Wall clock time and date at job start Tue Mar 31 2020 02:59:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 O 1.21284 * 119.99834 * 2 1
4 4 N 1.34774 * 120.00090 * 180.02562 * 2 1 3
5 5 C 1.46494 * 119.99949 * 180.02562 * 4 2 1
6 6 H 1.09003 * 110.01808 * 325.05647 * 5 4 2
7 7 C 1.53869 * 110.03766 * 86.44994 * 5 4 2
8 8 C 1.54266 * 106.60031 * 119.33260 * 7 5 4
9 9 C 1.54894 * 104.31305 * 336.32486 * 8 7 5
10 10 H 1.08993 * 110.76071 * 279.69749 * 9 8 7
11 11 C 1.53004 * 110.75410 * 156.31914 * 9 8 7
12 12 N 1.46898 * 109.46692 * 66.46025 * 11 9 8
13 13 C 1.46900 * 110.99606 * 179.97438 * 12 11 9
14 14 C 1.50703 * 109.46968 * 179.97438 * 13 12 11
15 15 O 1.21290 * 120.00197 * 0.02562 * 14 13 12
16 16 N 1.34780 * 120.00074 * 179.97438 * 14 13 12
17 17 C 1.37090 * 120.00075 * 180.02562 * 16 14 13
18 18 H 1.08009 * 120.00143 * 359.97438 * 17 16 14
19 19 C 1.38950 * 120.00093 * 180.02562 * 17 16 14
20 20 N 1.31414 * 119.99816 * 359.97438 * 19 17 16
21 21 Si 1.86802 * 120.00230 * 179.97438 * 19 17 16
22 22 H 1.48504 * 109.47282 * 89.99510 * 21 19 17
23 23 H 1.48496 * 109.47273 * 209.99939 * 21 19 17
24 24 H 1.48505 * 109.46689 * 329.99719 * 21 19 17
25 25 C 1.54266 * 110.07295 * 203.64338 * 5 4 2
26 26 H 1.09001 * 109.47076 * 179.97438 * 1 2 3
27 27 H 1.08995 * 109.47176 * 299.99968 * 1 2 3
28 28 H 1.09002 * 109.47397 * 60.00069 * 1 2 3
29 29 H 0.97002 * 120.00063 * 359.97438 * 4 2 1
30 30 H 1.09001 * 110.02983 * 0.05012 * 7 5 4
31 31 H 1.08995 * 110.03881 * 238.62204 * 7 5 4
32 32 H 1.09002 * 110.48629 * 95.07240 * 8 7 5
33 33 H 1.08998 * 110.48744 * 217.58143 * 8 7 5
34 34 H 1.09005 * 109.46490 * 186.45605 * 11 9 8
35 35 H 1.08995 * 109.47187 * 306.45376 * 11 9 8
36 36 H 1.00899 * 111.00091 * 56.04619 * 12 11 9
37 37 H 1.08998 * 109.47335 * 299.99920 * 13 12 11
38 38 H 1.09003 * 109.47044 * 59.99960 * 13 12 11
39 39 H 0.97001 * 119.99428 * 0.02562 * 16 14 13
40 40 H 0.96998 * 119.99633 * 179.97438 * 20 19 17
41 41 H 1.09005 * 110.48526 * 22.98165 * 25 5 4
42 42 H 1.09007 * 110.48724 * 145.48648 * 25 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0504 0.0000
4 7 2.1809 -1.1672 -0.0005
5 6 3.6459 -1.1671 0.0000
6 1 4.0192 -0.3272 -0.5859
7 6 4.1725 -1.0786 1.4431
8 6 5.0039 -2.3548 1.6879
9 6 4.4464 -3.3768 0.6662
10 1 3.5218 -3.8234 1.0316
11 6 5.4861 -4.4557 0.3563
12 7 5.7239 -5.2661 1.5582
13 6 6.7186 -6.3151 1.2974
14 6 6.9364 -7.1236 2.5505
15 8 6.3229 -6.8528 3.5612
16 7 7.8120 -8.1481 2.5478
17 6 8.0097 -8.8839 3.6875
18 1 7.4641 -8.6423 4.5877
19 6 8.9129 -9.9398 3.6849
20 7 9.5772 -10.2335 2.5897
21 14 9.1828 -10.9420 5.2381
22 1 8.2311 -12.0816 5.2635
23 1 10.5747 -11.4589 5.2580
24 1 8.9571 -10.0819 6.4275
25 6 4.1756 -2.4941 -0.5817
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8899
28 1 -0.3634 0.5138 -0.8900
29 1 1.6959 -2.0072 -0.0005
30 1 3.3381 -1.0365 2.1431
31 1 4.8013 -0.1957 1.5577
32 1 6.0603 -2.1640 1.4991
33 1 4.8584 -2.7153 2.7062
34 1 5.1179 -5.0951 -0.4461
35 1 6.4182 -3.9836 0.0459
36 1 4.8627 -5.6626 1.9032
37 1 6.3587 -6.9674 0.5017
38 1 7.6595 -5.8562 0.9934
39 1 8.3023 -8.3649 1.7393
40 1 10.2079 -10.9704 2.5880
41 1 3.4238 -2.9575 -1.2206
42 1 5.0970 -2.3254 -1.1392
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001486190466.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:59:47
Heat of formation + Delta-G solvation = -91.686254 kcal
Electronic energy + Delta-G solvation = -21606.411758 eV
Core-core repulsion = 18199.342823 eV
Total energy + Delta-G solvation = -3407.068935 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.20544 -38.52850 -37.99479 -35.41239 -33.95370 -33.45978 -31.23689 -30.55082
-29.54356 -28.06289 -26.31434 -24.36201 -22.80269 -21.26952 -20.35059 -20.26410
-19.16089 -17.87557 -17.21022 -16.60154 -16.12032 -15.77282 -15.33666 -14.90330
-14.85714 -14.39609 -14.17294 -13.92984 -13.66337 -13.37861 -13.24678 -13.05463
-12.71225 -12.48970 -11.97040 -11.89860 -11.63794 -11.53105 -11.36985 -11.08050
-11.05914 -10.92720 -10.75326 -10.58204 -10.39512 -10.21703 -10.12009 -9.50979
-9.32042 -8.44974 -8.03313 -7.95414 -6.41787 -3.82548 2.37148 2.96737
3.17645 3.26281 3.32440 3.91259 4.05647 4.25117 4.31980 4.56759
4.57676 4.75799 4.83072 5.04823 5.10362 5.22740 5.24402 5.28362
5.31883 5.36396 5.43074 5.47275 5.53393 5.60733 5.74181 5.80664
5.85011 5.95064 5.99434 6.02711 6.26337 6.29492 6.34192 6.39938
7.22584 7.24473 7.55128 7.67992 7.95946 8.06484 8.61478 9.17958
9.54565 10.06114 10.75990
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.049761 B = 0.002312 C = 0.002280
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 562.550049 B =12105.844547 C =12275.675491
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.508 3.492
3 O -0.550 6.550
4 N -0.723 5.723
5 C 0.139 3.861
6 H 0.088 0.912
7 C -0.135 4.135
8 C -0.106 4.106
9 C -0.088 4.088
10 H 0.075 0.925
11 C 0.067 3.933
12 N -0.667 5.667
13 C 0.051 3.949
14 C 0.441 3.559
15 O -0.583 6.583
16 N -0.565 5.565
17 C -0.299 4.299
18 H 0.103 0.897
19 C 0.021 3.979
20 N -0.902 5.902
21 Si 0.930 3.070
22 H -0.278 1.278
23 H -0.284 1.284
24 H -0.269 1.269
25 C -0.125 4.125
26 H 0.075 0.925
27 H 0.094 0.906
28 H 0.093 0.907
29 H 0.400 0.600
30 H 0.066 0.934
31 H 0.068 0.932
32 H 0.069 0.931
33 H 0.074 0.926
34 H 0.025 0.975
35 H 0.072 0.928
36 H 0.348 0.652
37 H 0.042 0.958
38 H 0.085 0.915
39 H 0.392 0.608
40 H 0.271 0.729
41 H 0.071 0.929
42 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.950 14.534 -9.914 22.453
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.296 3.704
3 O -0.428 6.428
4 N -0.375 5.375
5 C 0.034 3.966
6 H 0.106 0.894
7 C -0.174 4.174
8 C -0.144 4.144
9 C -0.107 4.107
10 H 0.093 0.907
11 C -0.063 4.063
12 N -0.299 5.299
13 C -0.082 4.082
14 C 0.226 3.774
15 O -0.468 6.468
16 N -0.201 5.201
17 C -0.428 4.428
18 H 0.121 0.879
19 C -0.180 4.180
20 N -0.544 5.544
21 Si 0.757 3.243
22 H -0.204 1.204
23 H -0.209 1.209
24 H -0.194 1.194
25 C -0.164 4.164
26 H 0.094 0.906
27 H 0.112 0.888
28 H 0.111 0.889
29 H 0.235 0.765
30 H 0.084 0.916
31 H 0.086 0.914
32 H 0.087 0.913
33 H 0.093 0.907
34 H 0.043 0.957
35 H 0.090 0.910
36 H 0.167 0.833
37 H 0.060 0.940
38 H 0.103 0.897
39 H 0.225 0.775
40 H 0.081 0.919
41 H 0.089 0.911
42 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -13.311 15.760 -8.997 22.505
hybrid contribution -0.206 -1.808 -0.353 1.854
sum -13.517 13.952 -9.350 21.559
Atomic orbital electron populations
1.21859 0.91879 1.04188 1.05235 1.20828 0.90574 0.83647 0.75398
1.90726 1.70778 1.31457 1.49798 1.46333 1.07398 1.08613 1.75174
1.21621 0.79215 0.98669 0.97079 0.89416 1.22627 1.00083 0.99034
0.95663 1.22278 0.99277 0.92907 0.99933 1.22177 0.98403 0.95082
0.95073 0.90693 1.21966 0.98465 0.94578 0.91281 1.60057 1.14784
1.25127 1.29913 1.21669 0.97171 0.92978 0.96391 1.19832 0.84300
0.83487 0.89742 1.90519 1.51184 1.70580 1.34467 1.41872 1.37054
1.27544 1.13661 1.19701 1.22043 1.09642 0.91454 0.87937 1.25270
0.96335 0.97870 0.98554 1.69614 1.27039 1.30392 1.27316 0.85852
0.77411 0.79612 0.81380 1.20439 1.20928 1.19400 1.22748 1.01674
0.94273 0.97662 0.90598 0.88786 0.88862 0.76532 0.91568 0.91354
0.91272 0.90690 0.95671 0.90998 0.83341 0.94012 0.89671 0.77469
0.91889 0.91069 0.89936
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.89 10.39 36.01 0.37 -0.51 16
2 C 0.51 4.71 7.93 -10.98 -0.09 4.62 16
3 O -0.55 -7.66 16.78 5.55 0.09 -7.57 16
4 N -0.72 -5.49 4.94 -52.73 -0.26 -5.75 16
5 C 0.14 1.23 3.22 -66.82 -0.22 1.02 16
6 H 0.09 0.91 7.61 -51.93 -0.39 0.51 16
7 C -0.14 -1.35 6.59 -25.62 -0.17 -1.52 16
8 C -0.11 -1.14 6.09 -25.07 -0.15 -1.30 16
9 C -0.09 -0.84 3.10 -88.43 -0.27 -1.12 16
10 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
11 C 0.07 0.76 5.14 -3.82 -0.02 0.74 16
12 N -0.67 -10.37 5.94 -115.05 -0.68 -11.05 16
13 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16
14 C 0.44 10.39 7.82 -10.98 -0.09 10.31 16
15 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16
16 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16
17 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16
18 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16
19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16
20 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16
21 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16
22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
25 C -0.13 -0.96 5.89 -24.88 -0.15 -1.10 16
26 H 0.08 0.22 7.91 -51.93 -0.41 -0.19 16
27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
29 H 0.40 2.04 8.40 -40.82 -0.34 1.69 16
30 H 0.07 0.70 7.92 -51.93 -0.41 0.28 16
31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
32 H 0.07 0.78 8.01 -51.93 -0.42 0.37 16
33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
34 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16
35 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16
36 H 0.35 5.58 8.43 -39.29 -0.33 5.25 16
37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16
38 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16
39 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16
40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16
41 H 0.07 0.46 7.98 -51.93 -0.41 0.05 16
42 H 0.08 0.61 8.06 -51.93 -0.42 0.20 16
LS Contribution 351.07 15.07 5.29 5.29
Total: -1.00 -33.63 351.07 -7.65 -41.28
By element:
Atomic # 1 Polarization: 18.54 SS G_CDS: -6.78 Total: 11.76 kcal
Atomic # 6 Polarization: 5.00 SS G_CDS: -1.05 Total: 3.95 kcal
Atomic # 7 Polarization: -54.75 SS G_CDS: -0.28 Total: -55.03 kcal
Atomic # 8 Polarization: -23.49 SS G_CDS: 0.18 Total: -23.30 kcal
Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -33.63 -7.65 -41.28 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001486190466.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.405 kcal
(2) G-P(sol) polarization free energy of solvation -33.629 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.034 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.686 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds