Wall clock time and date at job start Tue Mar 31 2020 02:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46551 * 2 1 4 4 C 1.53000 * 109.46667 * 119.99396 * 2 1 3 5 5 N 1.46504 * 109.46599 * 175.00141 * 4 2 1 6 6 C 1.34773 * 119.99779 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00106 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00194 * 180.02562 * 6 5 4 9 9 H 1.09006 * 109.60091 * 59.67711 * 8 6 5 10 10 C 1.53341 * 109.60849 * 180.02562 * 8 6 5 11 11 C 1.53062 * 108.42835 * 187.45107 * 10 8 6 12 12 C 1.50175 * 109.89093 * 311.10068 * 11 10 8 13 13 O 1.21288 * 118.24253 * 197.58329 * 12 11 10 14 14 N 1.33346 * 123.50876 * 17.85801 * 12 11 10 15 15 C 1.45771 * 124.09058 * 357.21382 * 14 12 11 16 16 N 1.46500 * 109.47203 * 239.99655 * 2 1 3 17 17 C 1.46496 * 120.00057 * 299.99674 * 16 2 1 18 18 C 1.36937 * 119.99868 * 119.99899 * 16 2 1 19 19 H 1.08002 * 119.99738 * 22.82253 * 18 16 2 20 20 C 1.38813 * 120.00064 * 202.81844 * 18 16 2 21 21 N 1.31616 * 119.99665 * 11.59113 * 20 18 16 22 22 Si 1.86797 * 120.00038 * 191.58855 * 20 18 16 23 23 H 1.48494 * 109.46996 * 90.00175 * 22 20 18 24 24 H 1.48497 * 109.47022 * 210.00285 * 22 20 18 25 25 H 1.48504 * 109.47088 * 330.00053 * 22 20 18 26 26 H 1.09004 * 109.47074 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47323 * 300.00434 * 1 2 3 28 28 H 1.09007 * 109.47148 * 60.00899 * 1 2 3 29 29 H 1.08995 * 109.47069 * 55.00919 * 4 2 1 30 30 H 1.09003 * 109.47310 * 294.99940 * 4 2 1 31 31 H 0.97001 * 120.00423 * 0.02562 * 5 4 2 32 32 H 1.08997 * 109.67533 * 67.71180 * 10 8 6 33 33 H 1.09006 * 109.67082 * 307.18456 * 10 8 6 34 34 H 1.09003 * 109.40093 * 190.96740 * 11 10 8 35 35 H 1.09009 * 109.33312 * 71.18376 * 11 10 8 36 36 H 0.97000 * 117.94624 * 177.47163 * 14 12 11 37 37 H 1.09008 * 109.50597 * 259.16716 * 15 14 12 38 38 H 1.09000 * 109.15909 * 139.75939 * 15 14 12 39 39 H 1.09006 * 109.47237 * 93.85680 * 17 16 2 40 40 H 1.08995 * 109.47638 * 213.85062 * 17 16 2 41 41 H 1.08998 * 109.47343 * 333.86084 * 17 16 2 42 42 H 0.97002 * 120.00058 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1730 -1.4280 2.1913 7 8 3.5699 -1.8829 3.1402 8 6 5.6750 -1.5357 2.1314 9 1 6.1113 -0.5381 2.0794 10 6 6.1895 -2.2582 3.3822 11 6 7.7185 -2.1885 3.3867 12 6 8.2529 -2.6030 2.0459 13 8 9.4217 -2.9169 1.9659 14 7 7.5123 -2.6393 0.9375 15 6 6.0863 -2.3399 0.8975 16 7 2.0184 -0.6907 -1.1961 17 6 1.6646 -2.0932 -1.4278 18 6 2.8057 -0.0252 -2.0975 19 1 3.3666 0.8437 -1.7864 20 6 2.8828 -0.4674 -3.4111 21 7 2.0368 -1.3748 -3.8506 22 14 4.1871 0.2254 -4.5548 23 1 5.4154 -0.6043 -4.4649 24 1 3.6803 0.2100 -5.9505 25 1 4.5024 1.6213 -4.1581 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 1.6054 -1.7197 1.2952 30 1 1.7516 -0.1581 2.1370 31 1 3.9825 -0.4621 0.4320 32 1 5.8697 -3.3000 3.3619 33 1 5.7973 -1.7708 4.2749 34 1 8.1092 -2.8564 4.1545 35 1 8.0326 -1.1670 3.6016 36 1 7.9492 -2.8837 0.1067 37 1 5.5196 -3.2707 0.8688 38 1 5.8674 -1.7607 0.0004 39 1 0.7758 -2.1447 -2.0569 40 1 2.4917 -2.5992 -1.9257 41 1 1.4627 -2.5795 -0.4735 42 1 2.0909 -1.6842 -4.7684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485323282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:18 Heat of formation + Delta-G solvation = -63.174073 kcal Electronic energy + Delta-G solvation = -23311.901451 eV Core-core repulsion = 19906.068897 eV Total energy + Delta-G solvation = -3405.832554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63438 -39.27270 -36.95970 -36.14002 -33.93445 -33.08362 -32.15819 -30.19441 -29.30351 -26.11616 -25.87381 -24.78415 -23.32437 -22.84823 -20.43534 -19.57497 -18.97894 -17.65735 -17.02122 -16.55342 -16.24024 -15.63588 -15.44870 -15.21913 -14.85684 -14.20752 -14.17439 -13.85342 -13.70801 -13.33315 -12.86128 -12.80922 -12.39736 -12.10897 -11.98969 -11.83909 -11.52054 -11.35660 -11.20829 -11.09907 -10.91548 -10.84144 -10.48692 -10.36395 -9.99604 -9.87377 -9.85426 -9.62885 -9.20369 -8.69820 -8.63571 -6.90086 -5.84989 -3.32965 2.53785 2.75160 3.18627 3.26894 3.34024 3.36598 3.46806 4.35640 4.43598 4.47748 4.56190 4.64959 5.10344 5.16603 5.23379 5.27557 5.32937 5.42143 5.50529 5.58365 5.62360 5.82755 5.85287 6.01074 6.02557 6.11985 6.23276 6.36619 6.64069 6.67885 6.76430 6.78403 6.94604 7.20076 7.29332 7.61764 7.69966 7.87577 8.09558 8.26284 8.47733 9.10677 9.73386 10.23108 11.19236 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.014678 B = 0.005496 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.203408 B = 5093.804683 C = 6584.758890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.068 0.932 4 C 0.106 3.894 5 N -0.702 5.702 6 C 0.517 3.483 7 O -0.550 6.550 8 C -0.124 4.124 9 H 0.105 0.895 10 C -0.102 4.102 11 C -0.135 4.135 12 C 0.518 3.482 13 O -0.564 6.564 14 N -0.715 5.715 15 C 0.117 3.883 16 N -0.594 5.594 17 C 0.166 3.834 18 C -0.264 4.264 19 H 0.069 0.931 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.410 0.590 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.403 0.597 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.027 0.973 40 H 0.043 0.957 41 H -0.002 1.002 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 0.526 10.819 11.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.086 0.914 4 C -0.020 4.020 5 N -0.353 5.353 6 C 0.301 3.699 7 O -0.428 6.428 8 C -0.146 4.146 9 H 0.123 0.877 10 C -0.140 4.140 11 C -0.175 4.175 12 C 0.306 3.694 13 O -0.444 6.444 14 N -0.367 5.367 15 C -0.008 4.008 16 N -0.317 5.317 17 C 0.021 3.979 18 C -0.393 4.393 19 H 0.087 0.913 20 C -0.192 4.192 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.247 0.753 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.239 0.761 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.762 0.030 11.456 12.407 hybrid contribution 0.773 0.450 -1.654 1.880 sum 5.535 0.480 9.803 11.268 Atomic orbital electron populations 1.22187 0.97472 1.01384 1.00594 1.20625 0.92621 0.95504 0.86434 0.91378 1.21974 0.79404 1.01377 0.99261 1.45952 1.08520 1.58000 1.22823 1.20107 0.88662 0.78287 0.82814 1.90678 1.69909 1.48472 1.33789 1.21626 0.94126 1.01878 0.97003 0.87714 1.21482 0.92999 1.02060 0.97505 1.21687 0.96663 1.04466 0.94668 1.20244 0.85942 0.76683 0.86560 1.90755 1.17411 1.49632 1.86561 1.45445 1.10218 1.69949 1.11054 1.21364 0.80770 1.00478 0.98182 1.43989 1.58171 1.08032 1.21498 1.20718 0.99839 0.83327 0.93996 1.19189 1.19209 1.11499 0.89403 0.91345 1.25036 0.98317 0.99237 0.96616 1.70066 1.35880 1.32863 1.15815 0.86312 0.81280 0.78663 0.80564 1.21487 1.21754 1.20511 0.93162 0.93981 0.92215 0.91995 0.92414 0.75330 0.90430 0.89434 0.87828 0.88094 0.76133 0.90683 0.88899 0.95507 0.93875 0.98401 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.19 37.16 0.34 -2.25 16 2 C 0.16 2.77 2.87 -67.93 -0.19 2.57 16 3 H 0.07 1.19 7.86 -51.93 -0.41 0.79 16 4 C 0.11 1.68 4.93 -4.04 -0.02 1.66 16 5 N -0.70 -10.38 5.30 -60.29 -0.32 -10.70 16 6 C 0.52 7.34 7.14 -10.99 -0.08 7.26 16 7 O -0.55 -9.51 15.89 5.56 0.09 -9.43 16 8 C -0.12 -1.35 2.59 -91.64 -0.24 -1.59 16 9 H 0.10 0.98 8.12 -51.93 -0.42 0.56 16 10 C -0.10 -1.04 4.71 -26.52 -0.12 -1.16 16 11 C -0.14 -1.29 6.03 -28.10 -0.17 -1.46 16 12 C 0.52 6.49 7.71 -11.87 -0.09 6.40 16 13 O -0.56 -9.26 17.78 5.55 0.10 -9.16 16 14 N -0.71 -7.95 5.45 -61.38 -0.33 -8.29 16 15 C 0.12 1.26 6.34 -4.48 -0.03 1.24 16 16 N -0.59 -12.75 2.29 -173.48 -0.40 -13.15 16 17 C 0.17 3.70 8.00 59.84 0.48 4.18 16 18 C -0.26 -6.27 9.33 -15.06 -0.14 -6.41 16 19 H 0.07 1.56 7.82 -52.49 -0.41 1.15 16 20 C 0.01 0.18 5.12 -17.43 -0.09 0.09 16 21 N -0.90 -24.40 10.63 55.49 0.59 -23.81 16 22 Si 0.90 20.06 29.57 -169.99 -5.03 15.03 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H 0.05 0.85 7.67 -51.93 -0.40 0.45 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.07 6.86 -51.93 -0.36 0.72 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.41 6.07 7.57 -40.82 -0.31 5.76 16 32 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.09 0.88 7.90 -51.93 -0.41 0.47 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.82 8.14 -51.92 -0.42 0.39 16 36 H 0.40 4.27 8.80 -40.82 -0.36 3.91 16 37 H 0.07 0.86 8.11 -51.92 -0.42 0.44 16 38 H 0.09 1.01 7.88 -51.93 -0.41 0.60 16 39 H 0.03 0.67 7.43 -51.93 -0.39 0.28 16 40 H 0.04 1.04 7.20 -51.93 -0.37 0.67 16 41 H 0.00 -0.05 6.53 -51.93 -0.34 -0.39 16 42 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -30.27 339.12 -7.22 -37.48 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.67 Total: 6.38 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.35 Total: 10.53 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.46 Total: -55.95 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.19 Total: -18.58 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.27 -7.22 -37.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485323282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.691 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds