Wall clock time and date at job start Tue Mar 31 2020 02:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47531 * 2 1 4 4 C 1.36941 * 119.99954 * 275.30949 * 3 2 1 5 5 H 1.08001 * 119.99861 * 37.58522 * 4 3 2 6 6 C 1.38812 * 119.99923 * 217.57595 * 4 3 2 7 7 N 1.31617 * 119.99834 * 21.42764 * 6 4 3 8 8 Si 1.86800 * 119.99807 * 201.42673 * 6 4 3 9 9 H 1.48503 * 109.47336 * 60.00442 * 8 6 4 10 10 H 1.48504 * 109.47154 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47274 * 299.99878 * 8 6 4 12 12 C 1.46502 * 120.00038 * 95.30988 * 3 2 1 13 13 C 1.52992 * 109.47147 * 270.00336 * 12 3 2 14 14 C 1.53003 * 109.47286 * 179.97438 * 13 12 3 15 15 N 1.46498 * 109.47422 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99805 * 180.02562 * 15 14 13 17 17 O 1.21281 * 120.00226 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99395 * 180.02562 * 16 15 14 19 19 H 1.09000 * 110.21644 * 320.46734 * 18 16 15 20 20 C 1.54480 * 110.32151 * 82.45443 * 18 16 15 21 21 C 1.54624 * 101.76362 * 93.61875 * 20 18 16 22 22 C 1.51276 * 104.19943 * 24.79752 * 21 20 18 23 23 O 1.21282 * 124.94579 * 163.76421 * 22 21 20 24 24 N 1.34417 * 110.11516 * 343.74539 * 22 21 20 25 25 H 1.09003 * 109.46672 * 300.00093 * 1 2 3 26 26 H 1.09002 * 109.46687 * 59.99446 * 1 2 3 27 27 H 1.09001 * 109.47544 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46672 * 239.99907 * 2 1 3 29 29 H 1.08997 * 109.47384 * 120.00428 * 2 1 3 30 30 H 0.97002 * 119.99628 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47023 * 149.99947 * 12 3 2 32 32 H 1.09005 * 109.46709 * 30.00258 * 12 3 2 33 33 H 1.08998 * 109.47477 * 59.99889 * 13 12 3 34 34 H 1.09005 * 109.47252 * 299.99589 * 13 12 3 35 35 H 1.08998 * 109.46830 * 59.99644 * 14 13 12 36 36 H 1.08996 * 109.46868 * 300.00269 * 14 13 12 37 37 H 0.97002 * 119.99643 * 359.97438 * 15 14 13 38 38 H 1.09002 * 110.96845 * 211.73481 * 20 18 16 39 39 H 1.08996 * 110.96721 * 335.50208 * 20 18 16 40 40 H 1.09001 * 110.48599 * 143.47836 * 21 20 18 41 41 H 1.09002 * 110.48984 * 266.11599 * 21 20 18 42 42 H 0.97003 * 124.34986 * 179.85185 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4106 1.9279 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7979 -0.6490 8 14 3.0996 4.2794 -2.6585 9 1 1.9630 5.1786 -2.3344 10 1 4.3625 5.0606 -2.6669 11 1 2.8847 3.6724 -3.9967 12 6 2.3734 2.0326 1.2633 13 6 1.1428 2.7382 1.8366 14 6 1.5133 3.4180 3.1563 15 7 0.3352 4.0941 3.7049 16 6 0.4251 4.7652 4.8703 17 8 1.4812 4.8089 5.4650 18 6 -0.7870 5.4602 5.4349 19 1 -1.3575 5.9320 4.6349 20 6 -1.6734 4.4542 6.2022 21 6 -1.1539 4.6163 7.6495 22 6 -0.5714 6.0120 7.6806 23 8 -0.3131 6.6347 8.6888 24 7 -0.3814 6.4616 6.4282 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.0493 3.4025 -0.7835 31 1 3.1619 2.7640 1.0860 32 1 2.7256 1.2831 1.9721 33 1 0.3543 2.0068 2.0139 34 1 0.7905 3.4876 1.1278 35 1 2.3020 4.1493 2.9793 36 1 1.8653 2.6683 3.8648 37 1 -0.5094 4.0594 3.2291 38 1 -2.7259 4.7294 6.1325 39 1 -1.5125 3.4384 5.8415 40 1 -1.9747 4.5295 8.3615 41 1 -0.3826 3.8762 7.8632 42 1 -0.0190 7.3343 6.2091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490317524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:17 Heat of formation + Delta-G solvation = -61.424659 kcal Electronic energy + Delta-G solvation = -22357.307503 eV Core-core repulsion = 18951.550809 eV Total energy + Delta-G solvation = -3405.756694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02364 -39.04987 -36.64845 -36.21052 -34.87152 -31.91140 -31.75292 -31.34647 -28.97299 -28.06948 -25.28889 -23.82008 -22.82769 -21.13820 -20.89873 -20.54299 -19.99732 -17.77221 -17.66712 -16.76634 -16.03625 -15.62609 -15.36393 -14.93873 -14.84911 -14.25198 -13.93283 -13.87718 -13.70116 -13.44382 -13.33153 -13.01819 -12.65031 -12.40850 -11.90659 -11.68469 -11.60910 -11.47941 -11.21631 -11.07048 -10.77953 -10.65969 -10.52460 -10.37794 -10.11756 -10.05202 -9.73631 -9.59855 -9.21907 -8.98050 -8.51160 -6.60733 -5.82792 -3.42163 2.32554 2.46416 2.88254 3.31310 3.34251 3.39630 3.40030 4.00385 4.07213 4.37938 4.43462 4.58770 4.78265 5.00149 5.19795 5.29374 5.34753 5.39671 5.51649 5.57505 5.76768 5.91800 6.02275 6.20439 6.29785 6.36286 6.39007 6.44122 6.53013 6.68072 6.70314 6.73333 6.86960 7.03533 7.12673 7.48273 7.62709 7.78136 7.99162 8.15882 8.48335 9.15632 9.77872 10.36698 11.16792 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.003426 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.679956 B = 8169.928229 C = 8870.352714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.263 4.263 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.120 3.880 15 N -0.720 5.720 16 C 0.492 3.508 17 O -0.530 6.530 18 C 0.112 3.888 19 H 0.113 0.887 20 C -0.120 4.120 21 C -0.157 4.157 22 C 0.528 3.472 23 O -0.534 6.534 24 N -0.709 5.709 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.033 0.967 30 H 0.256 0.744 31 H 0.095 0.905 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.400 0.600 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.968 1.758 10.022 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.392 4.392 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.023 3.977 13 C -0.187 4.187 14 C -0.004 4.004 15 N -0.371 5.371 16 C 0.275 3.725 17 O -0.406 6.406 18 C 0.002 3.998 19 H 0.131 0.869 20 C -0.158 4.158 21 C -0.197 4.197 22 C 0.315 3.685 23 O -0.411 6.411 24 N -0.364 5.364 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.234 0.766 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -12.893 2.068 11.003 17.076 hybrid contribution -0.230 1.102 -1.224 1.663 sum -13.124 3.170 9.780 16.671 Atomic orbital electron populations 1.22366 1.00159 0.98896 1.01064 1.20850 0.91675 0.87393 0.98744 1.43738 1.76069 1.08182 1.02475 1.18940 1.04721 1.21362 0.94215 0.92352 1.25190 0.94189 1.01277 0.98038 1.69988 1.03152 1.37304 1.42344 0.86490 0.76919 0.82358 0.81707 1.20949 1.21593 1.20694 1.20791 0.94418 0.96656 0.85787 1.22546 1.02451 0.99896 0.93792 1.21524 0.86964 0.96160 0.95720 1.46187 1.14750 1.53385 1.22823 1.20939 0.90305 0.79770 0.81474 1.90751 1.29941 1.60373 1.59493 1.21608 0.94016 0.90963 0.93247 0.86907 1.22589 0.99518 0.99757 0.93908 1.22361 1.03065 0.96043 0.98272 1.20804 0.76693 0.88249 0.82748 1.90757 1.52946 1.63217 1.34131 1.45886 1.66106 1.18016 1.06377 0.93836 0.93269 0.94623 0.93887 0.94845 0.93417 0.88773 0.95681 0.92977 0.91666 0.91461 0.91883 0.76606 0.88508 0.88469 0.87580 0.87363 0.74679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.21 37.16 0.38 -2.40 16 2 C 0.14 2.81 6.44 -4.04 -0.03 2.79 16 3 N -0.58 -13.70 2.43 -173.24 -0.42 -14.12 16 4 C -0.26 -6.84 9.45 -15.06 -0.14 -6.98 16 5 H 0.06 1.52 7.92 -52.49 -0.42 1.11 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.28 16 7 N -0.89 -24.75 11.47 55.49 0.64 -24.11 16 8 Si 0.90 20.82 29.60 -169.99 -5.03 15.78 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.15 3.25 5.33 -4.04 -0.02 3.23 16 13 C -0.15 -2.48 5.65 -26.73 -0.15 -2.63 16 14 C 0.12 1.82 5.67 -4.04 -0.02 1.79 16 15 N -0.72 -8.30 5.56 -60.29 -0.33 -8.63 16 16 C 0.49 6.00 7.00 -10.98 -0.08 5.92 16 17 O -0.53 -9.04 16.58 5.56 0.09 -8.95 16 18 C 0.11 0.90 3.92 -68.16 -0.27 0.63 16 19 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 20 C -0.12 -0.70 6.69 -25.10 -0.17 -0.87 16 21 C -0.16 -1.29 6.85 -26.75 -0.18 -1.48 16 22 C 0.53 6.39 8.43 -10.86 -0.09 6.30 16 23 O -0.53 -8.68 18.03 5.56 0.10 -8.58 16 24 N -0.71 -7.18 5.47 -53.88 -0.29 -7.47 16 25 H 0.04 0.70 6.64 -51.93 -0.34 0.35 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 29 H 0.03 0.63 7.83 -51.93 -0.41 0.22 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.09 2.36 5.52 -51.93 -0.29 2.07 16 32 H 0.02 0.52 7.86 -51.93 -0.41 0.11 16 33 H 0.05 0.81 6.64 -51.93 -0.34 0.47 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.40 3.41 8.47 -40.82 -0.35 3.07 16 38 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.10 0.51 7.89 -51.93 -0.41 0.10 16 40 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.41 3.90 8.96 -40.82 -0.37 3.53 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -33.72 348.48 -7.55 -41.27 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.69 Total: 2.99 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -0.86 Total: 6.59 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.41 Total: -54.34 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.19 Total: -17.54 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.72 -7.55 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490317524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.155 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds