Wall clock time and date at job start Tue Mar 31 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46667 * 2 1 4 4 C 1.34784 * 119.99715 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00147 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99932 * 180.02562 * 4 3 2 7 7 C 1.50696 * 109.47327 * 179.97438 * 6 4 3 8 8 O 1.21286 * 119.99985 * 359.97438 * 7 6 4 9 9 N 1.34770 * 120.00376 * 179.97438 * 7 6 4 10 10 C 1.47428 * 125.64761 * 0.02562 * 9 7 6 11 11 C 1.54906 * 104.83154 * 204.08912 * 10 9 7 12 12 C 1.55152 * 101.58637 * 322.99196 * 11 10 9 13 13 H 1.08993 * 110.72469 * 153.86642 * 12 11 10 14 14 N 1.46499 * 110.71968 * 276.96341 * 12 11 10 15 15 C 1.36941 * 120.00021 * 210.83263 * 14 12 11 16 16 H 1.07993 * 119.99633 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99909 * 179.97438 * 15 14 12 18 18 N 1.31626 * 120.00133 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46939 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47034 * 120.00244 * 19 17 15 22 22 H 1.48502 * 109.47078 * 240.00062 * 19 17 15 23 23 C 1.47023 * 125.65001 * 179.71488 * 9 7 6 24 24 H 1.08999 * 109.88194 * 59.56180 * 23 9 7 25 25 C 1.52998 * 109.88319 * 298.39440 * 23 9 7 26 26 H 1.09000 * 109.47158 * 299.99501 * 1 2 3 27 27 H 1.09008 * 109.47181 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47344 * 60.00283 * 1 2 3 29 29 H 1.08994 * 109.47238 * 120.00179 * 2 1 3 30 30 H 1.09000 * 109.47158 * 240.00499 * 2 1 3 31 31 H 0.96999 * 120.00377 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47047 * 300.00082 * 6 4 3 33 33 H 1.09001 * 109.47322 * 59.99293 * 6 4 3 34 34 H 1.08994 * 110.36556 * 322.92894 * 10 9 7 35 35 H 1.09000 * 110.36806 * 85.25298 * 10 9 7 36 36 H 1.09000 * 111.00119 * 81.06698 * 11 10 9 37 37 H 1.08997 * 111.00570 * 204.87531 * 11 10 9 38 38 H 0.97005 * 120.00152 * 30.82688 * 14 12 11 39 39 H 0.97000 * 119.99808 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.46904 * 65.44846 * 25 23 9 41 41 H 1.08995 * 109.47468 * 185.44985 * 25 23 9 42 42 H 1.09006 * 109.47508 * 305.44968 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8456 3.0484 0.0001 7 6 5.3526 3.0485 -0.0001 8 8 5.9591 1.9982 -0.0001 9 7 6.0264 4.2157 -0.0001 10 6 5.4185 5.5588 0.0004 11 6 6.5001 6.4839 -0.6111 12 6 7.8004 5.8719 -0.0264 13 1 8.6505 6.0794 -0.6761 14 7 8.0486 6.3774 1.3260 15 6 9.3330 6.5126 1.7815 16 1 10.1628 6.2461 1.1438 17 6 9.5682 6.9921 3.0627 18 7 8.5568 7.3163 3.8401 19 14 11.3202 7.1758 3.6842 20 1 12.2686 6.7461 2.6254 21 1 11.5762 8.5971 4.0303 22 1 11.5086 6.3308 4.8908 23 6 7.4895 4.3605 0.0057 24 1 7.9132 3.8780 -0.8751 25 6 8.0693 3.7340 1.2754 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.3879 2.1185 -0.0004 32 1 3.4818 3.5628 -0.8894 33 1 3.4826 3.5618 0.8905 34 1 4.5190 5.5683 -0.6151 35 1 5.1855 5.8693 1.0190 36 1 6.4952 6.4242 -1.6994 37 1 6.3678 7.5132 -0.2777 38 1 7.3032 6.6165 1.8989 39 1 8.7212 7.6518 4.7353 40 1 7.8965 2.6578 1.2611 41 1 9.1407 3.9294 1.3204 42 1 7.5838 4.1684 2.1494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486076271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:54 Heat of formation + Delta-G solvation = -53.858573 kcal Electronic energy + Delta-G solvation = -22858.832705 eV Core-core repulsion = 19453.404101 eV Total energy + Delta-G solvation = -3405.428604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25934 -39.14283 -37.15636 -35.26740 -33.95309 -32.02086 -31.20169 -30.67250 -29.67228 -28.25516 -25.18736 -23.58902 -23.28175 -22.32359 -20.92796 -19.71600 -18.35507 -17.53789 -17.18121 -16.38513 -16.14078 -15.76162 -15.53116 -14.93818 -14.40165 -14.19660 -13.64849 -13.51875 -13.47283 -13.34868 -12.82809 -12.74363 -12.51381 -12.34794 -12.12607 -12.04927 -11.65151 -11.38919 -11.30020 -10.88404 -10.82531 -10.57921 -10.47517 -10.13106 -10.03729 -9.93047 -9.66259 -9.18436 -9.09242 -8.94189 -8.12900 -7.03158 -5.81996 -3.10844 2.65417 2.85254 3.06074 3.41502 3.48306 3.49688 3.55705 4.51416 4.55549 4.66834 4.78797 4.86279 4.99602 5.03144 5.12265 5.20314 5.33891 5.43457 5.51756 5.58984 5.62347 5.72333 5.74639 5.79788 5.89838 6.13850 6.27904 6.29997 6.32102 6.49968 6.61908 6.69717 6.90808 7.11547 7.36281 7.39229 7.67387 7.99658 8.23205 8.35663 8.65203 9.47990 10.01947 10.37136 11.40246 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030773 B = 0.003427 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.658550 B = 8167.387710 C = 8328.626078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.740 5.740 4 C 0.511 3.489 5 O -0.491 6.491 6 C -0.162 4.162 7 C 0.524 3.476 8 O -0.502 6.502 9 N -0.609 5.609 10 C 0.101 3.899 11 C -0.146 4.146 12 C 0.170 3.830 13 H 0.075 0.925 14 N -0.709 5.709 15 C -0.238 4.238 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.111 3.889 24 H 0.058 0.942 25 C -0.133 4.133 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.398 0.602 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.263 -5.893 -9.845 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.396 5.396 4 C 0.295 3.705 5 O -0.362 6.362 6 C -0.205 4.205 7 C 0.309 3.691 8 O -0.376 6.376 9 N -0.345 5.345 10 C -0.022 4.022 11 C -0.185 4.185 12 C 0.058 3.942 13 H 0.093 0.907 14 N -0.348 5.348 15 C -0.369 4.369 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.736 3.264 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.006 3.994 24 H 0.076 0.924 25 C -0.191 4.191 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.231 0.769 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.152 -7.236 -9.794 20.228 hybrid contribution 0.167 0.701 0.704 1.008 sum -15.985 -6.535 -9.090 19.516 Atomic orbital electron populations 1.22001 0.94548 1.03145 1.02449 1.21245 0.93984 0.83189 1.02418 1.46061 1.07001 1.08725 1.77811 1.20118 0.82139 0.91055 0.77178 1.90867 1.54364 1.45517 1.45445 1.21587 0.96180 0.96492 1.06192 1.19451 0.88278 0.83135 0.78229 1.90826 1.69174 1.29862 1.47744 1.48634 1.08073 1.04862 1.72921 1.22286 0.96297 0.82724 1.00861 1.23150 0.96171 0.99461 0.99714 1.21256 0.94880 0.89151 0.88958 0.90737 1.42331 1.05990 1.75926 1.10529 1.19249 0.84360 1.36127 0.97128 0.90999 1.24719 0.97158 1.01909 0.96853 1.69662 1.29002 1.50213 1.08990 0.86153 0.84341 0.77242 0.78665 1.20508 1.21930 1.21888 1.22680 0.78311 1.00101 0.98335 0.92364 1.21754 1.01664 0.98334 0.97324 0.91965 0.90893 0.92027 0.91593 0.91653 0.76852 0.86584 0.86373 0.91723 0.91260 0.91130 0.89571 0.78116 0.93546 0.94144 0.91556 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 10.03 37.16 0.37 -0.47 16 2 C 0.12 0.99 6.39 -4.04 -0.03 0.97 16 3 N -0.74 -6.75 5.56 -60.30 -0.33 -7.08 16 4 C 0.51 6.93 7.82 -10.98 -0.09 6.85 16 5 O -0.49 -9.45 14.18 -18.96 -0.27 -9.72 16 6 C -0.16 -1.86 5.19 -29.04 -0.15 -2.01 16 7 C 0.52 9.00 7.63 -10.99 -0.08 8.92 16 8 O -0.50 -11.09 13.29 -18.96 -0.25 -11.34 16 9 N -0.61 -10.02 3.06 -163.01 -0.50 -10.52 16 10 C 0.10 1.35 6.62 -2.53 -0.02 1.33 16 11 C -0.15 -2.07 6.70 -24.59 -0.16 -2.24 16 12 C 0.17 3.14 3.53 -66.09 -0.23 2.90 16 13 H 0.07 1.37 8.05 -51.93 -0.42 0.96 16 14 N -0.71 -16.27 3.81 -51.65 -0.20 -16.47 16 15 C -0.24 -6.19 8.62 -15.06 -0.13 -6.32 16 16 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -26.99 13.06 55.49 0.72 -26.27 16 19 Si 0.90 21.95 29.55 -169.99 -5.02 16.92 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 C 0.11 2.09 3.43 -66.95 -0.23 1.86 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.40 2.23 8.47 -40.82 -0.35 1.88 16 32 H 0.12 0.93 7.85 -51.93 -0.41 0.52 16 33 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.62 7.48 -51.93 -0.39 0.24 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.38 9.44 7.86 -40.82 -0.32 9.12 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.04 0.89 7.02 -51.93 -0.36 0.53 16 41 H 0.07 1.48 7.32 -51.93 -0.38 1.10 16 42 H 0.06 1.53 7.55 -51.93 -0.39 1.14 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -35.19 342.52 -8.02 -43.21 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.79 Total: 7.24 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -0.54 Total: 8.85 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.31 Total: -60.33 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.52 Total: -21.06 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.19 -8.02 -43.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486076271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.645 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds