Wall clock time and date at job start Tue Mar 31 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00348 * 2 1 4 4 H 1.08006 * 120.00219 * 154.60743 * 3 2 1 5 5 C 1.38815 * 120.00095 * 334.60857 * 3 2 1 6 6 N 1.31622 * 119.99508 * 3.91403 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 183.91118 * 5 3 2 8 8 H 1.48506 * 109.47095 * 90.00165 * 7 5 3 9 9 H 1.48502 * 109.47024 * 209.99822 * 7 5 3 10 10 H 1.48499 * 109.47257 * 330.00226 * 7 5 3 11 11 C 1.46503 * 119.99698 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47113 * 90.00226 * 11 2 1 13 13 C 1.52993 * 109.47469 * 180.02562 * 12 11 2 14 14 N 1.46502 * 109.47601 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00298 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99808 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99973 * 179.97438 * 15 14 13 18 18 H 1.08999 * 110.21775 * 40.69881 * 17 15 14 19 19 C 1.54478 * 110.24467 * 278.76952 * 17 15 14 20 20 C 1.54632 * 101.76412 * 215.58664 * 19 17 15 21 21 C 1.51282 * 104.19703 * 24.79642 * 20 19 17 22 22 O 1.21277 * 124.94266 * 163.77555 * 21 20 19 23 23 N 1.34567 * 110.13972 * 343.67858 * 21 20 19 24 24 C 1.46496 * 124.43384 * 179.64154 * 23 21 20 25 25 H 1.09002 * 109.46877 * 84.46501 * 1 2 3 26 26 H 1.08993 * 109.47313 * 204.46891 * 1 2 3 27 27 H 1.08995 * 109.46565 * 324.47166 * 1 2 3 28 28 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 29 29 H 1.08998 * 109.47173 * 209.99803 * 11 2 1 30 30 H 1.09000 * 109.47583 * 330.00188 * 11 2 1 31 31 H 1.09003 * 109.47186 * 300.00048 * 12 11 2 32 32 H 1.09000 * 109.46927 * 59.99560 * 12 11 2 33 33 H 1.09003 * 109.46936 * 300.00177 * 13 12 11 34 34 H 1.09000 * 109.47425 * 59.99840 * 13 12 11 35 35 H 0.96997 * 119.99648 * 359.97438 * 14 13 12 36 36 H 1.09003 * 110.96653 * 333.69990 * 19 17 15 37 37 H 1.08995 * 110.96934 * 97.42876 * 19 17 15 38 38 H 1.09002 * 110.48621 * 143.47572 * 20 19 17 39 39 H 1.09001 * 110.48479 * 266.11829 * 20 19 17 40 40 H 1.08995 * 109.47332 * 270.07382 * 24 23 21 41 41 H 1.08994 * 109.47216 * 30.07928 * 24 23 21 42 42 H 1.09008 * 109.46994 * 150.07225 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1516 1.2310 0.4011 5 6 1.5564 2.3300 -0.5155 6 7 0.3088 2.2930 -0.9334 7 14 2.5283 3.9220 -0.6160 8 1 3.2259 3.9943 -1.9250 9 1 1.6031 5.0760 -0.4837 10 1 3.5287 3.9613 0.4808 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7111 -1.4417 13 6 3.2168 -3.0364 -1.4412 14 7 3.4616 -3.4596 -2.8223 15 6 4.1232 -4.6078 -3.0681 16 8 4.5165 -5.2904 -2.1459 17 6 4.3744 -5.0434 -4.4887 18 1 4.6502 -4.1858 -5.1025 19 6 3.1185 -5.7326 -5.0665 20 6 3.7434 -6.8281 -5.9611 21 6 5.1068 -7.0712 -5.3523 22 8 5.8048 -8.0376 -5.5752 23 7 5.4338 -6.0583 -4.5289 24 6 6.6840 -5.9788 -3.7694 25 1 -0.3633 0.0991 -1.0229 26 1 -0.3633 -0.9353 0.4256 27 1 -0.3632 0.8363 0.5972 28 1 -0.1057 3.0925 -1.2939 29 1 3.1499 -1.1383 0.5143 30 1 1.6084 -2.0282 0.5147 31 1 1.5001 -1.8416 -1.9556 32 1 3.0416 -0.9516 -1.9559 33 1 4.1692 -2.9063 -0.9273 34 1 2.6274 -3.7957 -0.9272 35 1 3.1467 -2.9139 -3.5598 36 1 2.5158 -6.1740 -4.2727 37 1 2.5281 -5.0340 -5.6593 38 1 3.1428 -7.7371 -5.9269 39 1 3.8416 -6.4729 -6.9869 40 1 6.5498 -6.4538 -2.7977 41 1 7.4753 -6.4900 -4.3176 42 1 6.9573 -4.9330 -3.6280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490236611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:39 Heat of formation + Delta-G solvation = -45.819968 kcal Electronic energy + Delta-G solvation = -22180.840286 eV Core-core repulsion = 18775.760262 eV Total energy + Delta-G solvation = -3405.080024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.11743 -39.23024 -36.63190 -36.13952 -34.86677 -33.10631 -32.07456 -30.26507 -28.48966 -26.87022 -25.97909 -25.23534 -22.99075 -21.92745 -20.95617 -20.24058 -19.59256 -17.80077 -17.13363 -16.80015 -16.25207 -15.90456 -15.52758 -15.10971 -14.67953 -14.38120 -14.18653 -13.86069 -13.75473 -13.34802 -13.14892 -12.92964 -12.77881 -12.69535 -12.36083 -12.16933 -11.67956 -11.52963 -11.34044 -11.13005 -10.87853 -10.79195 -10.50378 -10.25251 -10.13354 -10.06003 -9.95363 -9.81411 -9.10880 -8.91201 -8.56178 -6.79363 -5.78605 -3.25406 2.26376 2.34909 2.63595 3.12751 3.33407 3.40205 3.41270 3.92998 4.01450 4.35503 4.44527 4.54047 4.67699 4.94268 5.06464 5.17880 5.26118 5.38494 5.39903 5.41864 5.43160 5.50687 5.70865 5.76318 5.87586 6.05542 6.11822 6.12665 6.37214 6.47580 6.74066 6.76687 6.78125 6.93541 7.38723 7.44889 7.72129 7.80702 7.86547 8.06244 8.37879 9.21273 9.82572 10.32383 11.26082 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029216 B = 0.002846 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.135433 B = 9836.892079 C = 9964.688441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.606 5.606 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.157 3.843 12 C -0.150 4.150 13 C 0.120 3.880 14 N -0.719 5.719 15 C 0.502 3.498 16 O -0.531 6.531 17 C 0.111 3.889 18 H 0.105 0.895 19 C -0.121 4.121 20 C -0.153 4.153 21 C 0.519 3.481 22 O -0.532 6.532 23 N -0.601 5.601 24 C 0.100 3.900 25 H 0.024 0.976 26 H -0.009 1.009 27 H 0.052 0.948 28 H 0.252 0.748 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.997 -13.532 -9.704 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.329 5.329 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.555 5.555 7 Si 0.733 3.267 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.029 3.971 12 C -0.191 4.191 13 C -0.004 4.004 14 N -0.371 5.371 15 C 0.286 3.714 16 O -0.407 6.407 17 C 0.003 3.997 18 H 0.123 0.877 19 C -0.159 4.159 20 C -0.193 4.193 21 C 0.306 3.694 22 O -0.408 6.408 23 N -0.335 5.335 24 C -0.041 4.041 25 H 0.042 0.958 26 H 0.010 0.990 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.237 0.763 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.608 -14.366 -9.108 17.911 hybrid contribution 0.289 1.426 -0.498 1.537 sum 5.897 -12.940 -9.606 17.161 Atomic orbital electron populations 1.20878 0.82312 0.95398 0.99273 1.43954 1.02055 1.00630 1.86230 1.19225 0.99257 0.86410 1.33565 0.91385 1.25168 0.96567 0.98779 0.98840 1.70092 1.11269 1.27989 1.46131 0.86267 0.79270 0.83169 0.77953 1.21403 1.21679 1.20514 1.20704 0.95961 0.88281 0.92170 1.22562 0.99567 0.93856 1.03124 1.21551 1.00422 0.97233 0.81169 1.46164 1.57429 1.23192 1.10296 1.20604 0.78678 0.81405 0.90755 1.90726 1.50557 1.53669 1.45712 1.21696 0.89693 0.93241 0.95081 0.87707 1.22610 0.95333 0.98071 0.99888 1.22359 0.94700 1.01343 1.00865 1.20887 0.88367 0.81448 0.78654 1.90727 1.57122 1.29801 1.63170 1.47893 1.18511 1.21784 1.45340 1.21570 0.83732 1.02417 0.96379 0.95758 0.99008 0.92923 0.93734 0.93693 0.94330 0.92115 0.91268 0.91674 0.91804 0.76343 0.89238 0.87869 0.87528 0.87300 0.91347 0.90874 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.00 8.99 59.85 0.54 4.53 16 2 N -0.61 -14.71 2.93 -181.12 -0.53 -15.24 16 3 C -0.25 -6.78 9.67 -15.06 -0.15 -6.93 16 4 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 5 C 0.00 0.12 5.38 -17.43 -0.09 0.02 16 6 N -0.91 -25.62 10.13 55.49 0.56 -25.06 16 7 Si 0.90 21.17 29.56 -169.99 -5.02 16.14 16 8 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 C 0.16 3.00 5.71 -4.04 -0.02 2.98 16 12 C -0.15 -2.40 5.65 -26.73 -0.15 -2.55 16 13 C 0.12 1.60 5.67 -4.04 -0.02 1.57 16 14 N -0.72 -7.80 5.56 -60.30 -0.33 -8.13 16 15 C 0.50 5.79 6.71 -10.99 -0.07 5.72 16 16 O -0.53 -8.22 15.01 5.56 0.08 -8.14 16 17 C 0.11 0.94 3.70 -68.16 -0.25 0.69 16 18 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 19 C -0.12 -0.75 6.68 -25.10 -0.17 -0.92 16 20 C -0.15 -1.06 6.86 -26.74 -0.18 -1.24 16 21 C 0.52 6.01 8.03 -10.79 -0.09 5.92 16 22 O -0.53 -8.22 17.60 5.56 0.10 -8.13 16 23 N -0.60 -6.52 3.01 -173.98 -0.52 -7.04 16 24 C 0.10 1.08 9.59 59.84 0.57 1.65 16 25 H 0.02 0.62 7.43 -51.93 -0.39 0.23 16 26 H -0.01 -0.18 7.83 -51.93 -0.41 -0.59 16 27 H 0.05 1.39 7.04 -51.93 -0.37 1.02 16 28 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 30 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.40 3.42 8.47 -40.82 -0.35 3.07 16 36 H 0.09 0.64 7.91 -51.93 -0.41 0.23 16 37 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 41 H 0.07 0.75 7.93 -51.93 -0.41 0.34 16 42 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -33.90 347.16 -7.42 -41.31 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.89 Total: -2.39 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -0.09 Total: 11.44 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.83 Total: -55.47 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.18 Total: -16.27 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.90 -7.42 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490236611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.506 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds