Wall clock time and date at job start Tue Mar 31 2020 03:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47066 * 2 1 4 4 C 1.46908 * 110.99694 * 293.95075 * 3 2 1 5 5 C 1.46902 * 111.00162 * 169.99943 * 3 2 1 6 6 C 1.52996 * 109.46937 * 287.95399 * 5 3 2 7 7 H 1.08994 * 109.46936 * 58.53427 * 6 5 3 8 8 O 1.42902 * 109.47258 * 298.53202 * 6 5 3 9 9 C 1.53001 * 109.46987 * 178.53340 * 6 5 3 10 10 N 1.46497 * 109.47017 * 184.99953 * 9 6 5 11 11 C 1.35319 * 125.86768 * 125.29366 * 10 9 6 12 12 C 1.35347 * 106.17355 * 180.18482 * 11 10 9 13 13 C 1.50707 * 126.74823 * 179.85349 * 12 11 10 14 14 N 1.46495 * 109.47100 * 94.71576 * 13 12 11 15 15 C 1.36941 * 120.00044 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99708 * 359.72238 * 15 14 13 17 17 C 1.38813 * 120.00036 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00076 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99982 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47268 * 90.00081 * 19 17 15 21 21 H 1.48501 * 109.47256 * 210.00013 * 19 17 15 22 22 H 1.48502 * 109.47101 * 329.99967 * 19 17 15 23 23 N 1.33770 * 106.49932 * 359.59500 * 12 11 10 24 24 N 1.28634 * 108.88400 * 0.25918 * 23 12 11 25 25 H 1.09002 * 109.47572 * 299.99997 * 1 2 3 26 26 H 1.08995 * 109.47394 * 60.00672 * 1 2 3 27 27 H 1.09006 * 109.46831 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47433 * 239.99116 * 2 1 3 29 29 H 1.09008 * 109.47253 * 119.99133 * 2 1 3 30 30 H 1.08999 * 109.47134 * 302.02248 * 4 3 2 31 31 H 1.08995 * 109.46923 * 62.02428 * 4 3 2 32 32 H 1.09002 * 109.46858 * 182.02266 * 4 3 2 33 33 H 1.09011 * 109.46912 * 167.95558 * 5 3 2 34 34 H 1.08999 * 109.46976 * 47.95961 * 5 3 2 35 35 H 0.96702 * 113.99997 * 300.00267 * 8 6 5 36 36 H 1.08999 * 109.47371 * 64.99946 * 9 6 5 37 37 H 1.09001 * 109.47297 * 304.99910 * 9 6 5 38 38 H 1.08005 * 126.91206 * 0.04217 * 11 10 9 39 39 H 1.09000 * 109.47186 * 334.71523 * 13 12 11 40 40 H 1.09002 * 109.46591 * 214.71135 * 13 12 11 41 41 H 0.97000 * 120.00123 * 359.97438 * 14 13 12 42 42 H 0.96996 * 120.00335 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6701 2.0668 -1.2534 5 6 3.4685 1.4311 0.2382 6 6 3.7563 1.0829 1.6999 7 1 3.3615 0.0915 1.9217 8 8 3.1315 2.0460 2.5510 9 6 5.2675 1.0953 1.9390 10 7 5.5494 0.6464 3.3047 11 6 6.3753 -0.3680 3.6513 12 6 6.3373 -0.4402 5.0023 13 6 7.0868 -1.4142 5.8746 14 7 8.3386 -0.8019 6.3264 15 6 9.1907 -1.5037 7.1368 16 1 8.9377 -2.5069 7.4464 17 6 10.3771 -0.9237 7.5644 18 7 11.1959 -1.5980 8.3436 19 14 10.8110 0.8144 7.0350 20 1 10.2712 1.7823 8.0235 21 1 12.2875 0.9551 6.9600 22 1 10.2194 1.0877 5.7007 23 7 5.5082 0.5266 5.4113 24 7 5.0580 1.1522 4.3815 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8934 -0.5137 0.8901 30 1 2.0901 1.5168 -2.0956 31 1 0.5856 2.1110 -1.3528 32 1 2.0754 3.0786 -1.2418 33 1 3.8402 2.4331 0.0233 34 1 3.9666 0.7117 -0.4117 35 1 3.4356 2.9528 2.4084 36 1 5.6486 2.1074 1.8032 37 1 5.7532 0.4259 1.2290 38 1 6.9475 -0.9954 2.9840 39 1 7.3086 -2.3163 5.3045 40 1 6.4755 -1.6720 6.7396 41 1 8.5639 0.1006 6.0515 42 1 12.0248 -1.1926 8.6428 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333547767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:52 Heat of formation + Delta-G solvation = 76.884615 kcal Electronic energy + Delta-G solvation = -22065.386138 eV Core-core repulsion = 18697.919736 eV Total energy + Delta-G solvation = -3367.466402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.175 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.99526 -39.17954 -36.93256 -35.19001 -34.03798 -31.90569 -31.63918 -30.36496 -30.17173 -27.59819 -26.06734 -25.11667 -23.04952 -22.36720 -21.58115 -21.15176 -20.60750 -18.00221 -17.36878 -16.89355 -16.22612 -16.10745 -15.98457 -15.20921 -14.81993 -14.60881 -14.48195 -14.36381 -13.93182 -13.31559 -13.18680 -12.86538 -12.67875 -12.59931 -12.36749 -12.25541 -12.04799 -11.91716 -11.62253 -11.46956 -11.17124 -11.00684 -10.83903 -10.57209 -10.44097 -10.13948 -9.75562 -9.56072 -8.92043 -8.85557 -8.81308 -7.19718 -5.72926 -3.08211 1.79971 2.32124 2.87306 3.27887 3.41823 3.47212 3.49839 3.95750 4.07169 4.26068 4.45020 4.51728 4.59013 4.64185 4.66985 4.77164 4.79336 4.93312 4.97858 5.07611 5.09412 5.20506 5.30738 5.38949 5.43556 5.49892 5.56783 5.60204 5.77801 5.79988 5.83167 6.33755 6.47779 6.52539 6.62366 6.71014 6.75687 7.42558 8.02124 8.45981 8.83614 9.24299 9.96942 10.17436 11.45293 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.038757 B = 0.002884 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.282480 B = 9706.348555 C = 9978.807551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 N -0.531 5.531 4 C 0.023 3.977 5 C 0.024 3.976 6 C 0.105 3.895 7 H 0.104 0.896 8 O -0.523 6.523 9 C 0.084 3.916 10 N -0.298 5.298 11 C -0.052 4.052 12 C -0.012 4.012 13 C 0.238 3.762 14 N -0.750 5.750 15 C -0.242 4.242 16 H 0.093 0.907 17 C 0.006 3.994 18 N -0.934 5.934 19 Si 0.885 3.115 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.280 1.280 23 N -0.261 5.261 24 N -0.068 5.068 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.372 0.628 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.188 0.812 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.362 0.638 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.879 6.029 -25.041 31.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 N -0.255 5.255 4 C -0.125 4.125 5 C -0.105 4.105 6 C 0.043 3.957 7 H 0.121 0.879 8 O -0.326 6.326 9 C -0.040 4.040 10 N -0.092 5.092 11 C -0.202 4.202 12 C -0.150 4.150 13 C 0.109 3.891 14 N -0.396 5.396 15 C -0.372 4.372 16 H 0.111 0.889 17 C -0.190 4.190 18 N -0.582 5.582 19 Si 0.715 3.285 20 H -0.209 1.209 21 H -0.218 1.218 22 H -0.206 1.206 23 N -0.128 5.128 24 N -0.047 5.047 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.219 0.781 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.205 0.795 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.195 0.805 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.270 6.635 -23.725 31.902 hybrid contribution 1.974 0.500 -1.974 2.836 sum -18.296 7.135 -25.699 32.343 Atomic orbital electron populations 1.21781 0.94511 1.01727 1.02615 1.22178 0.96662 0.88500 1.00701 1.61858 1.12426 1.16366 1.34809 1.22444 1.02118 0.98715 0.89238 1.22770 0.89342 1.02303 0.96130 1.22104 0.88758 0.95358 0.89436 0.87868 1.86776 1.66325 1.19059 1.60472 1.22768 0.99293 1.03154 0.78735 1.47142 1.30731 1.23253 1.08103 1.23441 1.01675 0.97198 0.97932 1.22506 1.00471 0.99748 0.92238 1.18903 0.86003 0.90411 0.93747 1.42661 1.20052 1.16209 1.60663 1.19053 0.98097 0.99044 1.20972 0.88891 1.24632 0.97046 0.97741 0.99579 1.69696 1.12525 1.37077 1.38869 0.86539 0.77206 0.86319 0.78398 1.20943 1.21768 1.20642 1.75152 1.10849 1.06521 1.20315 1.78413 1.18728 1.20312 0.87264 0.91502 0.92749 0.92221 0.94942 0.90634 0.95730 0.90850 0.91353 0.89855 0.93491 0.78089 0.88180 0.87127 0.79506 0.93734 0.93485 0.80515 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.83 37.16 0.37 -0.58 16 2 C 0.05 0.32 5.53 -3.83 -0.02 0.30 16 3 N -0.53 -3.61 4.61 -242.91 -1.12 -4.73 16 4 C 0.02 0.12 9.27 60.07 0.56 0.68 16 5 C 0.02 0.13 4.63 -3.83 -0.02 0.11 16 6 C 0.10 0.80 3.18 -26.73 -0.09 0.71 16 7 H 0.10 0.95 6.55 -51.93 -0.34 0.61 16 8 O -0.52 -5.34 12.26 -35.23 -0.43 -5.77 16 9 C 0.08 0.62 6.14 -4.04 -0.02 0.60 16 10 N -0.30 -3.95 3.44 -61.26 -0.21 -4.16 16 11 C -0.05 -0.76 11.50 -17.04 -0.20 -0.95 16 12 C -0.01 -0.23 6.62 -82.78 -0.55 -0.77 16 13 C 0.24 4.92 6.82 -5.19 -0.04 4.89 16 14 N -0.75 -18.84 5.40 -61.08 -0.33 -19.17 16 15 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 16 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 17 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 18 N -0.93 -29.77 13.97 55.49 0.78 -29.00 16 19 Si 0.88 23.03 27.74 -169.99 -4.71 18.32 16 20 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 22 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 23 N -0.26 -5.26 12.41 33.29 0.41 -4.85 16 24 N -0.07 -1.17 12.09 60.35 0.73 -0.44 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.30 6.60 -51.93 -0.34 -0.04 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.03 0.20 8.11 -51.93 -0.42 -0.23 16 29 H 0.08 0.57 6.38 -51.92 -0.33 0.24 16 30 H 0.02 0.12 8.13 -51.93 -0.42 -0.30 16 31 H 0.07 0.38 6.57 -51.93 -0.34 0.04 16 32 H 0.07 0.31 7.96 -51.93 -0.41 -0.10 16 33 H 0.08 0.34 7.87 -51.92 -0.41 -0.07 16 34 H 0.05 0.20 8.05 -51.93 -0.42 -0.21 16 35 H 0.37 2.64 9.05 45.56 0.41 3.05 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.11 0.50 8.07 -51.93 -0.42 0.08 16 38 H 0.19 2.01 8.06 -52.48 -0.42 1.58 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.36 9.18 5.52 -40.82 -0.23 8.96 16 42 H 0.26 7.86 8.31 -40.82 -0.34 7.53 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -37.02 346.12 -5.73 -42.75 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.80 Total: 3.96 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.26 Total: -2.13 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.26 Total: -62.34 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.43 Total: -5.77 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.71 Total: 18.32 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.02 -5.73 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333547767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.633 kcal (2) G-P(sol) polarization free energy of solvation -37.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds