eV Total energy + Delta-G solvation = -3405.656962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89949 -39.76352 -38.49921 -37.71705 -35.61135 -34.78541 -33.98137 -31.65683 -29.40702 -28.28810 -27.32822 -25.14204 -24.15075 -22.97501 -22.57391 -21.43660 -20.48925 -18.79252 -18.25679 -17.85816 -17.19645 -17.03954 -16.67403 -16.60612 -16.13212 -15.74671 -15.46310 -15.16787 -14.72773 -14.70464 -14.42239 -14.36635 -13.82398 -13.63747 -13.51160 -13.06804 -12.96239 -12.91749 -12.83924 -12.45149 -12.39709 -12.23688 -12.01291 -11.88324 -11.40615 -10.97606 -10.50497 -10.42078 -10.12241 -9.99593 -9.82203 -9.64746 -8.11777 -6.25238 0.38953 1.33535 1.40664 1.43467 1.49046 2.16759 2.40139 2.51715 3.15558 3.34650 3.57293 3.68802 3.92050 4.04495 4.16082 4.20855 4.38056 4.45192 4.50844 4.59481 4.64529 4.67558 4.72432 4.81543 4.92646 4.96523 5.02518 5.08945 5.25550 5.28030 5.45947 5.46634 5.55388 5.69171 5.76060 5.93761 6.13948 6.34638 6.38970 6.57521 6.75266 6.81801 7.03357 7.44643 8.94517 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017159 B = 0.004814 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.425877 B = 5815.564334 C = 6899.908785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 N -0.576 5.576 4 C 0.114 3.886 5 C 0.053 3.947 6 N -0.852 5.852 7 C 0.505 3.495 8 O -0.545 6.545 9 C 0.494 3.506 10 O -0.536 6.536 11 N -0.671 5.671 12 C 0.177 3.823 13 C -0.003 4.003 14 C -0.509 4.509 15 H 0.056 0.944 16 C 0.033 3.967 17 N -0.901 5.901 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.278 1.278 22 C -0.183 4.183 23 C -0.145 4.145 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.032 0.968 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.354 0.646 34 H 0.354 0.646 35 H 0.412 0.588 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.260 0.740 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 -4.607 -18.468 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.028 4.028 3 N -0.309 5.309 4 C -0.008 4.008 5 C -0.079 4.079 6 N -0.385 5.385 7 C 0.287 3.713 8 O -0.423 6.423 9 C 0.275 3.725 10 O -0.416 6.416 11 N -0.321 5.321 12 C 0.053 3.947 13 C -0.004 4.004 14 C -0.547 4.547 15 H 0.074 0.926 16 C -0.169 4.169 17 N -0.538 5.538 18 Si 0.768 3.232 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.204 1.204 22 C -0.220 4.220 23 C -0.183 4.183 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.126 0.874 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.249 0.751 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.099 -4.306 -18.023 18.788 hybrid contribution 1.372 -0.043 0.456 1.446 sum -1.727 -4.349 -17.567 18.180 Atomic orbital electron populations 1.22040 0.94964 1.03106 1.01137 1.22205 0.95562 0.79928 1.05153 1.47913 1.61127 1.15306 1.06581 1.21633 0.94624 0.99702 0.84814 1.21963 0.95482 0.97200 0.93287 1.58496 1.09781 1.65901 1.04281 1.20245 0.79518 0.85883 0.85643 1.90750 1.46997 1.18255 1.86268 1.20233 0.79995 0.86875 0.85445 1.90616 1.48807 1.16217 1.85940 1.45849 1.65886 1.13612 1.06717 1.20776 0.98069 0.94507 0.81312 1.19079 0.90668 0.96615 0.94006 1.20586 1.00415 1.02739 1.30917 0.92574 1.25573 1.00444 0.95694 0.95151 1.70071 1.34046 1.23136 1.26576 0.85874 0.80205 0.79359 0.77780 1.19540 1.21124 1.20366 1.23056 0.97008 0.98002 1.03984 1.22378 1.03664 0.97833 0.94405 0.91734 0.90054 0.94834 0.87419 0.89071 0.86664 0.90732 0.93663 0.93750 0.83185 0.83233 0.75139 0.94186 0.92318 0.93051 0.90132 0.89155 0.90542 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.63 71.98 0.69 -2.45 16 2 C 0.09 1.95 5.74 86.38 0.50 2.45 16 3 N -0.58 -14.64 2.51 -823.40 -2.06 -16.70 16 4 C 0.11 2.31 5.62 86.38 0.49 2.80 16 5 C 0.05 1.03 7.11 86.30 0.61 1.64 16 6 N -0.85 -13.00 9.62 -186.72 -1.80 -14.80 16 7 C 0.50 17.29 7.64 87.27 0.67 17.96 16 8 O -0.55 -21.52 16.07 -3.22 -0.05 -21.57 16 9 C 0.49 18.63 7.35 87.27 0.64 19.27 16 10 O -0.54 -20.29 11.74 -3.23 -0.04 -20.33 16 11 N -0.67 -27.62 5.40 -464.42 -2.51 -30.13 16 12 C 0.18 7.83 5.60 86.38 0.48 8.31 16 13 C 0.00 -0.14 1.62 -52.92 -0.09 -0.23 16 14 C -0.51 -26.56 8.07 25.60 0.21 -26.36 16 15 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 16 C 0.03 1.76 5.43 84.65 0.46 2.22 16 17 N -0.90 -50.23 12.65 21.45 0.27 -49.96 16 18 Si 0.94 43.27 29.54 68.60 2.03 45.30 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 C -0.18 -7.43 9.93 30.62 0.30 -7.13 16 23 C -0.14 -6.50 9.18 30.62 0.28 -6.22 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 26 H 0.03 0.89 6.56 -2.39 -0.02 0.87 16 27 H 0.11 1.46 8.00 -2.39 -0.02 1.44 16 28 H 0.09 2.42 5.60 -2.39 -0.01 2.41 16 29 H 0.12 1.48 8.07 -2.38 -0.02 1.46 16 30 H 0.07 1.87 7.42 -2.38 -0.02 1.85 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.35 4.45 9.08 -89.70 -0.81 3.63 16 34 H 0.35 3.54 8.99 -89.69 -0.81 2.74 16 35 H 0.41 17.41 7.44 -92.71 -0.69 16.72 16 36 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 38 H 0.26 14.03 8.32 -92.70 -0.77 13.26 16 39 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -62.74 350.40 -0.17 -62.92 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -1.26 Total: 33.02 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.25 Total: 12.25 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -6.09 Total: -111.58 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.09 Total: -41.90 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -62.74 -0.17 -62.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331571341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.791 kcal (2) G-P(sol) polarization free energy of solvation -62.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds