Wall clock time and date at job start Tue Mar 31 2020 02:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47415 * 2 1 4 4 C 1.52994 * 109.47404 * 120.00660 * 2 1 3 5 5 N 1.46497 * 109.47468 * 175.00023 * 4 2 1 6 6 C 1.34779 * 120.00300 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00310 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.60671 * 299.68504 * 8 6 5 10 10 C 1.53338 * 109.73953 * 179.27140 * 8 6 5 11 11 C 1.53071 * 108.42579 * 172.63828 * 10 8 6 12 12 C 1.50171 * 109.89446 * 48.89701 * 11 10 8 13 13 O 1.21280 * 118.24541 * 162.43914 * 12 11 10 14 14 N 1.33095 * 123.42617 * 342.23861 * 12 11 10 15 15 C 1.45754 * 124.30554 * 2.60334 * 14 12 11 16 16 N 1.46503 * 109.47137 * 240.00419 * 2 1 3 17 17 C 1.46501 * 119.99855 * 299.99885 * 16 2 1 18 18 C 1.36938 * 120.00191 * 119.99869 * 16 2 1 19 19 H 1.08000 * 119.99563 * 22.82306 * 18 16 2 20 20 C 1.38816 * 120.00306 * 202.82367 * 18 16 2 21 21 N 1.31621 * 119.99685 * 11.58614 * 20 18 16 22 22 Si 1.86787 * 120.00178 * 191.58556 * 20 18 16 23 23 H 1.48501 * 109.47381 * 89.99876 * 22 20 18 24 24 H 1.48499 * 109.47362 * 209.99879 * 22 20 18 25 25 H 1.48504 * 109.47433 * 330.00013 * 22 20 18 26 26 H 1.09005 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47227 * 299.99554 * 1 2 3 28 28 H 1.09001 * 109.47444 * 59.99861 * 1 2 3 29 29 H 1.08997 * 109.47835 * 54.99485 * 4 2 1 30 30 H 1.09003 * 109.46890 * 294.99943 * 4 2 1 31 31 H 0.96998 * 120.00227 * 359.97438 * 5 4 2 32 32 H 1.08998 * 109.67691 * 292.36873 * 10 8 6 33 33 H 1.08994 * 109.67555 * 52.90295 * 10 8 6 34 34 H 1.09003 * 109.40487 * 169.03144 * 11 10 8 35 35 H 1.09004 * 109.39899 * 288.77004 * 11 10 8 36 36 H 0.96995 * 117.75065 * 182.38739 * 14 12 11 37 37 H 1.09002 * 109.30258 * 220.39284 * 15 14 12 38 38 H 1.09003 * 109.30189 * 100.80662 * 15 14 12 39 39 H 1.09004 * 109.46839 * 93.85376 * 17 16 2 40 40 H 1.08998 * 109.47243 * 213.84778 * 17 16 2 41 41 H 1.08992 * 109.47441 * 333.85171 * 17 16 2 42 42 H 0.96994 * 119.99822 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8265 1.1904 6 6 4.1731 -1.4285 2.1910 7 8 3.5700 -1.8836 3.1397 8 6 5.6750 -1.5371 2.1303 9 1 5.9652 -2.1052 1.2465 10 6 6.1944 -2.2426 3.3888 11 6 7.6928 -2.5021 3.2143 12 6 8.3792 -1.2467 2.7585 13 8 9.5838 -1.1747 2.8799 14 7 7.7352 -0.2112 2.2251 15 6 6.2883 -0.1377 2.0650 16 7 2.0183 -0.6905 -1.1962 17 6 1.6644 -2.0931 -1.4281 18 6 2.8056 -0.0250 -2.0976 19 1 3.3666 0.8438 -1.7864 20 6 2.8826 -0.4670 -3.4113 21 7 2.0365 -1.3744 -3.8509 22 14 4.1868 0.2259 -4.5549 23 1 5.4152 -0.6038 -4.4653 24 1 3.6800 0.2106 -5.9507 25 1 4.5022 1.6217 -4.1581 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7199 1.2951 30 1 1.7517 -0.1585 2.1369 31 1 3.9824 -0.4628 0.4315 32 1 6.0310 -1.6075 4.2595 33 1 5.6710 -3.1894 3.5212 34 1 8.1181 -2.8224 4.1655 35 1 7.8404 -3.2858 2.4711 36 1 8.2645 0.5447 1.9265 37 1 6.0550 0.3132 1.1005 38 1 5.8685 0.4771 2.8612 39 1 0.7756 -2.1443 -2.0571 40 1 2.4915 -2.5990 -1.9262 41 1 1.4627 -2.5795 -0.4739 42 1 2.0906 -1.6835 -4.7687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485323283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:21 Heat of formation + Delta-G solvation = -62.759286 kcal Electronic energy + Delta-G solvation = -23189.662848 eV Core-core repulsion = 19783.848281 eV Total energy + Delta-G solvation = -3405.814567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.68788 -39.29734 -36.96624 -36.18110 -33.93495 -33.13055 -32.15565 -30.22557 -29.30676 -26.10700 -25.88800 -24.84423 -23.33395 -22.86766 -20.45865 -19.57511 -19.00626 -17.71389 -17.01403 -16.60236 -16.25555 -15.63288 -15.45897 -15.34029 -14.82660 -14.27473 -14.16159 -13.85641 -13.72966 -13.40523 -12.86105 -12.80662 -12.37863 -12.15226 -12.00280 -11.82489 -11.51015 -11.41805 -11.20444 -11.09860 -10.90511 -10.83524 -10.47764 -10.36017 -9.99082 -9.89703 -9.86520 -9.63344 -9.29424 -8.68971 -8.63220 -6.89257 -5.83974 -3.32001 2.49997 2.75719 3.11143 3.28214 3.34323 3.37300 3.46188 4.36427 4.38375 4.45172 4.52741 4.63699 5.06286 5.15139 5.21644 5.28285 5.30269 5.34145 5.49253 5.52174 5.61354 5.83829 5.84010 5.99398 6.02496 6.12055 6.23643 6.36723 6.56890 6.68175 6.77186 6.78550 6.94796 7.12620 7.30923 7.62155 7.70925 7.87540 8.04466 8.27270 8.47681 9.11464 9.74317 10.23913 11.20334 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.005109 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.351946 B = 5478.837707 C = 6774.461435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.068 0.932 4 C 0.105 3.895 5 N -0.702 5.702 6 C 0.518 3.482 7 O -0.550 6.550 8 C -0.127 4.127 9 H 0.109 0.891 10 C -0.102 4.102 11 C -0.137 4.137 12 C 0.520 3.480 13 O -0.563 6.563 14 N -0.715 5.715 15 C 0.119 3.881 16 N -0.594 5.594 17 C 0.166 3.834 18 C -0.264 4.264 19 H 0.069 0.931 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.410 0.590 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.401 0.599 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.027 0.973 40 H 0.042 0.958 41 H -0.002 1.002 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 1.154 11.198 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.086 0.914 4 C -0.020 4.020 5 N -0.353 5.353 6 C 0.302 3.698 7 O -0.429 6.429 8 C -0.148 4.148 9 H 0.127 0.873 10 C -0.140 4.140 11 C -0.176 4.176 12 C 0.307 3.693 13 O -0.442 6.442 14 N -0.367 5.367 15 C -0.006 4.006 16 N -0.317 5.317 17 C 0.021 3.979 18 C -0.393 4.393 19 H 0.086 0.914 20 C -0.192 4.192 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.247 0.753 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.237 0.763 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.849 0.593 11.803 12.774 hybrid contribution 0.817 0.769 -1.480 1.857 sum 5.666 1.362 10.323 11.855 Atomic orbital electron populations 1.22185 0.97471 1.01397 1.00592 1.20620 0.92633 0.95478 0.86426 0.91371 1.21975 0.79412 1.01397 0.99258 1.45950 1.08525 1.57937 1.22881 1.20092 0.88662 0.78323 0.82739 1.90678 1.69996 1.48345 1.33833 1.21649 0.93396 0.97786 1.02019 0.87327 1.21470 0.93422 1.02520 0.96562 1.21702 0.95912 0.95659 1.04361 1.20178 0.87437 0.85160 0.76484 1.90758 1.15026 1.82017 1.56441 1.45362 1.08125 1.20460 1.62773 1.21352 0.79751 0.96234 1.03248 1.43990 1.58170 1.08044 1.21514 1.20719 0.99830 0.83331 0.94005 1.19179 1.19236 1.11490 0.89398 0.91357 1.25040 0.98321 0.99229 0.96649 1.70066 1.35900 1.32868 1.15809 0.86303 0.81300 0.78618 0.80534 1.21493 1.21740 1.20502 0.93159 0.93969 0.92214 0.92021 0.92387 0.75339 0.90529 0.89324 0.87806 0.87942 0.76303 0.89308 0.90870 0.95479 0.93900 0.98400 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.19 37.16 0.34 -2.26 16 2 C 0.16 2.78 2.87 -67.93 -0.19 2.58 16 3 H 0.07 1.19 7.86 -51.93 -0.41 0.78 16 4 C 0.11 1.68 4.93 -4.05 -0.02 1.66 16 5 N -0.70 -10.40 5.29 -60.30 -0.32 -10.72 16 6 C 0.52 7.35 7.14 -10.99 -0.08 7.27 16 7 O -0.55 -9.52 15.90 5.55 0.09 -9.43 16 8 C -0.13 -1.37 2.59 -91.63 -0.24 -1.61 16 9 H 0.11 1.15 8.12 -51.93 -0.42 0.73 16 10 C -0.10 -1.03 4.73 -26.52 -0.13 -1.15 16 11 C -0.14 -1.31 6.03 -28.10 -0.17 -1.48 16 12 C 0.52 6.27 7.71 -11.99 -0.09 6.18 16 13 O -0.56 -8.99 17.78 5.56 0.10 -8.89 16 14 N -0.72 -7.16 5.43 -61.45 -0.33 -7.49 16 15 C 0.12 1.10 6.32 -4.48 -0.03 1.07 16 16 N -0.59 -12.94 2.29 -173.49 -0.40 -13.33 16 17 C 0.17 3.77 8.00 59.85 0.48 4.25 16 18 C -0.26 -6.34 9.33 -15.06 -0.14 -6.48 16 19 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 20 C 0.01 0.18 5.12 -17.43 -0.09 0.09 16 21 N -0.90 -24.68 10.63 55.49 0.59 -24.09 16 22 Si 0.90 20.25 29.57 -169.99 -5.03 15.22 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 26 H 0.05 0.85 7.67 -51.93 -0.40 0.45 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.08 6.87 -51.93 -0.36 0.72 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.41 6.08 7.51 -40.82 -0.31 5.78 16 32 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.09 0.94 7.89 -51.93 -0.41 0.53 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.40 3.63 8.79 -40.82 -0.36 3.27 16 37 H 0.09 0.75 7.83 -51.93 -0.41 0.34 16 38 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.03 0.68 7.43 -51.93 -0.39 0.29 16 40 H 0.04 1.06 7.20 -51.93 -0.37 0.69 16 41 H 0.00 -0.05 6.53 -51.93 -0.34 -0.39 16 42 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -30.81 338.96 -7.21 -38.03 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.67 Total: 5.47 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -0.36 Total: 10.12 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.46 Total: -55.63 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.19 Total: -18.32 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.81 -7.21 -38.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485323283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.732 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds