Wall clock time and date at job start Tue Mar 31 2020 02:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46748 * 2 1 4 4 N 1.46898 * 109.47532 * 120.00018 * 2 1 3 5 5 C 1.53002 * 109.47148 * 240.00180 * 2 1 3 6 6 N 1.46496 * 109.47004 * 184.99308 * 5 2 1 7 7 C 1.46510 * 119.99677 * 90.00062 * 6 5 2 8 8 C 1.34775 * 120.00781 * 270.00367 * 6 5 2 9 9 O 1.21348 * 119.99475 * 7.77195 * 8 6 5 10 10 C 1.49442 * 120.00289 * 187.77440 * 8 6 5 11 11 O 1.21351 * 120.00226 * 6.62716 * 10 8 6 12 12 N 1.34782 * 120.00075 * 186.62826 * 10 8 6 13 13 C 1.46498 * 120.00177 * 174.95648 * 12 10 8 14 14 C 1.53007 * 109.46812 * 185.16431 * 13 12 10 15 15 C 1.50693 * 115.55131 * 62.50424 * 14 13 12 16 16 H 1.07998 * 120.00065 * 272.06493 * 15 14 13 17 17 C 1.37881 * 119.99853 * 92.06480 * 15 14 13 18 18 N 1.31518 * 119.99586 * 182.63678 * 17 15 14 19 19 Si 1.86802 * 120.00314 * 2.64068 * 17 15 14 20 20 H 1.48492 * 109.47101 * 93.59964 * 19 17 15 21 21 H 1.48496 * 109.47163 * 213.60299 * 19 17 15 22 22 H 1.48506 * 109.46748 * 333.59903 * 19 17 15 23 23 C 1.53001 * 117.49436 * 276.83001 * 14 13 12 24 24 C 1.53004 * 117.49337 * 208.17347 * 14 13 12 25 25 H 1.08995 * 109.46958 * 299.99390 * 1 2 3 26 26 H 1.08994 * 109.47572 * 60.00186 * 1 2 3 27 27 H 1.09000 * 109.46748 * 180.02562 * 1 2 3 28 28 H 1.00903 * 110.99895 * 296.05492 * 4 2 1 29 29 H 1.00906 * 110.99877 * 59.99948 * 4 2 1 30 30 H 1.08994 * 109.47185 * 304.99883 * 5 2 1 31 31 H 1.09004 * 109.46534 * 65.00047 * 5 2 1 32 32 H 1.09000 * 109.46731 * 95.73553 * 7 6 5 33 33 H 1.08999 * 109.47191 * 215.73548 * 7 6 5 34 34 H 1.08999 * 109.46855 * 335.74129 * 7 6 5 35 35 H 0.97004 * 119.99330 * 354.94633 * 12 10 8 36 36 H 1.09000 * 109.46770 * 305.16097 * 13 12 10 37 37 H 1.08995 * 109.47571 * 65.16222 * 13 12 10 38 38 H 0.97002 * 119.99356 * 179.97438 * 18 17 15 39 39 H 1.08999 * 117.50021 * 0.02562 * 23 14 13 40 40 H 1.08997 * 117.49461 * 145.02368 * 23 14 13 41 41 H 1.08998 * 117.49730 * 214.97871 * 24 14 13 42 42 H 1.08999 * 117.49906 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2493 6 7 3.5001 -0.8262 -1.1907 7 6 4.1259 -1.9918 -0.5613 8 6 4.2676 0.1494 -1.7156 9 8 3.7569 1.1775 -2.1091 10 6 5.7474 -0.0349 -1.8131 11 8 6.2453 -1.1055 -1.5327 12 7 6.5291 0.9879 -2.2124 13 6 7.9868 0.8430 -2.2024 14 6 8.6346 2.1784 -2.5743 15 6 8.3644 3.3182 -1.6263 16 1 7.4896 3.9370 -1.7612 17 6 9.2340 3.5711 -0.5866 18 7 8.9712 4.5327 0.2713 19 14 10.7853 2.5479 -0.3965 20 1 11.9146 3.2300 -1.0778 21 1 11.1002 2.3897 1.0460 22 1 10.5740 1.2106 -1.0066 23 6 8.7615 2.5118 -4.0621 24 6 10.0050 2.1339 -3.2532 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.7503 -0.1990 2.0372 29 1 1.6963 -1.6480 1.2227 30 1 1.6055 -1.7197 -1.2952 31 1 1.7516 -0.1582 -2.1369 32 1 4.3752 -2.7274 -1.3259 33 1 5.0346 -1.6819 -0.0452 34 1 3.4335 -2.4332 0.1555 35 1 6.1263 1.8199 -2.5065 36 1 8.3154 0.5445 -1.2069 37 1 8.2814 0.0825 -2.9255 38 1 9.5829 4.7103 1.0029 39 1 8.3833 1.7801 -4.7759 40 1 8.6500 3.5557 -4.3551 41 1 10.7110 2.9293 -3.0145 42 1 10.4452 1.1534 -3.4346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348309720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:49 Heat of formation + Delta-G solvation = -35.500773 kcal Electronic energy + Delta-G solvation = -22946.125313 eV Core-core repulsion = 19541.492763 eV Total energy + Delta-G solvation = -3404.632550 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.41592 -38.45239 -37.06949 -36.88948 -34.68580 -33.28345 -32.10503 -29.52581 -27.73935 -27.21912 -26.16874 -25.26468 -22.68339 -21.79954 -21.01326 -19.63481 -18.96515 -17.44268 -16.76092 -16.59371 -16.20048 -15.69527 -15.28773 -15.08723 -14.61142 -14.52561 -13.96138 -13.89793 -13.27752 -13.23130 -12.91852 -12.77274 -12.68568 -12.50888 -12.35227 -12.10128 -11.97581 -11.76277 -11.26959 -11.16506 -10.95629 -10.91391 -10.45390 -10.20557 -9.61293 -9.18684 -9.10915 -8.94141 -8.67562 -8.57134 -8.51487 -8.36892 -6.13586 -4.18535 1.85161 2.67283 3.28121 3.39555 3.43806 3.63766 3.87782 4.33649 4.40467 4.63391 4.72868 4.85219 5.00973 5.05289 5.15125 5.18249 5.39703 5.44574 5.55888 5.65072 5.73780 5.82396 5.91741 5.99644 6.04030 6.12945 6.17452 6.40205 6.41803 6.48460 6.67827 6.89203 6.93877 6.98901 7.07193 7.23405 7.25175 7.67800 7.79880 8.17233 8.43115 8.52690 8.88137 9.48555 10.97745 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.004240 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.703375 B = 6602.589075 C = 6897.747517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 H 0.090 0.910 4 N -0.837 5.837 5 C 0.124 3.876 6 N -0.577 5.577 7 C 0.096 3.904 8 C 0.508 3.492 9 O -0.524 6.524 10 C 0.499 3.501 11 O -0.535 6.535 12 N -0.668 5.668 13 C 0.156 3.844 14 C -0.017 4.017 15 C -0.492 4.492 16 H 0.080 0.920 17 C 0.079 3.921 18 N -0.893 5.893 19 Si 0.881 3.119 20 H -0.280 1.280 21 H -0.295 1.295 22 H -0.256 1.256 23 C -0.180 4.180 24 C -0.191 4.191 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.342 0.658 29 H 0.335 0.665 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.415 0.585 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.423 -12.570 -1.757 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.046 4.046 3 H 0.108 0.892 4 N -0.366 5.366 5 C 0.001 3.999 6 N -0.310 5.310 7 C -0.046 4.046 8 C 0.291 3.709 9 O -0.400 6.400 10 C 0.279 3.721 11 O -0.414 6.414 12 N -0.318 5.318 13 C 0.033 3.967 14 C -0.018 4.018 15 C -0.529 4.529 16 H 0.098 0.902 17 C -0.124 4.124 18 N -0.530 5.530 19 Si 0.709 3.291 20 H -0.206 1.206 21 H -0.222 1.222 22 H -0.180 1.180 23 C -0.217 4.217 24 C -0.228 4.228 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.155 0.845 29 H 0.147 0.853 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.252 0.748 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.510 -12.525 -1.882 17.803 hybrid contribution -0.334 -0.130 0.466 0.588 sum -12.844 -12.655 -1.416 18.087 Atomic orbital electron populations 1.22568 0.97184 1.01872 1.02744 1.21904 0.92063 0.99734 0.90924 0.89200 1.58863 1.67423 1.06033 1.04330 1.21579 0.79532 1.00832 0.97983 1.47372 1.05690 1.21651 1.56284 1.21948 0.98876 0.86646 0.97135 1.20389 0.88323 0.83443 0.78759 1.90734 1.74735 1.26240 1.48250 1.19930 0.87429 0.85066 0.79644 1.90683 1.75497 1.25680 1.49556 1.45703 1.07570 1.16328 1.62157 1.21239 0.77426 0.96991 1.01030 1.19625 0.95463 0.94340 0.92389 1.20203 1.10927 1.11806 1.09945 0.90200 1.25009 0.97961 0.94568 0.94886 1.69900 1.37251 1.30777 1.15041 0.86836 0.83517 0.82120 0.76582 1.20624 1.22244 1.17986 1.22925 1.02494 1.01099 0.95191 1.22924 0.92021 1.01102 1.06775 0.92385 0.91717 0.92682 0.84512 0.85293 0.90508 0.89435 0.92907 0.89513 0.91530 0.74809 0.91267 0.93264 0.92494 0.90806 0.89249 0.89193 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 9.48 37.16 0.35 -0.99 16 2 C 0.07 0.66 3.66 -67.71 -0.25 0.41 16 3 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 4 N -0.84 -7.58 7.82 -4.67 -0.04 -7.62 16 5 C 0.12 1.32 5.03 -4.04 -0.02 1.29 16 6 N -0.58 -7.92 2.73 -182.08 -0.50 -8.42 16 7 C 0.10 1.20 8.70 59.85 0.52 1.72 16 8 C 0.51 8.79 7.70 -11.59 -0.09 8.70 16 9 O -0.52 -9.98 16.16 5.50 0.09 -9.89 16 10 C 0.50 9.47 7.66 -11.59 -0.09 9.39 16 11 O -0.54 -10.52 13.49 5.50 0.07 -10.44 16 12 N -0.67 -13.31 5.42 -60.73 -0.33 -13.64 16 13 C 0.16 3.27 5.41 -4.04 -0.02 3.25 16 14 C -0.02 -0.38 0.89 -155.66 -0.14 -0.51 16 15 C -0.49 -13.18 9.23 -34.44 -0.32 -13.50 16 16 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 19 Si 0.88 21.38 24.86 -169.99 -4.23 17.15 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.26 -5.86 6.11 56.52 0.35 -5.51 16 23 C -0.18 -3.50 9.96 -26.69 -0.27 -3.76 16 24 C -0.19 -3.91 7.08 -26.69 -0.19 -4.09 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.34 2.78 9.07 -39.29 -0.36 2.43 16 29 H 0.33 2.35 8.48 -39.29 -0.33 2.02 16 30 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.09 0.98 7.54 -51.93 -0.39 0.59 16 32 H 0.05 0.64 8.03 -51.93 -0.42 0.22 16 33 H 0.09 1.30 6.19 -51.93 -0.32 0.98 16 34 H 0.07 0.65 6.72 -51.93 -0.35 0.30 16 35 H 0.42 8.35 7.87 -40.82 -0.32 8.03 16 36 H 0.07 1.57 7.92 -51.93 -0.41 1.16 16 37 H 0.05 0.96 8.11 -51.93 -0.42 0.53 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.09 1.94 6.46 -51.93 -0.34 1.60 16 42 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -31.09 342.84 -6.24 -37.33 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -6.65 Total: 12.36 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.60 Total: 4.01 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.09 Total: -55.68 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.16 Total: -20.33 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.23 Total: 17.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.09 -6.24 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348309720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.827 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds