Wall clock time and date at job start Tue Mar 31 2020 02:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46748 * 2 1 4 4 N 1.46898 * 109.47532 * 120.00018 * 2 1 3 5 5 C 1.53002 * 109.47148 * 240.00180 * 2 1 3 6 6 N 1.46496 * 109.47004 * 184.99308 * 5 2 1 7 7 C 1.46510 * 119.99677 * 90.00062 * 6 5 2 8 8 C 1.34775 * 120.00781 * 270.00367 * 6 5 2 9 9 O 1.21348 * 119.99475 * 7.77195 * 8 6 5 10 10 C 1.49442 * 120.00289 * 187.77440 * 8 6 5 11 11 O 1.21351 * 120.00226 * 6.62716 * 10 8 6 12 12 N 1.34782 * 120.00075 * 186.62826 * 10 8 6 13 13 C 1.46498 * 120.00177 * 174.95648 * 12 10 8 14 14 C 1.53007 * 109.46812 * 185.16431 * 13 12 10 15 15 C 1.50693 * 115.55131 * 62.50424 * 14 13 12 16 16 H 1.07998 * 120.00065 * 272.06493 * 15 14 13 17 17 C 1.37881 * 119.99853 * 92.06480 * 15 14 13 18 18 N 1.31518 * 119.99586 * 182.63678 * 17 15 14 19 19 Si 1.86802 * 120.00314 * 2.64068 * 17 15 14 20 20 H 1.48492 * 109.47101 * 93.59964 * 19 17 15 21 21 H 1.48496 * 109.47163 * 213.60299 * 19 17 15 22 22 H 1.48506 * 109.46748 * 333.59903 * 19 17 15 23 23 C 1.53001 * 117.49436 * 276.83001 * 14 13 12 24 24 C 1.53004 * 117.49337 * 208.17347 * 14 13 12 25 25 H 1.08995 * 109.46958 * 299.99390 * 1 2 3 26 26 H 1.08994 * 109.47572 * 60.00186 * 1 2 3 27 27 H 1.09000 * 109.46748 * 180.02562 * 1 2 3 28 28 H 1.00903 * 110.99895 * 296.05492 * 4 2 1 29 29 H 1.00906 * 110.99877 * 59.99948 * 4 2 1 30 30 H 1.08994 * 109.47185 * 304.99883 * 5 2 1 31 31 H 1.09004 * 109.46534 * 65.00047 * 5 2 1 32 32 H 1.09000 * 109.46731 * 95.73553 * 7 6 5 33 33 H 1.08999 * 109.47191 * 215.73548 * 7 6 5 34 34 H 1.08999 * 109.46855 * 335.74129 * 7 6 5 35 35 H 0.97004 * 119.99330 * 354.94633 * 12 10 8 36 36 H 1.09000 * 109.46770 * 305.16097 * 13 12 10 37 37 H 1.08995 * 109.47571 * 65.16222 * 13 12 10 38 38 H 0.97002 * 119.99356 * 179.97438 * 18 17 15 39 39 H 1.08999 * 117.50021 * 0.02562 * 23 14 13 40 40 H 1.08997 * 117.49461 * 145.02368 * 23 14 13 41 41 H 1.08998 * 117.49730 * 214.97871 * 24 14 13 42 42 H 1.08999 * 117.49906 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2493 6 7 3.5001 -0.8262 -1.1907 7 6 4.1259 -1.9918 -0.5613 8 6 4.2676 0.1494 -1.7156 9 8 3.7569 1.1775 -2.1091 10 6 5.7474 -0.0349 -1.8131 11 8 6.2453 -1.1055 -1.5327 12 7 6.5291 0.9879 -2.2124 13 6 7.9868 0.8430 -2.2024 14 6 8.6346 2.1784 -2.5743 15 6 8.3644 3.3182 -1.6263 16 1 7.4896 3.9370 -1.7612 17 6 9.2340 3.5711 -0.5866 18 7 8.9712 4.5327 0.2713 19 14 10.7853 2.5479 -0.3965 20 1 11.9146 3.2300 -1.0778 21 1 11.1002 2.3897 1.0460 22 1 10.5740 1.2106 -1.0066 23 6 8.7615 2.5118 -4.0621 24 6 10.0050 2.1339 -3.2532 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.7503 -0.1990 2.0372 29 1 1.6963 -1.6480 1.2227 30 1 1.6055 -1.7197 -1.2952 31 1 1.7516 -0.1582 -2.1369 32 1 4.3752 -2.7274 -1.3259 33 1 5.0346 -1.6819 -0.0452 34 1 3.4335 -2.4332 0.1555 35 1 6.1263 1.8199 -2.5065 36 1 8.3154 0.5445 -1.2069 37 1 8.2814 0.0825 -2.9255 38 1 9.5829 4.7103 1.0029 39 1 8.3833 1.7801 -4.7759 40 1 8.6500 3.5557 -4.3551 41 1 10.7110 2.9293 -3.0145 42 1 10.4452 1.1534 -3.4346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348309720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:49 Heat of formation + Delta-G solvation = -60.185420 kcal Electronic energy + Delta-G solvation = -22947.195719 eV Core-core repulsion = 19541.492763 eV Total energy + Delta-G solvation = -3405.702956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.77916 -39.86255 -38.70633 -37.95704 -35.81440 -34.76546 -34.20507 -30.30700 -29.05971 -28.28989 -27.75040 -26.93480 -23.96928 -23.38730 -21.95441 -21.26851 -20.50415 -18.89211 -18.25604 -17.91527 -17.46947 -16.99651 -16.85245 -16.64924 -16.01540 -15.62607 -15.34464 -15.13305 -14.76828 -14.70091 -14.29968 -14.07518 -13.81042 -13.69026 -13.66545 -13.32744 -13.08258 -12.94221 -12.75135 -12.59706 -12.43785 -12.15559 -11.98900 -11.94740 -11.53678 -11.00823 -10.65022 -10.58145 -10.27311 -10.06690 -9.82360 -9.45156 -8.29191 -6.37409 0.42625 1.34966 1.39725 1.41459 1.53061 2.20873 2.37614 2.55822 3.04929 3.19556 3.48685 3.63219 3.86388 3.99078 4.05286 4.28781 4.33691 4.38926 4.43499 4.50402 4.52094 4.67766 4.73818 4.83111 4.85638 4.87234 5.05986 5.08691 5.09166 5.19635 5.26053 5.35793 5.47582 5.49104 5.68718 5.98399 6.26713 6.27704 6.35802 6.64444 6.71608 6.75941 7.02338 7.33082 8.85990 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.004240 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.703375 B = 6602.589075 C = 6897.747517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 H 0.050 0.950 4 N -0.847 5.847 5 C 0.118 3.882 6 N -0.565 5.565 7 C 0.097 3.903 8 C 0.502 3.498 9 O -0.551 6.551 10 C 0.496 3.504 11 O -0.541 6.541 12 N -0.675 5.675 13 C 0.165 3.835 14 C -0.044 4.044 15 C -0.484 4.484 16 H 0.036 0.964 17 C 0.020 3.980 18 N -0.947 5.947 19 Si 0.939 3.061 20 H -0.268 1.268 21 H -0.305 1.305 22 H -0.229 1.229 23 C -0.158 4.158 24 C -0.184 4.184 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.347 0.653 29 H 0.349 0.651 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.412 0.588 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.265 0.735 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 -15.573 -2.723 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.041 4.041 3 H 0.069 0.931 4 N -0.379 5.379 5 C -0.004 4.004 6 N -0.296 5.296 7 C -0.044 4.044 8 C 0.284 3.716 9 O -0.430 6.430 10 C 0.277 3.723 11 O -0.421 6.421 12 N -0.325 5.325 13 C 0.041 3.959 14 C -0.046 4.046 15 C -0.522 4.522 16 H 0.054 0.946 17 C -0.177 4.177 18 N -0.587 5.587 19 Si 0.764 3.236 20 H -0.194 1.194 21 H -0.233 1.233 22 H -0.152 1.152 23 C -0.195 4.195 24 C -0.221 4.221 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.161 0.839 29 H 0.164 0.836 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.248 0.752 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.844 -15.583 -2.861 20.395 hybrid contribution -0.366 0.804 0.773 1.173 sum -13.209 -14.779 -2.088 19.931 Atomic orbital electron populations 1.22458 0.94780 1.03291 1.02830 1.21711 0.93831 0.97571 0.91019 0.93133 1.58807 1.67901 1.07003 1.04195 1.21893 0.77414 1.03022 0.98078 1.47525 1.06934 1.20748 1.54350 1.22000 0.98656 0.86042 0.97738 1.20184 0.87758 0.84072 0.79572 1.90723 1.74827 1.27398 1.50062 1.20279 0.88310 0.84661 0.79006 1.90670 1.75984 1.25796 1.49613 1.45748 1.07477 1.16548 1.62745 1.21056 0.77832 0.96504 1.00467 1.19471 0.98165 0.93521 0.93399 1.20356 1.08941 1.12281 1.10622 0.94608 1.25866 1.01456 0.95758 0.94669 1.70055 1.38907 1.33390 1.16310 0.85906 0.79686 0.81827 0.76161 1.19394 1.23253 1.15201 1.22950 1.01248 1.01697 0.93633 1.23016 0.91176 1.02387 1.05571 0.92109 0.91896 0.90510 0.83940 0.83628 0.86693 0.90170 0.92092 0.92197 0.88270 0.75236 0.93350 0.90801 0.92661 0.87641 0.89953 0.90309 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.48 71.98 0.68 -1.49 16 2 C 0.07 1.34 3.66 44.92 0.16 1.50 16 3 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 4 N -0.85 -13.83 7.82 -168.67 -1.32 -15.15 16 5 C 0.12 2.27 5.03 86.38 0.43 2.71 16 6 N -0.56 -14.79 2.73 -848.35 -2.32 -17.10 16 7 C 0.10 2.22 8.70 127.77 1.11 3.33 16 8 C 0.50 17.40 7.70 87.27 0.67 18.07 16 9 O -0.55 -21.54 16.16 -3.24 -0.05 -21.60 16 10 C 0.50 18.76 7.66 87.27 0.67 19.43 16 11 O -0.54 -20.80 13.49 -3.25 -0.04 -20.84 16 12 N -0.68 -26.97 5.42 -464.41 -2.52 -29.48 16 13 C 0.16 6.68 5.41 86.38 0.47 7.15 16 14 C -0.04 -1.93 0.89 -52.93 -0.05 -1.97 16 15 C -0.48 -26.69 9.23 25.60 0.24 -26.45 16 16 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 17 C 0.02 1.16 5.47 84.66 0.46 1.62 16 18 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 19 Si 0.94 43.99 24.86 68.60 1.71 45.69 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 22 H -0.23 -9.67 6.11 99.48 0.61 -9.06 16 23 C -0.16 -5.77 9.96 30.62 0.30 -5.47 16 24 C -0.18 -6.98 7.08 30.62 0.22 -6.76 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.35 5.19 9.07 -89.69 -0.81 4.38 16 29 H 0.35 3.82 8.48 -89.69 -0.76 3.06 16 30 H 0.12 1.38 8.07 -2.39 -0.02 1.36 16 31 H 0.08 1.71 7.54 -2.39 -0.02 1.69 16 32 H 0.06 1.32 8.03 -2.39 -0.02 1.30 16 33 H 0.06 1.74 6.19 -2.39 -0.01 1.72 16 34 H 0.10 1.60 6.72 -2.39 -0.02 1.59 16 35 H 0.41 17.01 7.87 -92.71 -0.73 16.28 16 36 H 0.05 2.14 7.92 -2.39 -0.02 2.13 16 37 H 0.07 2.64 8.11 -2.39 -0.02 2.62 16 38 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.08 3.19 6.46 -2.39 -0.02 3.17 16 42 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -70.21 342.84 -0.22 -70.42 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -1.35 Total: 35.26 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 5.38 Total: 11.66 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -5.85 Total: -120.61 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.10 Total: -42.43 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.71 Total: 45.69 kcal Total: -70.21 -0.22 -70.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348309720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.239 kcal (2) G-P(sol) polarization free energy of solvation -70.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds