Wall clock time and date at job start Tue Mar 31 2020 02:48:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46505 * 109.46759 * 2 1
4 4 C 1.34769 * 119.99899 * 180.02562 * 3 2 1
5 5 O 1.21288 * 120.00311 * 0.02562 * 4 3 2
6 6 C 1.50703 * 120.00116 * 179.97438 * 4 3 2
7 7 C 1.50693 * 109.47135 * 180.02562 * 6 4 3
8 8 O 1.21276 * 120.00285 * 0.02562 * 7 6 4
9 9 N 1.34782 * 119.99974 * 180.02562 * 7 6 4
10 10 C 1.47423 * 125.64708 * 359.96859 * 9 7 6
11 11 C 1.54909 * 104.83351 * 155.90981 * 10 9 7
12 12 C 1.55158 * 101.61642 * 36.99324 * 11 10 9
13 13 H 1.08999 * 110.72042 * 82.87870 * 12 11 10
14 14 N 1.46497 * 110.72259 * 206.15767 * 12 11 10
15 15 C 1.36932 * 119.99587 * 273.54435 * 14 12 11
16 16 H 1.08005 * 120.00433 * 359.97438 * 15 14 12
17 17 C 1.38815 * 120.00209 * 180.02562 * 15 14 12
18 18 N 1.31612 * 120.00294 * 179.97438 * 17 15 14
19 19 Si 1.86801 * 119.99814 * 359.97438 * 17 15 14
20 20 H 1.48502 * 109.47222 * 90.00049 * 19 17 15
21 21 H 1.48494 * 109.47410 * 210.00185 * 19 17 15
22 22 H 1.48507 * 109.46936 * 330.00206 * 19 17 15
23 23 C 1.47016 * 125.64850 * 180.02562 * 9 7 6
24 24 H 1.09000 * 109.88531 * 300.42930 * 23 9 7
25 25 C 1.52997 * 109.88556 * 61.44836 * 23 9 7
26 26 H 1.09004 * 109.47318 * 60.00361 * 1 2 3
27 27 H 1.09008 * 109.46559 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47510 * 299.99510 * 1 2 3
29 29 H 1.08997 * 109.47007 * 240.00432 * 2 1 3
30 30 H 1.08996 * 109.46953 * 120.00117 * 2 1 3
31 31 H 0.96997 * 119.99890 * 359.97438 * 3 2 1
32 32 H 1.09002 * 109.47031 * 59.99599 * 6 4 3
33 33 H 1.09004 * 109.46805 * 299.99912 * 6 4 3
34 34 H 1.09000 * 110.36544 * 37.07402 * 10 9 7
35 35 H 1.09002 * 110.46474 * 274.79752 * 10 9 7
36 36 H 1.09002 * 111.00594 * 155.08642 * 11 10 9
37 37 H 1.09002 * 111.00655 * 278.89906 * 11 10 9
38 38 H 0.97001 * 120.00114 * 93.54210 * 14 12 11
39 39 H 0.97004 * 120.00357 * 179.97438 * 18 17 15
40 40 H 1.09002 * 109.47123 * 58.54653 * 25 23 9
41 41 H 1.09005 * 109.46938 * 178.54640 * 25 23 9
42 42 H 1.09000 * 109.47110 * 298.54251 * 25 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 3.3433 1.6276 -0.0005
5 8 4.1315 0.7058 -0.0015
6 6 3.8456 3.0485 -0.0011
7 6 5.3525 3.0485 -0.0023
8 8 5.9590 1.9983 -0.0030
9 7 6.0264 4.2158 -0.0024
10 6 5.4184 5.5588 -0.0022
11 6 6.5004 6.4839 0.6088
12 6 7.8009 5.8724 0.0236
13 1 7.9837 6.2465 -0.9837
14 7 8.9435 6.1512 0.8971
15 6 9.6399 7.3223 0.7605
16 1 9.3471 8.0402 0.0085
17 6 10.7229 7.5864 1.5877
18 7 11.3925 8.7117 1.4560
19 14 11.2298 6.3445 2.8877
20 1 12.2187 5.3990 2.3102
21 1 11.8392 7.0552 4.0404
22 1 10.0345 5.5918 3.3460
23 6 7.4894 4.3605 -0.0040
24 1 7.9105 3.8799 0.8791
25 6 8.0735 3.7281 -1.2688
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0278 -0.0005
28 1 -0.3634 0.5137 0.8900
29 1 1.8933 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8899
31 1 1.3879 2.1185 -0.0004
32 1 3.4825 3.5626 0.8888
33 1 3.4819 3.5620 -0.8912
34 1 4.5194 5.5682 0.6141
35 1 5.1832 5.8708 -1.0198
36 1 6.3682 7.5131 0.2752
37 1 6.4961 6.4245 1.6971
38 1 9.2066 5.5063 1.5722
39 1 12.1491 8.8964 2.0343
40 1 7.6425 4.2082 -2.1474
41 1 9.1553 3.8619 -1.2756
42 1 7.8390 2.6638 -1.2844
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001486076274.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:56
Heat of formation + Delta-G solvation = -80.771749 kcal
Electronic energy + Delta-G solvation = -22565.044385 eV
Core-core repulsion = 19158.448738 eV
Total energy + Delta-G solvation = -3406.595646 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.52521 -40.35334 -38.57936 -36.22093 -35.94178 -33.72834 -32.77689 -32.08465
-31.24575 -29.82754 -26.88348 -24.72380 -24.23312 -23.46098 -22.00437 -21.52712
-20.13588 -19.39490 -18.47100 -17.51667 -17.42397 -16.94802 -16.68536 -16.27472
-15.96201 -15.78375 -15.19264 -14.82068 -14.68500 -14.58005 -14.51657 -13.92777
-13.72567 -13.45284 -13.35459 -13.23222 -13.07007 -12.87566 -12.68891 -12.66311
-12.51125 -12.31940 -12.12606 -12.03210 -11.81005 -11.52188 -11.13725 -10.95100
-10.44136 -10.05492 -9.60523 -9.31512 -8.02430 -5.35757 1.37393 1.39484
1.45254 1.64213 1.74582 1.75515 2.43718 2.47067 3.27523 3.40864
3.55347 3.70188 3.87601 4.04621 4.14321 4.20130 4.22589 4.33743
4.37426 4.42992 4.45551 4.50169 4.54153 4.67609 4.80459 4.94710
4.98141 5.04141 5.08088 5.22494 5.26909 5.28816 5.37664 5.48032
5.51842 5.77888 6.21592 6.57291 6.66106 7.05659 7.23184 7.40783
7.81513 7.98840 9.18428
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.035944 B = 0.003242 C = 0.003172
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 778.803452 B = 8635.125771 C = 8824.342936
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.110 3.890
3 N -0.717 5.717
4 C 0.503 3.497
5 O -0.561 6.561
6 C -0.146 4.146
7 C 0.516 3.484
8 O -0.557 6.557
9 N -0.612 5.612
10 C 0.104 3.896
11 C -0.149 4.149
12 C 0.172 3.828
13 H 0.071 0.929
14 N -0.747 5.747
15 C -0.221 4.221
16 H 0.069 0.931
17 C -0.058 4.058
18 N -0.979 5.979
19 Si 0.944 3.056
20 H -0.284 1.284
21 H -0.295 1.295
22 H -0.259 1.259
23 C 0.131 3.869
24 H 0.046 0.954
25 C -0.147 4.147
26 H 0.074 0.926
27 H 0.079 0.921
28 H 0.073 0.927
29 H 0.050 0.950
30 H 0.048 0.952
31 H 0.420 0.580
32 H 0.160 0.840
33 H 0.164 0.836
34 H 0.113 0.887
35 H 0.096 0.904
36 H 0.086 0.914
37 H 0.062 0.938
38 H 0.362 0.638
39 H 0.257 0.743
40 H 0.069 0.931
41 H 0.058 0.942
42 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.663 -10.689 -4.129 29.942
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.014 4.014
3 N -0.373 5.373
4 C 0.289 3.711
5 O -0.437 6.437
6 C -0.188 4.188
7 C 0.305 3.695
8 O -0.434 6.434
9 N -0.348 5.348
10 C -0.017 4.017
11 C -0.190 4.190
12 C 0.063 3.937
13 H 0.089 0.911
14 N -0.389 5.389
15 C -0.352 4.352
16 H 0.087 0.913
17 C -0.250 4.250
18 N -0.630 5.630
19 Si 0.772 3.228
20 H -0.211 1.211
21 H -0.222 1.222
22 H -0.183 1.183
23 C 0.027 3.973
24 H 0.065 0.935
25 C -0.205 4.205
26 H 0.093 0.907
27 H 0.098 0.902
28 H 0.092 0.908
29 H 0.068 0.932
30 H 0.067 0.933
31 H 0.257 0.743
32 H 0.178 0.822
33 H 0.181 0.819
34 H 0.131 0.869
35 H 0.114 0.886
36 H 0.105 0.895
37 H 0.081 0.919
38 H 0.195 0.805
39 H 0.066 0.934
40 H 0.088 0.912
41 H 0.077 0.923
42 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -26.775 -11.810 -4.219 29.567
hybrid contribution 1.047 -0.238 0.976 1.451
sum -25.728 -12.048 -3.243 28.594
Atomic orbital electron populations
1.21940 0.91436 1.04085 1.03582 1.21320 0.96404 0.82728 1.00911
1.45894 1.06095 1.09759 1.75541 1.20608 0.82871 0.91396 0.76225
1.90866 1.56311 1.47577 1.48995 1.21620 0.91047 0.95822 1.10327
1.20485 0.90713 0.81839 0.76486 1.90832 1.70810 1.31925 1.49836
1.48627 1.06211 1.06826 1.73092 1.22607 0.96886 0.79306 1.02946
1.23359 0.95007 0.99918 1.00694 1.21430 0.87153 0.90718 0.94371
0.91110 1.42735 1.34963 1.20426 1.40792 1.18987 1.07132 0.94943
1.14124 0.91325 1.25348 0.98704 0.98849 1.02077 1.69842 1.23485
1.26411 1.43230 0.85581 0.78553 0.79087 0.79551 1.21068 1.22194
1.18349 1.21576 0.81366 0.96512 0.97895 0.93540 1.21960 1.00881
1.00485 0.97218 0.90739 0.90203 0.90845 0.93192 0.93342 0.74255
0.82233 0.81854 0.86882 0.88598 0.89506 0.91944 0.80514 0.93383
0.91199 0.92254 0.93318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.84 10.03 71.98 0.72 -0.12 16
2 C 0.11 1.50 6.39 86.38 0.55 2.05 16
3 N -0.72 -9.02 5.56 -463.05 -2.57 -11.60 16
4 C 0.50 10.97 7.82 87.66 0.69 11.65 16
5 O -0.56 -20.09 14.18 20.39 0.29 -19.80 16
6 C -0.15 -2.15 5.19 29.10 0.15 -2.00 16
7 C 0.52 14.41 7.63 87.65 0.67 15.08 16
8 O -0.56 -22.42 13.20 20.42 0.27 -22.15 16
9 N -0.61 -15.94 3.07 -787.97 -2.42 -18.36 16
10 C 0.10 1.85 6.69 86.86 0.58 2.43 16
11 C -0.15 -4.06 6.77 31.99 0.22 -3.84 16
12 C 0.17 6.05 3.12 46.20 0.14 6.19 16
13 H 0.07 2.53 7.84 -2.39 -0.02 2.51 16
14 N -0.75 -33.79 5.05 -317.23 -1.60 -35.39 16
15 C -0.22 -12.06 10.46 84.03 0.88 -11.18 16
16 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16
17 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16
18 N -0.98 -61.62 13.97 21.65 0.30 -61.32 16
19 Si 0.94 45.94 27.74 68.60 1.90 47.85 16
20 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16
21 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16
22 H -0.26 -11.63 6.52 99.48 0.65 -10.98 16
23 C 0.13 4.36 3.20 45.36 0.15 4.51 16
24 H 0.05 1.79 7.69 -2.39 -0.02 1.77 16
25 C -0.15 -4.83 9.11 71.98 0.66 -4.17 16
26 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16
27 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16
28 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16
29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16
30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
31 H 0.42 1.61 8.47 -92.71 -0.79 0.82 16
32 H 0.16 1.10 7.85 -2.39 -0.02 1.08 16
33 H 0.16 1.00 8.14 -2.38 -0.02 0.98 16
34 H 0.11 1.12 7.48 -2.39 -0.02 1.10 16
35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16
36 H 0.09 2.27 8.14 -2.39 -0.02 2.26 16
37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
38 H 0.36 16.50 5.37 -92.71 -0.50 16.00 16
39 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16
40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
41 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16
42 H 0.05 1.74 6.87 -2.39 -0.02 1.73 16
Total: -1.00 -86.05 342.92 1.72 -84.33
By element:
Atomic # 1 Polarization: 19.05 SS G_CDS: -0.32 Total: 18.73 kcal
Atomic # 6 Polarization: 11.84 SS G_CDS: 5.87 Total: 17.71 kcal
Atomic # 7 Polarization: -120.37 SS G_CDS: -6.29 Total: -126.66 kcal
Atomic # 8 Polarization: -42.51 SS G_CDS: 0.56 Total: -41.95 kcal
Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.85 kcal
Total: -86.05 1.72 -84.33 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001486076274.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.561 kcal
(2) G-P(sol) polarization free energy of solvation -86.054 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.494 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.332 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.772 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds