Wall clock time and date at job start Tue Mar 31 2020 03:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47096 * 125.55929 * 2 1 4 4 C 1.54096 * 103.77442 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.63253 * 241.30559 * 4 3 2 6 6 C 1.52993 * 110.52060 * 118.62860 * 4 3 2 7 7 N 1.46908 * 109.47110 * 183.95578 * 6 4 3 8 8 C 1.46956 * 110.99627 * 293.79849 * 7 6 4 9 9 C 1.53049 * 109.36271 * 176.81005 * 8 7 6 10 10 N 1.46952 * 109.36524 * 58.40025 * 9 8 7 11 11 C 1.46903 * 111.00477 * 176.80923 * 10 9 8 12 12 C 1.50703 * 109.46490 * 58.99302 * 11 10 9 13 13 H 1.07998 * 120.00598 * 4.99592 * 12 11 10 14 14 C 1.37881 * 119.99957 * 184.98926 * 12 11 10 15 15 N 1.31511 * 120.00291 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99794 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47078 * 90.00096 * 16 14 12 18 18 H 1.48500 * 109.47224 * 210.00132 * 16 14 12 19 19 H 1.48505 * 109.47320 * 330.00152 * 16 14 12 20 20 C 1.46954 * 110.88301 * 300.68239 * 10 9 8 21 21 C 1.46954 * 111.00073 * 170.00097 * 7 6 4 22 22 O 1.45697 * 104.00774 * 359.97438 * 4 3 2 23 23 C 1.33771 * 109.48058 * 0.02562 * 22 4 3 24 24 O 1.21505 * 123.07019 * 180.02562 * 23 22 4 25 25 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46989 * 300.00629 * 1 2 3 27 27 H 1.08997 * 109.46973 * 60.00741 * 1 2 3 28 28 H 1.08990 * 110.56686 * 61.44312 * 3 2 1 29 29 H 1.09002 * 110.55710 * 298.58765 * 3 2 1 30 30 H 1.08999 * 109.47400 * 303.95546 * 6 4 3 31 31 H 1.08998 * 109.47587 * 63.95672 * 6 4 3 32 32 H 1.09001 * 109.49392 * 296.77861 * 8 7 6 33 33 H 1.09005 * 109.48777 * 56.84571 * 8 7 6 34 34 H 1.09001 * 109.49104 * 298.43566 * 9 8 7 35 35 H 1.08997 * 109.50907 * 178.38457 * 9 8 7 36 36 H 1.08998 * 109.47484 * 178.99070 * 11 10 9 37 37 H 1.09001 * 109.46938 * 298.99998 * 11 10 9 38 38 H 0.96994 * 120.00157 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.49015 * 299.34981 * 20 10 9 40 40 H 1.09005 * 109.50946 * 179.29538 * 20 10 9 41 41 H 1.09004 * 109.48898 * 303.15709 * 21 7 6 42 42 H 1.09005 * 109.49029 * 63.19787 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3204 1.1966 0.0000 4 6 3.7513 0.6248 -0.0007 5 1 4.2901 0.9368 0.8941 6 6 4.5036 1.0635 -1.2585 7 7 5.8290 0.4302 -1.2823 8 6 6.6700 0.9274 -0.1845 9 6 8.0096 0.1874 -0.1963 10 7 8.6678 0.3918 -1.4942 11 6 9.9931 -0.2414 -1.5181 12 6 9.8490 -1.7181 -1.2538 13 1 8.8664 -2.1575 -1.1653 14 6 10.9716 -2.5082 -1.1252 15 7 10.8459 -3.7969 -0.8951 16 14 12.6711 -1.7481 -1.2778 17 1 13.1358 -1.3020 0.0601 18 1 13.6174 -2.7561 -1.8198 19 1 12.6113 -0.5818 -2.1953 20 6 7.8268 -0.1053 -2.5921 21 6 6.4871 0.6347 -2.5802 22 8 3.5542 -0.8188 -0.0003 23 6 2.2443 -1.0902 -0.0002 24 8 1.8016 -2.2217 0.0006 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 2.1462 1.7918 0.8963 29 1 2.1457 1.7920 -0.8962 30 1 3.9411 0.7622 -2.1421 31 1 4.6190 2.1474 -1.2535 32 1 6.8435 1.9957 -0.3143 33 1 6.1667 0.7533 0.7666 34 1 7.8382 -0.8775 -0.0393 35 1 8.6462 0.5744 0.5993 36 1 10.4505 -0.0902 -2.4958 37 1 10.6231 0.2055 -0.7490 38 1 11.6357 -4.3528 -0.8050 39 1 7.6533 -1.1735 -2.4623 40 1 8.3298 0.0685 -3.5434 41 1 5.8506 0.2474 -3.3758 42 1 6.6582 1.6997 -2.7375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349658977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:13 Heat of formation + Delta-G solvation = -42.084499 kcal Electronic energy + Delta-G solvation = -23069.036930 eV Core-core repulsion = 19664.118888 eV Total energy + Delta-G solvation = -3404.918041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69069 -38.85940 -37.30975 -35.61528 -35.29156 -32.44316 -31.22881 -30.38350 -28.74825 -27.44176 -25.76826 -24.06560 -23.19814 -22.21075 -21.39296 -20.85160 -19.07747 -17.67269 -17.15492 -16.77603 -16.68669 -15.89114 -15.19655 -14.81400 -14.56052 -14.37530 -14.27126 -14.24522 -14.03257 -13.75240 -13.34349 -12.84826 -12.67059 -12.52406 -12.37294 -12.11449 -12.01477 -11.84609 -11.22159 -10.99358 -10.82075 -10.67276 -10.62412 -10.45948 -10.18821 -10.10486 -9.87666 -9.44863 -9.21272 -8.55994 -8.15090 -7.20210 -6.05810 -4.06097 2.30923 2.67429 3.29267 3.29857 3.37116 3.40399 3.66831 4.15555 4.32727 4.41467 4.42294 4.75760 4.87849 4.92402 4.96623 5.08866 5.19833 5.26567 5.29953 5.37840 5.47542 5.54136 5.60405 5.75011 5.82737 5.90010 6.06856 6.13816 6.24156 6.52527 6.79176 6.86907 6.92994 7.06570 7.17078 7.25239 7.30187 7.58473 7.94730 8.05526 8.08900 8.48854 8.98854 9.56187 11.07073 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.003663 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.704727 B = 7641.679583 C = 8179.636557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.640 5.640 3 C 0.073 3.927 4 C 0.074 3.926 5 H 0.116 0.884 6 C 0.049 3.951 7 N -0.529 5.529 8 C 0.057 3.943 9 C 0.062 3.938 10 N -0.537 5.537 11 C 0.155 3.845 12 C -0.552 4.552 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C 0.061 3.939 21 C 0.063 3.937 22 O -0.295 6.295 23 C 0.638 3.362 24 O -0.525 6.525 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.408 16.053 1.032 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.390 5.390 3 C -0.051 4.051 4 C 0.017 3.983 5 H 0.134 0.866 6 C -0.080 4.080 7 N -0.254 5.254 8 C -0.071 4.071 9 C -0.067 4.067 10 N -0.261 5.261 11 C 0.029 3.971 12 C -0.590 4.590 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.068 4.068 21 C -0.065 4.065 22 O -0.204 6.204 23 C 0.393 3.607 24 O -0.410 6.410 25 H 0.107 0.893 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -18.324 15.127 1.048 23.785 hybrid contribution 0.930 0.388 -0.010 1.008 sum -17.394 15.515 1.038 23.332 Atomic orbital electron populations 1.21460 0.75219 1.04301 1.01617 1.47966 1.07389 1.05968 1.77700 1.22813 0.88846 0.89122 1.04339 1.23944 0.95150 0.77623 1.01585 0.86620 1.22396 0.91980 0.97041 0.96568 1.62057 1.01529 1.57467 1.04325 1.22310 0.94263 0.96990 0.93546 1.21939 0.92094 1.00127 0.92511 1.62637 1.04257 1.57009 1.02230 1.20139 0.86601 0.93572 0.96812 1.21718 0.95209 0.92138 1.49967 0.90415 1.24984 0.99166 0.94661 0.94267 1.69937 1.29814 1.04872 1.48892 0.86805 0.84440 0.79330 0.78826 1.20254 1.21365 1.18963 1.21959 0.91046 0.98638 0.95143 1.22207 0.95802 0.98602 0.89872 1.87534 1.21917 1.24874 1.86100 1.18714 0.80571 0.85386 0.76058 1.91029 1.73881 1.20713 1.55355 0.89341 0.91774 0.91759 0.88967 0.89009 0.89953 0.92488 0.94684 0.91191 0.92302 0.91320 0.95546 0.95730 0.92708 0.92641 0.91294 0.91110 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.76 11.23 59.85 0.67 1.44 16 2 N -0.64 -6.29 3.36 -186.77 -0.63 -6.92 16 3 C 0.07 0.48 7.34 -3.14 -0.02 0.45 16 4 C 0.07 0.72 3.68 -26.16 -0.10 0.62 16 5 H 0.12 0.98 6.61 -51.93 -0.34 0.64 16 6 C 0.05 0.50 4.52 -3.82 -0.02 0.48 16 7 N -0.53 -7.79 4.64 -234.46 -1.09 -8.87 16 8 C 0.06 0.84 5.42 -3.77 -0.02 0.82 16 9 C 0.06 1.20 5.24 -3.77 -0.02 1.18 16 10 N -0.54 -11.11 4.92 -235.91 -1.16 -12.27 16 11 C 0.16 3.74 4.21 -4.97 -0.02 3.72 16 12 C -0.55 -15.53 8.21 -34.44 -0.28 -15.81 16 13 H 0.08 2.42 6.07 -52.49 -0.32 2.10 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 16 Si 0.88 21.55 27.37 -169.99 -4.65 16.90 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.27 -6.24 6.69 56.52 0.38 -5.86 16 20 C 0.06 1.17 5.32 -3.77 -0.02 1.15 16 21 C 0.06 0.95 5.61 -3.77 -0.02 0.92 16 22 O -0.30 -4.51 10.72 -37.83 -0.41 -4.92 16 23 C 0.64 9.53 8.85 53.71 0.48 10.00 16 24 O -0.52 -9.94 17.31 -19.11 -0.33 -10.27 16 25 H 0.09 0.71 7.53 -51.93 -0.39 0.32 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.42 7.73 -51.93 -0.40 0.01 16 30 H 0.08 0.83 8.03 -51.93 -0.42 0.42 16 31 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.91 6.38 -51.93 -0.33 0.58 16 34 H 0.06 1.36 6.62 -51.93 -0.34 1.01 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.03 0.64 7.52 -51.93 -0.39 0.25 16 37 H 0.02 0.59 7.29 -51.93 -0.38 0.21 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.06 1.26 6.78 -51.93 -0.35 0.91 16 40 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 41 H 0.07 0.96 8.07 -51.93 -0.42 0.55 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 330.29 15.07 4.98 4.98 Total: -1.00 -35.72 330.29 -8.61 -44.33 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.63 Total: -2.89 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 0.53 Total: 6.96 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -2.10 Total: -55.10 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.74 Total: -15.18 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.65 Total: 16.90 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.72 -8.61 -44.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349658977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.248 kcal (2) G-P(sol) polarization free energy of solvation -35.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds