Wall clock time and date at job start Tue Mar 31 2020 03:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00294 * 2 1 4 4 C 1.50698 * 109.47054 * 66.04159 * 3 2 1 5 5 H 1.07995 * 120.00548 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99811 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99727 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99949 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.46967 * 89.99823 * 8 6 4 10 10 H 1.48498 * 109.47031 * 209.99989 * 8 6 4 11 11 H 1.48501 * 109.46919 * 330.00193 * 8 6 4 12 12 C 1.46902 * 110.99990 * 236.04210 * 2 1 3 13 13 C 1.53001 * 109.46739 * 199.85502 * 12 2 1 14 14 H 1.08998 * 109.47034 * 300.45587 * 13 12 2 15 15 O 1.42895 * 109.47438 * 60.46649 * 13 12 2 16 16 C 1.53006 * 109.46766 * 180.46560 * 13 12 2 17 17 N 1.46894 * 109.47382 * 180.02562 * 16 13 12 18 18 C 1.46898 * 111.00394 * 179.97438 * 17 16 13 19 19 C 1.52996 * 109.47438 * 179.97438 * 18 17 16 20 20 N 1.46496 * 109.47379 * 180.02562 * 19 18 17 21 21 C 1.34429 * 126.82654 * 124.99837 * 20 19 18 22 22 N 1.30831 * 108.07629 * 179.97438 * 21 20 19 23 23 C 1.33245 * 109.83170 * 0.02562 * 22 21 20 24 24 N 1.30707 * 108.94520 * 0.26213 * 23 22 21 25 25 H 1.08999 * 109.47616 * 188.77679 * 1 2 3 26 26 H 1.09006 * 109.46840 * 308.77743 * 1 2 3 27 27 H 1.09000 * 109.46686 * 68.77410 * 1 2 3 28 28 H 1.08999 * 109.46894 * 186.04368 * 3 2 1 29 29 H 1.08996 * 109.46568 * 306.04574 * 3 2 1 30 30 H 0.97004 * 119.99826 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46867 * 79.85086 * 12 2 1 32 32 H 1.08995 * 109.47078 * 319.85105 * 12 2 1 33 33 H 0.96695 * 114.00057 * 59.99812 * 15 13 12 34 34 H 1.08994 * 109.47135 * 59.99542 * 16 13 12 35 35 H 1.09006 * 109.46888 * 299.99887 * 16 13 12 36 36 H 1.00903 * 110.99656 * 303.95521 * 17 16 13 37 37 H 1.09005 * 109.46657 * 59.99728 * 18 17 16 38 38 H 1.09000 * 109.47171 * 300.00006 * 18 17 16 39 39 H 1.09005 * 109.47219 * 59.99766 * 19 18 17 40 40 H 1.09000 * 109.47155 * 300.00274 * 19 18 17 41 41 H 1.07992 * 125.96058 * 359.97438 * 21 20 19 42 42 H 1.08002 * 125.52436 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5114 2.0487 6 6 2.0278 3.3492 1.5288 7 7 1.7153 3.9387 2.6621 8 14 3.0011 4.2758 0.2313 9 1 2.0646 4.9803 -0.6808 10 1 3.8883 5.2666 0.8918 11 1 3.8241 3.3168 -0.5487 12 6 1.9954 -0.7661 -1.1375 13 6 3.4448 -1.1668 -0.8554 14 1 4.0463 -0.2707 -0.7026 15 8 3.4944 -1.9798 0.3186 16 6 3.9969 -1.9547 -2.0452 17 7 5.3883 -2.3400 -1.7742 18 6 5.9523 -3.1005 -2.8973 19 6 7.3992 -3.4826 -2.5791 20 7 7.9619 -4.2405 -3.6994 21 6 9.0858 -3.9571 -4.3803 22 7 9.2436 -4.8720 -5.3021 23 6 8.2448 -5.7519 -5.2413 24 7 7.4310 -5.4044 -4.2794 25 1 -0.3634 -1.0156 0.1568 26 1 -0.3633 0.6437 0.8012 27 1 -0.3633 0.3721 -0.9580 28 1 3.0798 1.3443 -0.1082 29 1 1.5612 1.9272 -0.8309 30 1 1.9905 4.8546 2.8244 31 1 1.9566 -0.1527 -2.0377 32 1 1.3923 -1.6623 -1.2822 33 1 2.9802 -2.7961 0.2537 34 1 3.9590 -1.3346 -2.9407 35 1 3.3953 -2.8508 -2.1981 36 1 5.9534 -1.5306 -1.5650 37 1 5.9284 -2.4884 -3.7989 38 1 5.3640 -4.0043 -3.0560 39 1 7.4235 -4.0945 -1.6773 40 1 7.9873 -2.5786 -2.4207 41 1 9.7435 -3.1202 -4.1982 42 1 8.1246 -6.6102 -5.8858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348958275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:35 Heat of formation + Delta-G solvation = 27.552430 kcal Electronic energy + Delta-G solvation = -21707.149165 eV Core-core repulsion = 18337.543559 eV Total energy + Delta-G solvation = -3369.605606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.175 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.98625 -39.59949 -37.80911 -36.67824 -34.65186 -34.58178 -32.18912 -31.54463 -30.10354 -29.18213 -26.74161 -25.07840 -23.92807 -23.00273 -22.76354 -22.17859 -21.56237 -19.05059 -18.31000 -17.76147 -17.06589 -16.91036 -16.42086 -16.24689 -15.92723 -15.85198 -15.80714 -15.15261 -14.98788 -14.70789 -14.47209 -14.37038 -14.19913 -13.58937 -13.25351 -13.16946 -13.06985 -12.78786 -12.63447 -12.52761 -12.19230 -12.13599 -11.80915 -11.63837 -11.42955 -11.04144 -10.84149 -10.78698 -10.77161 -10.57683 -9.48425 -8.95666 -8.27520 -6.30556 0.68706 1.32735 1.35216 1.35480 1.45811 2.00534 2.34207 2.86185 3.05436 3.34643 3.52460 3.54634 3.74886 3.90899 3.92964 4.08788 4.14986 4.21925 4.32479 4.34641 4.43098 4.50858 4.58557 4.68292 4.71839 4.76062 4.82101 4.91875 4.99928 5.16908 5.20840 5.26487 5.46724 5.55752 5.82031 5.90912 6.00034 6.31019 6.38362 6.66901 6.75872 7.11254 7.12712 7.32421 8.89467 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024745 B = 0.002761 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.268745 B =10137.570463 C =10836.630429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.173 3.827 4 C -0.515 4.515 5 H 0.035 0.965 6 C 0.003 3.997 7 N -0.950 5.950 8 Si 0.949 3.051 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.246 1.246 12 C 0.023 3.977 13 C 0.123 3.877 14 H 0.072 0.928 15 O -0.552 6.552 16 C 0.043 3.957 17 N -0.681 5.681 18 C 0.061 3.939 19 C 0.132 3.868 20 N -0.381 5.381 21 C 0.260 3.740 22 N -0.581 5.581 23 C 0.190 3.810 24 N -0.353 5.353 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.022 0.978 28 H 0.029 0.971 29 H -0.016 1.016 30 H 0.266 0.734 31 H 0.039 0.961 32 H 0.093 0.907 33 H 0.378 0.622 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.349 0.651 37 H 0.032 0.968 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.135 0.865 41 H 0.259 0.741 42 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.395 -15.759 -17.213 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.265 5.265 3 C 0.046 3.954 4 C -0.553 4.553 5 H 0.053 0.947 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.772 3.228 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.170 1.170 12 C -0.106 4.106 13 C 0.063 3.937 14 H 0.090 0.910 15 O -0.357 6.357 16 C -0.087 4.087 17 N -0.313 5.313 18 C -0.069 4.069 19 C 0.010 3.990 20 N -0.172 5.172 21 C -0.036 4.036 22 N -0.309 5.309 23 C -0.112 4.112 24 N -0.181 5.181 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.001 0.999 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.225 0.775 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.168 0.832 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.153 0.847 41 H 0.275 0.725 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 12.345 -16.276 -16.086 26.002 hybrid contribution -0.432 1.613 -1.450 2.211 sum 11.913 -14.663 -17.536 25.777 Atomic orbital electron populations 1.22226 0.87452 1.01650 0.99578 1.61729 1.07920 1.14562 1.42316 1.19946 0.95219 0.85935 0.94274 1.21283 1.34670 0.97419 1.01949 0.94699 1.25907 0.97092 0.98509 0.97831 1.70061 1.48685 1.13874 1.26427 0.85691 0.79235 0.78700 0.79149 1.19347 1.20657 1.16999 1.22858 0.97234 0.98822 0.91721 1.21728 0.94039 0.92880 0.85075 0.90977 1.86637 1.74191 1.36779 1.38139 1.22515 0.90011 0.99819 0.96375 1.60191 1.02898 1.28851 1.39384 1.21984 0.94548 0.98490 0.91884 1.21885 0.94778 0.96598 0.85724 1.50630 1.19404 1.19841 1.27357 1.26926 0.89172 0.99468 0.88023 1.70571 1.28210 1.06888 1.25213 1.26562 0.88458 1.00076 0.96134 1.78006 1.24222 1.01364 1.14501 0.90327 0.93571 0.95958 0.95304 0.99873 0.92480 0.94237 0.88822 0.77482 0.93619 0.89565 0.83213 0.94960 0.91226 0.88522 0.84715 0.72537 0.74559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.44 9.37 127.69 1.20 2.64 16 2 N -0.54 -21.68 4.56 -927.05 -4.22 -25.91 16 3 C 0.17 8.21 3.62 85.56 0.31 8.52 16 4 C -0.51 -30.07 8.94 25.60 0.23 -29.84 16 5 H 0.03 2.29 7.41 -2.91 -0.02 2.27 16 6 C 0.00 0.20 5.47 84.66 0.46 0.67 16 7 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 8 Si 0.95 43.61 27.47 68.60 1.88 45.50 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 12 C 0.02 0.65 4.66 86.30 0.40 1.05 16 13 C 0.12 3.31 3.24 30.60 0.10 3.41 16 14 H 0.07 2.30 6.78 -2.39 -0.02 2.28 16 15 O -0.55 -16.73 13.08 -148.98 -1.95 -18.67 16 16 C 0.04 0.81 5.35 86.31 0.46 1.27 16 17 N -0.68 -11.69 6.37 -513.89 -3.27 -14.96 16 18 C 0.06 0.89 5.89 86.30 0.51 1.40 16 19 C 0.13 1.46 6.81 86.38 0.59 2.05 16 20 N -0.38 -5.76 3.69 -352.08 -1.30 -7.06 16 21 C 0.26 3.29 12.63 180.36 2.28 5.57 16 22 N -0.58 -10.50 11.19 -204.01 -2.28 -12.78 16 23 C 0.19 3.32 13.03 180.77 2.36 5.67 16 24 N -0.35 -7.06 12.56 -61.24 -0.77 -7.83 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 26 H 0.05 2.02 6.67 -2.38 -0.02 2.00 16 27 H 0.02 0.74 8.13 -2.39 -0.02 0.72 16 28 H 0.03 1.36 5.69 -2.39 -0.01 1.35 16 29 H -0.02 -0.76 7.55 -2.39 -0.02 -0.77 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.04 1.09 8.00 -2.39 -0.02 1.07 16 32 H 0.09 2.18 7.94 -2.39 -0.02 2.16 16 33 H 0.38 8.67 9.04 -74.06 -0.67 8.00 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.35 5.54 8.73 -89.69 -0.78 4.76 16 37 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.13 0.60 8.09 -2.39 -0.02 0.58 16 41 H 0.26 0.64 8.06 -2.91 -0.02 0.62 16 42 H 0.24 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -78.57 349.93 -3.21 -81.77 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.48 Total: 17.11 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 8.89 Total: 2.41 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -11.55 Total: -128.11 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -1.95 Total: -18.67 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.50 kcal Total: -78.57 -3.21 -81.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348958275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.326 kcal (2) G-P(sol) polarization free energy of solvation -78.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds