Wall clock time and date at job start Tue Mar 31 2020 02:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47415 * 2 1 4 4 C 1.52994 * 109.47404 * 120.00660 * 2 1 3 5 5 N 1.46497 * 109.47468 * 175.00023 * 4 2 1 6 6 C 1.34779 * 120.00300 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00310 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.60671 * 299.68504 * 8 6 5 10 10 C 1.53338 * 109.73953 * 179.27140 * 8 6 5 11 11 C 1.53071 * 108.42579 * 172.63828 * 10 8 6 12 12 C 1.50171 * 109.89446 * 48.89701 * 11 10 8 13 13 O 1.21280 * 118.24541 * 162.43914 * 12 11 10 14 14 N 1.33095 * 123.42617 * 342.23861 * 12 11 10 15 15 C 1.45754 * 124.30554 * 2.60334 * 14 12 11 16 16 N 1.46503 * 109.47137 * 240.00419 * 2 1 3 17 17 C 1.46501 * 119.99855 * 299.99885 * 16 2 1 18 18 C 1.36938 * 120.00191 * 119.99869 * 16 2 1 19 19 H 1.08000 * 119.99563 * 22.82306 * 18 16 2 20 20 C 1.38816 * 120.00306 * 202.82367 * 18 16 2 21 21 N 1.31621 * 119.99685 * 11.58614 * 20 18 16 22 22 Si 1.86787 * 120.00178 * 191.58556 * 20 18 16 23 23 H 1.48501 * 109.47381 * 89.99876 * 22 20 18 24 24 H 1.48499 * 109.47362 * 209.99879 * 22 20 18 25 25 H 1.48504 * 109.47433 * 330.00013 * 22 20 18 26 26 H 1.09005 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47227 * 299.99554 * 1 2 3 28 28 H 1.09001 * 109.47444 * 59.99861 * 1 2 3 29 29 H 1.08997 * 109.47835 * 54.99485 * 4 2 1 30 30 H 1.09003 * 109.46890 * 294.99943 * 4 2 1 31 31 H 0.96998 * 120.00227 * 359.97438 * 5 4 2 32 32 H 1.08998 * 109.67691 * 292.36873 * 10 8 6 33 33 H 1.08994 * 109.67555 * 52.90295 * 10 8 6 34 34 H 1.09003 * 109.40487 * 169.03144 * 11 10 8 35 35 H 1.09004 * 109.39899 * 288.77004 * 11 10 8 36 36 H 0.96995 * 117.75065 * 182.38739 * 14 12 11 37 37 H 1.09002 * 109.30258 * 220.39284 * 15 14 12 38 38 H 1.09003 * 109.30189 * 100.80662 * 15 14 12 39 39 H 1.09004 * 109.46839 * 93.85376 * 17 16 2 40 40 H 1.08998 * 109.47243 * 213.84778 * 17 16 2 41 41 H 1.08992 * 109.47441 * 333.85171 * 17 16 2 42 42 H 0.96994 * 119.99822 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8265 1.1904 6 6 4.1731 -1.4285 2.1910 7 8 3.5700 -1.8836 3.1397 8 6 5.6750 -1.5371 2.1303 9 1 5.9652 -2.1052 1.2465 10 6 6.1944 -2.2426 3.3888 11 6 7.6928 -2.5021 3.2143 12 6 8.3792 -1.2467 2.7585 13 8 9.5838 -1.1747 2.8799 14 7 7.7352 -0.2112 2.2251 15 6 6.2883 -0.1377 2.0650 16 7 2.0183 -0.6905 -1.1962 17 6 1.6644 -2.0931 -1.4281 18 6 2.8056 -0.0250 -2.0976 19 1 3.3666 0.8438 -1.7864 20 6 2.8826 -0.4670 -3.4113 21 7 2.0365 -1.3744 -3.8509 22 14 4.1868 0.2259 -4.5549 23 1 5.4152 -0.6038 -4.4653 24 1 3.6800 0.2106 -5.9507 25 1 4.5022 1.6217 -4.1581 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7199 1.2951 30 1 1.7517 -0.1585 2.1369 31 1 3.9824 -0.4628 0.4315 32 1 6.0310 -1.6075 4.2595 33 1 5.6710 -3.1894 3.5212 34 1 8.1181 -2.8224 4.1655 35 1 7.8404 -3.2858 2.4711 36 1 8.2645 0.5447 1.9265 37 1 6.0550 0.3132 1.1005 38 1 5.8685 0.4771 2.8612 39 1 0.7756 -2.1443 -2.0571 40 1 2.4915 -2.5990 -1.9262 41 1 1.4627 -2.5795 -0.4739 42 1 2.0906 -1.6835 -4.7687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485323283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:20 Heat of formation + Delta-G solvation = -84.709064 kcal Electronic energy + Delta-G solvation = -23190.614662 eV Core-core repulsion = 19783.848281 eV Total energy + Delta-G solvation = -3406.766381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65308 -40.43215 -38.45174 -37.23495 -35.40502 -33.98387 -33.72572 -31.41718 -30.76678 -27.98748 -27.11724 -25.67894 -24.93620 -23.97821 -21.52402 -20.99625 -20.01811 -18.88772 -18.62020 -17.62492 -17.29938 -17.03576 -16.73454 -16.41185 -16.06942 -15.72849 -15.09944 -15.03159 -14.84800 -14.51980 -14.44784 -14.31946 -13.78916 -13.48383 -13.04934 -12.94482 -12.84564 -12.74816 -12.65280 -12.52979 -12.26190 -12.19348 -12.06001 -11.97699 -11.75529 -11.46441 -10.86466 -10.81754 -10.58378 -10.16441 -9.89586 -8.74519 -7.76285 -5.24203 1.51313 1.53469 1.57300 1.60211 1.65859 2.20974 2.39814 2.55106 3.39880 3.54669 3.55220 3.68015 3.70191 3.76850 4.10304 4.25792 4.29252 4.40275 4.42888 4.56188 4.64972 4.72140 4.77971 4.80905 4.86612 4.98907 5.03778 5.08669 5.18921 5.27876 5.40717 5.46568 5.63352 5.72662 5.77200 5.79211 6.26215 6.38488 6.69627 7.15779 7.20725 7.32061 7.92665 8.38427 9.27445 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.005109 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.351946 B = 5478.837707 C = 6774.461435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 H 0.078 0.922 4 C 0.116 3.884 5 N -0.703 5.703 6 C 0.521 3.479 7 O -0.580 6.580 8 C -0.122 4.122 9 H 0.115 0.885 10 C -0.095 4.095 11 C -0.129 4.129 12 C 0.516 3.484 13 O -0.608 6.608 14 N -0.706 5.706 15 C 0.123 3.877 16 N -0.602 5.602 17 C 0.186 3.814 18 C -0.251 4.251 19 H 0.086 0.914 20 C -0.052 4.052 21 N -0.941 5.941 22 Si 0.961 3.039 23 H -0.289 1.289 24 H -0.308 1.308 25 H -0.264 1.264 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.411 0.589 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.407 0.593 37 H 0.103 0.897 38 H 0.083 0.917 39 H -0.004 1.004 40 H 0.015 0.985 41 H 0.019 0.981 42 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.444 2.319 12.436 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.096 0.904 4 C -0.010 4.010 5 N -0.353 5.353 6 C 0.307 3.693 7 O -0.461 6.461 8 C -0.143 4.143 9 H 0.133 0.867 10 C -0.133 4.133 11 C -0.168 4.168 12 C 0.305 3.695 13 O -0.490 6.490 14 N -0.357 5.357 15 C -0.002 4.002 16 N -0.326 5.326 17 C 0.041 3.959 18 C -0.381 4.381 19 H 0.103 0.897 20 C -0.247 4.247 21 N -0.588 5.588 22 Si 0.790 3.210 23 H -0.216 1.216 24 H -0.235 1.235 25 H -0.188 1.188 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.248 0.752 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.243 0.757 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.014 0.986 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.440 1.807 13.068 14.270 hybrid contribution 0.560 0.442 -1.781 1.919 sum 6.000 2.249 11.287 12.979 Atomic orbital electron populations 1.22087 0.96514 1.01111 1.01283 1.20799 0.93334 0.95717 0.85238 0.90396 1.21757 0.80122 1.00389 0.98724 1.45952 1.08081 1.58135 1.23145 1.20529 0.89820 0.77148 0.81789 1.90671 1.70961 1.49494 1.34942 1.21621 0.90954 0.99053 1.02689 0.86711 1.21407 0.93562 1.02225 0.96106 1.21683 0.95110 0.94798 1.05252 1.20579 0.86965 0.85987 0.76016 1.90743 1.16901 1.82910 1.58483 1.45326 1.08491 1.20182 1.61659 1.21402 0.78983 0.95325 1.04459 1.44143 1.58278 1.07841 1.22300 1.20348 0.97302 0.84232 0.94016 1.19614 1.18313 1.10870 0.89324 0.89680 1.25723 1.00309 1.00254 0.98384 1.70241 1.38026 1.35029 1.15474 0.85361 0.78968 0.78695 0.77935 1.21634 1.23548 1.18818 0.93979 0.90501 0.94231 0.93626 0.90597 0.75177 0.90651 0.89691 0.86744 0.86770 0.75662 0.87914 0.89872 0.98555 0.96618 0.96302 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 9.19 71.98 0.66 -4.04 16 2 C 0.16 5.17 2.87 44.99 0.13 5.30 16 3 H 0.08 2.46 7.86 -2.39 -0.02 2.44 16 4 C 0.12 3.41 4.93 86.38 0.43 3.84 16 5 N -0.70 -19.07 5.29 -463.07 -2.45 -21.52 16 6 C 0.52 13.61 7.14 87.66 0.63 14.24 16 7 O -0.58 -18.98 15.90 -3.04 -0.05 -19.03 16 8 C -0.12 -2.33 2.59 -11.45 -0.03 -2.36 16 9 H 0.11 2.13 8.12 -2.39 -0.02 2.11 16 10 C -0.09 -1.71 4.73 30.73 0.15 -1.57 16 11 C -0.13 -2.20 6.03 29.71 0.18 -2.02 16 12 C 0.52 11.58 7.71 87.75 0.68 12.25 16 13 O -0.61 -18.86 17.78 -3.03 -0.05 -18.92 16 14 N -0.71 -12.53 5.43 -467.65 -2.54 -15.07 16 15 C 0.12 1.91 6.32 86.50 0.55 2.46 16 16 N -0.60 -25.56 2.29 -702.79 -1.61 -27.17 16 17 C 0.19 8.51 8.00 127.77 1.02 9.53 16 18 C -0.25 -11.71 9.33 84.03 0.78 -10.93 16 19 H 0.09 3.64 7.81 -2.91 -0.02 3.62 16 20 C -0.05 -2.63 5.12 84.86 0.43 -2.19 16 21 N -0.94 -52.51 10.63 21.65 0.23 -52.28 16 22 Si 0.96 41.39 29.57 68.60 2.03 43.41 16 23 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.31 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 H 0.04 1.37 7.67 -2.38 -0.02 1.35 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.51 6.87 -2.39 -0.02 1.49 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.41 11.08 7.51 -92.71 -0.70 10.38 16 32 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 33 H 0.08 1.64 7.89 -2.39 -0.02 1.62 16 34 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.41 6.50 8.79 -92.71 -0.82 5.69 16 37 H 0.10 1.38 7.83 -2.39 -0.02 1.36 16 38 H 0.08 1.20 8.11 -2.39 -0.02 1.18 16 39 H 0.00 -0.20 7.43 -2.38 -0.02 -0.22 16 40 H 0.01 0.77 7.20 -2.39 -0.02 0.75 16 41 H 0.02 0.76 6.53 -2.39 -0.02 0.74 16 42 H 0.24 13.51 8.31 -92.71 -0.77 12.74 16 Total: -1.00 -66.31 338.96 0.68 -65.63 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.48 Total: 20.44 kcal Atomic # 6 Polarization: 18.90 SS G_CDS: 5.60 Total: 24.50 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -6.37 Total: -116.04 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.10 Total: -37.95 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -66.31 0.68 -65.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485323283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.081 kcal (2) G-P(sol) polarization free energy of solvation -66.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds