Wall clock time and date at job start Tue Mar 31 2020 02:48:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46505 * 109.46759 * 2 1
4 4 C 1.34769 * 119.99899 * 180.02562 * 3 2 1
5 5 O 1.21288 * 120.00311 * 0.02562 * 4 3 2
6 6 C 1.50703 * 120.00116 * 179.97438 * 4 3 2
7 7 C 1.50693 * 109.47135 * 180.02562 * 6 4 3
8 8 O 1.21276 * 120.00285 * 0.02562 * 7 6 4
9 9 N 1.34782 * 119.99974 * 180.02562 * 7 6 4
10 10 C 1.47423 * 125.64708 * 359.96859 * 9 7 6
11 11 C 1.54909 * 104.83351 * 155.90981 * 10 9 7
12 12 C 1.55158 * 101.61642 * 36.99324 * 11 10 9
13 13 H 1.08999 * 110.72042 * 82.87870 * 12 11 10
14 14 N 1.46497 * 110.72259 * 206.15767 * 12 11 10
15 15 C 1.36932 * 119.99587 * 273.54435 * 14 12 11
16 16 H 1.08005 * 120.00433 * 359.97438 * 15 14 12
17 17 C 1.38815 * 120.00209 * 180.02562 * 15 14 12
18 18 N 1.31612 * 120.00294 * 179.97438 * 17 15 14
19 19 Si 1.86801 * 119.99814 * 359.97438 * 17 15 14
20 20 H 1.48502 * 109.47222 * 90.00049 * 19 17 15
21 21 H 1.48494 * 109.47410 * 210.00185 * 19 17 15
22 22 H 1.48507 * 109.46936 * 330.00206 * 19 17 15
23 23 C 1.47016 * 125.64850 * 180.02562 * 9 7 6
24 24 H 1.09000 * 109.88531 * 300.42930 * 23 9 7
25 25 C 1.52997 * 109.88556 * 61.44836 * 23 9 7
26 26 H 1.09004 * 109.47318 * 60.00361 * 1 2 3
27 27 H 1.09008 * 109.46559 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47510 * 299.99510 * 1 2 3
29 29 H 1.08997 * 109.47007 * 240.00432 * 2 1 3
30 30 H 1.08996 * 109.46953 * 120.00117 * 2 1 3
31 31 H 0.96997 * 119.99890 * 359.97438 * 3 2 1
32 32 H 1.09002 * 109.47031 * 59.99599 * 6 4 3
33 33 H 1.09004 * 109.46805 * 299.99912 * 6 4 3
34 34 H 1.09000 * 110.36544 * 37.07402 * 10 9 7
35 35 H 1.09002 * 110.46474 * 274.79752 * 10 9 7
36 36 H 1.09002 * 111.00594 * 155.08642 * 11 10 9
37 37 H 1.09002 * 111.00655 * 278.89906 * 11 10 9
38 38 H 0.97001 * 120.00114 * 93.54210 * 14 12 11
39 39 H 0.97004 * 120.00357 * 179.97438 * 18 17 15
40 40 H 1.09002 * 109.47123 * 58.54653 * 25 23 9
41 41 H 1.09005 * 109.46938 * 178.54640 * 25 23 9
42 42 H 1.09000 * 109.47110 * 298.54251 * 25 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 3.3433 1.6276 -0.0005
5 8 4.1315 0.7058 -0.0015
6 6 3.8456 3.0485 -0.0011
7 6 5.3525 3.0485 -0.0023
8 8 5.9590 1.9983 -0.0030
9 7 6.0264 4.2158 -0.0024
10 6 5.4184 5.5588 -0.0022
11 6 6.5004 6.4839 0.6088
12 6 7.8009 5.8724 0.0236
13 1 7.9837 6.2465 -0.9837
14 7 8.9435 6.1512 0.8971
15 6 9.6399 7.3223 0.7605
16 1 9.3471 8.0402 0.0085
17 6 10.7229 7.5864 1.5877
18 7 11.3925 8.7117 1.4560
19 14 11.2298 6.3445 2.8877
20 1 12.2187 5.3990 2.3102
21 1 11.8392 7.0552 4.0404
22 1 10.0345 5.5918 3.3460
23 6 7.4894 4.3605 -0.0040
24 1 7.9105 3.8799 0.8791
25 6 8.0735 3.7281 -1.2688
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0278 -0.0005
28 1 -0.3634 0.5137 0.8900
29 1 1.8933 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8899
31 1 1.3879 2.1185 -0.0004
32 1 3.4825 3.5626 0.8888
33 1 3.4819 3.5620 -0.8912
34 1 4.5194 5.5682 0.6141
35 1 5.1832 5.8708 -1.0198
36 1 6.3682 7.5131 0.2752
37 1 6.4961 6.4245 1.6971
38 1 9.2066 5.5063 1.5722
39 1 12.1491 8.8964 2.0343
40 1 7.6425 4.2082 -2.1474
41 1 9.1553 3.8619 -1.2756
42 1 7.8390 2.6638 -1.2844
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001486076274.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:56
Heat of formation + Delta-G solvation = -53.234526 kcal
Electronic energy + Delta-G solvation = -22563.850281 eV
Core-core repulsion = 19158.448738 eV
Total energy + Delta-G solvation = -3405.401543 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.45592 -39.30359 -37.30739 -35.39239 -34.24233 -32.25201 -31.40218 -30.97890
-30.03922 -28.83002 -25.35658 -23.69184 -22.72583 -22.52603 -20.98613 -20.18123
-18.85330 -17.62538 -17.46052 -16.52509 -16.39837 -15.97867 -15.71729 -15.04209
-14.64831 -14.22475 -14.00998 -13.63926 -13.56572 -13.39988 -12.85803 -12.74417
-12.65110 -12.46132 -12.21996 -12.19753 -11.97549 -11.79794 -11.69872 -11.31899
-11.17335 -10.90385 -10.63400 -10.36148 -10.12992 -10.02423 -9.64480 -9.30597
-9.28671 -8.97624 -8.42402 -7.34546 -5.82484 -3.19581 2.50510 2.66719
2.82465 3.30862 3.36795 3.40605 3.44991 4.33685 4.52788 4.55364
4.69805 4.71370 4.90005 4.94177 4.98173 5.00439 5.16079 5.20012
5.40613 5.43226 5.50617 5.52942 5.59278 5.64861 5.68661 5.82073
5.89675 6.02401 6.17739 6.20948 6.36851 6.51591 6.55007 6.65466
6.81482 7.23215 7.71057 7.91779 8.08602 8.36067 8.39929 9.12982
9.85750 10.04196 11.35214
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.035944 B = 0.003242 C = 0.003172
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 778.803452 B = 8635.125771 C = 8824.342936
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.115 3.885
3 N -0.739 5.739
4 C 0.511 3.489
5 O -0.491 6.491
6 C -0.161 4.161
7 C 0.525 3.475
8 O -0.499 6.499
9 N -0.614 5.614
10 C 0.097 3.903
11 C -0.155 4.155
12 C 0.181 3.819
13 H 0.073 0.927
14 N -0.740 5.740
15 C -0.247 4.247
16 H 0.092 0.908
17 C 0.008 3.992
18 N -0.931 5.931
19 Si 0.882 3.118
20 H -0.283 1.283
21 H -0.290 1.290
22 H -0.277 1.277
23 C 0.127 3.873
24 H 0.073 0.927
25 C -0.156 4.156
26 H 0.061 0.939
27 H 0.073 0.927
28 H 0.061 0.939
29 H 0.066 0.934
30 H 0.066 0.934
31 H 0.398 0.602
32 H 0.119 0.881
33 H 0.119 0.881
34 H 0.068 0.932
35 H 0.067 0.933
36 H 0.080 0.920
37 H 0.074 0.926
38 H 0.363 0.637
39 H 0.260 0.740
40 H 0.052 0.948
41 H 0.069 0.931
42 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.838 -10.838 -4.060 26.499
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.008 4.008
3 N -0.395 5.395
4 C 0.295 3.705
5 O -0.362 6.362
6 C -0.204 4.204
7 C 0.311 3.689
8 O -0.372 6.372
9 N -0.350 5.350
10 C -0.026 4.026
11 C -0.196 4.196
12 C 0.070 3.930
13 H 0.091 0.909
14 N -0.382 5.382
15 C -0.376 4.376
16 H 0.110 0.890
17 C -0.188 4.188
18 N -0.578 5.578
19 Si 0.712 3.288
20 H -0.209 1.209
21 H -0.217 1.217
22 H -0.203 1.203
23 C 0.023 3.977
24 H 0.091 0.909
25 C -0.214 4.214
26 H 0.080 0.920
27 H 0.092 0.908
28 H 0.080 0.920
29 H 0.084 0.916
30 H 0.084 0.916
31 H 0.232 0.768
32 H 0.137 0.863
33 H 0.137 0.863
34 H 0.087 0.913
35 H 0.085 0.915
36 H 0.099 0.901
37 H 0.093 0.907
38 H 0.196 0.804
39 H 0.071 0.929
40 H 0.072 0.928
41 H 0.088 0.912
42 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -22.814 -11.980 -4.131 26.098
hybrid contribution -0.051 -0.187 1.048 1.066
sum -22.866 -12.167 -3.083 26.084
Atomic orbital electron populations
1.22003 0.94478 1.03220 1.02472 1.21259 0.94051 0.83068 1.02469
1.46048 1.06951 1.08825 1.77655 1.20084 0.82220 0.90965 0.77275
1.90877 1.54369 1.45490 1.45514 1.21569 0.95682 0.96706 1.06401
1.19494 0.88469 0.82888 0.78027 1.90839 1.69172 1.29816 1.47384
1.48569 1.07552 1.05411 1.73484 1.22397 0.97163 0.82435 1.00625
1.23517 0.95858 0.98807 1.01380 1.21221 0.87143 0.89498 0.95105
0.90870 1.42704 1.33691 1.21811 1.39953 1.19011 1.07923 0.94564
1.16144 0.89004 1.24658 0.97891 0.96951 0.99277 1.69691 1.22390
1.24123 1.41566 0.86593 0.78551 0.81364 0.82277 1.20906 1.21672
1.20277 1.21873 0.78997 0.97887 0.98907 0.90934 1.22061 1.01421
1.01351 0.96585 0.91980 0.90834 0.91970 0.91571 0.91573 0.76804
0.86303 0.86295 0.91348 0.91520 0.90119 0.90731 0.80354 0.92950
0.92849 0.91212 0.91803
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.69 10.03 37.16 0.37 -0.31 16
2 C 0.12 0.86 6.39 -4.04 -0.03 0.83 16
3 N -0.74 -5.72 5.56 -60.29 -0.33 -6.05 16
4 C 0.51 6.10 7.82 -10.99 -0.09 6.01 16
5 O -0.49 -8.68 14.18 -18.97 -0.27 -8.95 16
6 C -0.16 -1.55 5.19 -29.04 -0.15 -1.70 16
7 C 0.53 7.93 7.63 -10.99 -0.08 7.84 16
8 O -0.50 -9.95 13.20 -18.96 -0.25 -10.20 16
9 N -0.61 -8.87 3.07 -162.99 -0.50 -9.37 16
10 C 0.10 1.11 6.69 -2.53 -0.02 1.09 16
11 C -0.15 -2.33 6.77 -24.58 -0.17 -2.49 16
12 C 0.18 3.29 3.12 -66.07 -0.21 3.09 16
13 H 0.07 1.35 7.84 -51.93 -0.41 0.94 16
14 N -0.74 -16.86 5.05 -51.62 -0.26 -17.12 16
15 C -0.25 -6.68 10.46 -15.06 -0.16 -6.84 16
16 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16
17 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16
18 N -0.93 -28.60 13.97 55.49 0.78 -27.82 16
19 Si 0.88 21.94 27.74 -169.99 -4.71 17.23 16
20 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16
21 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16
22 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16
23 C 0.13 2.16 3.20 -66.93 -0.21 1.95 16
24 H 0.07 1.38 7.69 -51.93 -0.40 0.98 16
25 C -0.16 -2.57 9.11 37.16 0.34 -2.23 16
26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16
27 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16
28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16
29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
31 H 0.40 1.69 8.47 -40.82 -0.35 1.34 16
32 H 0.12 0.80 7.85 -51.93 -0.41 0.40 16
33 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.07 0.59 7.48 -51.93 -0.39 0.20 16
35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
38 H 0.36 8.36 5.37 -40.82 -0.22 8.15 16
39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16
40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
41 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16
42 H 0.06 1.12 6.87 -51.93 -0.36 0.76 16
LS Contribution 342.92 15.07 5.17 5.17
Total: -1.00 -36.55 342.92 -7.64 -44.20
By element:
Atomic # 1 Polarization: 12.29 SS G_CDS: -6.77 Total: 5.53 kcal
Atomic # 6 Polarization: 7.89 SS G_CDS: -0.49 Total: 7.40 kcal
Atomic # 7 Polarization: -60.04 SS G_CDS: -0.32 Total: -60.36 kcal
Atomic # 8 Polarization: -18.64 SS G_CDS: -0.52 Total: -19.15 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal
Total LS contribution 5.17 Total: 5.17 kcal
Total: -36.55 -7.64 -44.20 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001486076274.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.039 kcal
(2) G-P(sol) polarization free energy of solvation -36.551 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.590 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds