Wall clock time and date at job start Tue Mar 31 2020 03:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00348 * 2 1 4 4 H 1.08006 * 120.00219 * 154.60743 * 3 2 1 5 5 C 1.38815 * 120.00095 * 334.60857 * 3 2 1 6 6 N 1.31622 * 119.99508 * 3.91403 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 183.91118 * 5 3 2 8 8 H 1.48506 * 109.47095 * 90.00165 * 7 5 3 9 9 H 1.48502 * 109.47024 * 209.99822 * 7 5 3 10 10 H 1.48499 * 109.47257 * 330.00226 * 7 5 3 11 11 C 1.46503 * 119.99698 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47113 * 90.00226 * 11 2 1 13 13 C 1.52993 * 109.47469 * 180.02562 * 12 11 2 14 14 N 1.46502 * 109.47601 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00298 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99808 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99973 * 179.97438 * 15 14 13 18 18 H 1.08999 * 110.21775 * 40.69881 * 17 15 14 19 19 C 1.54478 * 110.24467 * 278.76952 * 17 15 14 20 20 C 1.54632 * 101.76412 * 215.58664 * 19 17 15 21 21 C 1.51282 * 104.19703 * 24.79642 * 20 19 17 22 22 O 1.21277 * 124.94266 * 163.77555 * 21 20 19 23 23 N 1.34567 * 110.13972 * 343.67858 * 21 20 19 24 24 C 1.46496 * 124.43384 * 179.64154 * 23 21 20 25 25 H 1.09002 * 109.46877 * 84.46501 * 1 2 3 26 26 H 1.08993 * 109.47313 * 204.46891 * 1 2 3 27 27 H 1.08995 * 109.46565 * 324.47166 * 1 2 3 28 28 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 29 29 H 1.08998 * 109.47173 * 209.99803 * 11 2 1 30 30 H 1.09000 * 109.47583 * 330.00188 * 11 2 1 31 31 H 1.09003 * 109.47186 * 300.00048 * 12 11 2 32 32 H 1.09000 * 109.46927 * 59.99560 * 12 11 2 33 33 H 1.09003 * 109.46936 * 300.00177 * 13 12 11 34 34 H 1.09000 * 109.47425 * 59.99840 * 13 12 11 35 35 H 0.96997 * 119.99648 * 359.97438 * 14 13 12 36 36 H 1.09003 * 110.96653 * 333.69990 * 19 17 15 37 37 H 1.08995 * 110.96934 * 97.42876 * 19 17 15 38 38 H 1.09002 * 110.48621 * 143.47572 * 20 19 17 39 39 H 1.09001 * 110.48479 * 266.11829 * 20 19 17 40 40 H 1.08995 * 109.47332 * 270.07382 * 24 23 21 41 41 H 1.08994 * 109.47216 * 30.07928 * 24 23 21 42 42 H 1.09008 * 109.46994 * 150.07225 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1516 1.2310 0.4011 5 6 1.5564 2.3300 -0.5155 6 7 0.3088 2.2930 -0.9334 7 14 2.5283 3.9220 -0.6160 8 1 3.2259 3.9943 -1.9250 9 1 1.6031 5.0760 -0.4837 10 1 3.5287 3.9613 0.4808 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7111 -1.4417 13 6 3.2168 -3.0364 -1.4412 14 7 3.4616 -3.4596 -2.8223 15 6 4.1232 -4.6078 -3.0681 16 8 4.5165 -5.2904 -2.1459 17 6 4.3744 -5.0434 -4.4887 18 1 4.6502 -4.1858 -5.1025 19 6 3.1185 -5.7326 -5.0665 20 6 3.7434 -6.8281 -5.9611 21 6 5.1068 -7.0712 -5.3523 22 8 5.8048 -8.0376 -5.5752 23 7 5.4338 -6.0583 -4.5289 24 6 6.6840 -5.9788 -3.7694 25 1 -0.3633 0.0991 -1.0229 26 1 -0.3633 -0.9353 0.4256 27 1 -0.3632 0.8363 0.5972 28 1 -0.1057 3.0925 -1.2939 29 1 3.1499 -1.1383 0.5143 30 1 1.6084 -2.0282 0.5147 31 1 1.5001 -1.8416 -1.9556 32 1 3.0416 -0.9516 -1.9559 33 1 4.1692 -2.9063 -0.9273 34 1 2.6274 -3.7957 -0.9272 35 1 3.1467 -2.9139 -3.5598 36 1 2.5158 -6.1740 -4.2727 37 1 2.5281 -5.0340 -5.6593 38 1 3.1428 -7.7371 -5.9269 39 1 3.8416 -6.4729 -6.9869 40 1 6.5498 -6.4538 -2.7977 41 1 7.4753 -6.4900 -4.3176 42 1 6.9573 -4.9330 -3.6280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490236611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:38 Heat of formation + Delta-G solvation = -69.877351 kcal Electronic energy + Delta-G solvation = -22181.883492 eV Core-core repulsion = 18775.760262 eV Total energy + Delta-G solvation = -3406.123230 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.93664 -40.19812 -37.98241 -37.31663 -36.16554 -33.96908 -33.56819 -31.79975 -29.42670 -27.92411 -27.65592 -26.68142 -23.97193 -23.15884 -22.14888 -21.52210 -20.45751 -18.77133 -18.62650 -17.88977 -17.19922 -16.96440 -16.68157 -16.58781 -15.88899 -15.62052 -15.28709 -14.85124 -14.75598 -14.64179 -14.56224 -14.45942 -13.65903 -13.53159 -13.27993 -13.12580 -12.96764 -12.86236 -12.75914 -12.67459 -12.39336 -12.24921 -12.06490 -12.00888 -11.87151 -11.42191 -11.16923 -10.93814 -10.59247 -10.11494 -9.78873 -8.74002 -7.81556 -5.29840 1.40393 1.48017 1.48750 1.49642 1.58115 1.83766 2.25993 2.52603 3.26513 3.33126 3.40322 3.69988 3.71824 3.99105 4.06397 4.16858 4.28026 4.33292 4.39069 4.52821 4.59037 4.69036 4.80322 4.82282 4.85185 4.92784 4.94643 4.97579 5.03758 5.31966 5.34569 5.38466 5.45273 5.52617 5.68064 5.82029 5.98161 6.38046 6.52370 7.01528 7.18682 7.20118 7.91086 8.34928 9.21851 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029216 B = 0.002846 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.135433 B = 9836.892079 C = 9964.688441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.624 5.624 3 C -0.262 4.262 4 H 0.069 0.931 5 C -0.049 4.049 6 N -0.937 5.937 7 Si 0.966 3.034 8 H -0.282 1.282 9 H -0.296 1.296 10 H -0.272 1.272 11 C 0.151 3.849 12 C -0.128 4.128 13 C 0.134 3.866 14 N -0.709 5.709 15 C 0.503 3.497 16 O -0.575 6.575 17 C 0.112 3.888 18 H 0.142 0.858 19 C -0.112 4.112 20 C -0.141 4.141 21 C 0.504 3.496 22 O -0.582 6.582 23 N -0.608 5.608 24 C 0.100 3.900 25 H 0.004 0.996 26 H 0.023 0.977 27 H 0.021 0.979 28 H 0.247 0.753 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.417 0.583 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.114 0.886 39 H 0.138 0.862 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 -13.366 -11.087 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.348 5.348 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.244 4.244 6 N -0.584 5.584 7 Si 0.794 3.206 8 H -0.209 1.209 9 H -0.223 1.223 10 H -0.197 1.197 11 C 0.024 3.976 12 C -0.169 4.169 13 C 0.009 3.991 14 N -0.361 5.361 15 C 0.289 3.711 16 O -0.454 6.454 17 C 0.005 3.995 18 H 0.159 0.841 19 C -0.150 4.150 20 C -0.181 4.181 21 C 0.294 3.706 22 O -0.463 6.463 23 N -0.341 5.341 24 C -0.042 4.042 25 H 0.022 0.978 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.254 0.746 36 H 0.097 0.903 37 H 0.161 0.839 38 H 0.132 0.868 39 H 0.156 0.844 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.526 -14.190 -10.503 18.499 hybrid contribution 0.333 1.322 0.023 1.364 sum 5.859 -12.868 -10.480 17.600 Atomic orbital electron populations 1.20606 0.82670 0.95614 0.97654 1.44183 1.02236 1.01757 1.86631 1.19518 0.99256 0.87607 1.32881 0.91277 1.25862 0.97429 1.01802 0.99262 1.70260 1.12484 1.28358 1.47322 0.85291 0.77876 0.79331 0.78084 1.20909 1.22295 1.19743 1.20876 0.95759 0.86686 0.94276 1.22175 0.99584 0.94673 1.00474 1.21196 0.99566 0.95650 0.82653 1.45967 1.57156 1.23282 1.09722 1.21136 0.77569 0.80704 0.91729 1.90723 1.52289 1.54963 1.47401 1.21977 0.90255 0.94017 0.93281 0.84111 1.22722 0.94278 0.98258 0.99719 1.22413 0.91506 1.02137 1.02041 1.21787 0.89714 0.80593 0.78457 1.90692 1.58955 1.31679 1.64957 1.48117 1.18816 1.22353 1.44785 1.21507 0.84279 1.02990 0.95381 0.97776 0.95890 0.96035 0.94320 0.93591 0.92604 0.92223 0.92725 0.92388 0.91836 0.74606 0.90286 0.83859 0.86760 0.84410 0.93530 0.90990 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.60 8.99 127.77 1.15 9.75 16 2 N -0.62 -29.88 2.93 -726.93 -2.13 -32.01 16 3 C -0.26 -13.85 9.67 84.03 0.81 -13.03 16 4 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 5 C -0.05 -2.63 5.38 84.86 0.46 -2.17 16 6 N -0.94 -53.28 10.13 21.65 0.22 -53.06 16 7 Si 0.97 43.36 29.56 68.60 2.03 45.39 16 8 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 9 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 C 0.15 5.52 5.71 86.38 0.49 6.02 16 12 C -0.13 -3.88 5.65 30.59 0.17 -3.71 16 13 C 0.13 3.31 5.67 86.38 0.49 3.80 16 14 N -0.71 -13.49 5.56 -463.07 -2.57 -16.06 16 15 C 0.50 10.54 6.71 87.66 0.59 11.12 16 16 O -0.57 -17.39 15.01 -3.03 -0.05 -17.44 16 17 C 0.11 1.55 3.70 44.70 0.17 1.71 16 18 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 19 C -0.11 -0.95 6.68 31.65 0.21 -0.74 16 20 C -0.14 -1.52 6.86 30.59 0.21 -1.31 16 21 C 0.50 11.13 8.03 87.87 0.71 11.84 16 22 O -0.58 -18.23 17.60 -3.02 -0.05 -18.28 16 23 N -0.61 -12.38 3.01 -822.87 -2.48 -14.85 16 24 C 0.10 2.15 9.59 127.77 1.23 3.38 16 25 H 0.00 0.20 7.43 -2.39 -0.02 0.18 16 26 H 0.02 0.93 7.83 -2.39 -0.02 0.91 16 27 H 0.02 1.13 7.04 -2.39 -0.02 1.11 16 28 H 0.25 13.71 8.31 -92.70 -0.77 12.94 16 29 H 0.05 1.67 8.04 -2.39 -0.02 1.65 16 30 H 0.06 1.85 7.86 -2.39 -0.02 1.83 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.42 5.62 8.47 -92.71 -0.79 4.84 16 36 H 0.08 0.89 7.91 -2.39 -0.02 0.87 16 37 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.05 1.19 7.48 -2.39 -0.02 1.17 16 41 H 0.07 1.52 7.93 -2.39 -0.02 1.50 16 42 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -75.36 347.16 1.87 -73.49 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.22 Total: 6.17 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 6.68 Total: 26.65 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -6.96 Total: -115.99 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.10 Total: -35.72 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -75.36 1.87 -73.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490236611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.616 kcal (2) G-P(sol) polarization free energy of solvation -75.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds