Wall clock time and date at job start Tue Mar 31 2020 02:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47531 * 2 1 4 4 C 1.36941 * 119.99954 * 275.30949 * 3 2 1 5 5 H 1.08001 * 119.99861 * 37.58522 * 4 3 2 6 6 C 1.38812 * 119.99923 * 217.57595 * 4 3 2 7 7 N 1.31617 * 119.99834 * 21.42764 * 6 4 3 8 8 Si 1.86800 * 119.99807 * 201.42673 * 6 4 3 9 9 H 1.48503 * 109.47336 * 60.00442 * 8 6 4 10 10 H 1.48504 * 109.47154 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47274 * 299.99878 * 8 6 4 12 12 C 1.46502 * 120.00038 * 95.30988 * 3 2 1 13 13 C 1.52992 * 109.47147 * 270.00336 * 12 3 2 14 14 C 1.53003 * 109.47286 * 179.97438 * 13 12 3 15 15 N 1.46498 * 109.47422 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99805 * 180.02562 * 15 14 13 17 17 O 1.21281 * 120.00226 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99395 * 180.02562 * 16 15 14 19 19 H 1.09000 * 110.21644 * 320.46734 * 18 16 15 20 20 C 1.54480 * 110.32151 * 82.45443 * 18 16 15 21 21 C 1.54624 * 101.76362 * 93.61875 * 20 18 16 22 22 C 1.51276 * 104.19943 * 24.79752 * 21 20 18 23 23 O 1.21282 * 124.94579 * 163.76421 * 22 21 20 24 24 N 1.34417 * 110.11516 * 343.74539 * 22 21 20 25 25 H 1.09003 * 109.46672 * 300.00093 * 1 2 3 26 26 H 1.09002 * 109.46687 * 59.99446 * 1 2 3 27 27 H 1.09001 * 109.47544 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46672 * 239.99907 * 2 1 3 29 29 H 1.08997 * 109.47384 * 120.00428 * 2 1 3 30 30 H 0.97002 * 119.99628 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47023 * 149.99947 * 12 3 2 32 32 H 1.09005 * 109.46709 * 30.00258 * 12 3 2 33 33 H 1.08998 * 109.47477 * 59.99889 * 13 12 3 34 34 H 1.09005 * 109.47252 * 299.99589 * 13 12 3 35 35 H 1.08998 * 109.46830 * 59.99644 * 14 13 12 36 36 H 1.08996 * 109.46868 * 300.00269 * 14 13 12 37 37 H 0.97002 * 119.99643 * 359.97438 * 15 14 13 38 38 H 1.09002 * 110.96845 * 211.73481 * 20 18 16 39 39 H 1.08996 * 110.96721 * 335.50208 * 20 18 16 40 40 H 1.09001 * 110.48599 * 143.47836 * 21 20 18 41 41 H 1.09002 * 110.48984 * 266.11599 * 21 20 18 42 42 H 0.97003 * 124.34986 * 179.85185 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4106 1.9279 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7979 -0.6490 8 14 3.0996 4.2794 -2.6585 9 1 1.9630 5.1786 -2.3344 10 1 4.3625 5.0606 -2.6669 11 1 2.8847 3.6724 -3.9967 12 6 2.3734 2.0326 1.2633 13 6 1.1428 2.7382 1.8366 14 6 1.5133 3.4180 3.1563 15 7 0.3352 4.0941 3.7049 16 6 0.4251 4.7652 4.8703 17 8 1.4812 4.8089 5.4650 18 6 -0.7870 5.4602 5.4349 19 1 -1.3575 5.9320 4.6349 20 6 -1.6734 4.4542 6.2022 21 6 -1.1539 4.6163 7.6495 22 6 -0.5714 6.0120 7.6806 23 8 -0.3131 6.6347 8.6888 24 7 -0.3814 6.4616 6.4282 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.0493 3.4025 -0.7835 31 1 3.1619 2.7640 1.0860 32 1 2.7256 1.2831 1.9721 33 1 0.3543 2.0068 2.0139 34 1 0.7905 3.4876 1.1278 35 1 2.3020 4.1493 2.9793 36 1 1.8653 2.6683 3.8648 37 1 -0.5094 4.0594 3.2291 38 1 -2.7259 4.7294 6.1325 39 1 -1.5125 3.4384 5.8415 40 1 -1.9747 4.5295 8.3615 41 1 -0.3826 3.8762 7.8632 42 1 -0.0190 7.3343 6.2091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490317524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:16 Heat of formation + Delta-G solvation = -87.050897 kcal Electronic energy + Delta-G solvation = -22358.418740 eV Core-core repulsion = 18951.550809 eV Total energy + Delta-G solvation = -3406.867931 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87822 -40.09021 -38.18819 -37.26474 -36.14929 -33.79973 -32.87967 -32.23475 -30.38928 -29.18035 -26.89929 -25.28718 -23.68367 -22.51669 -22.04010 -21.68294 -21.21843 -18.70797 -18.61109 -18.46317 -17.13938 -16.94973 -16.56146 -16.32405 -15.91977 -15.71630 -15.36744 -15.00815 -14.73453 -14.60618 -14.33585 -14.12829 -14.02593 -13.59932 -13.22641 -13.15805 -12.72905 -12.69658 -12.53664 -12.44113 -12.36589 -12.22588 -12.09747 -11.91233 -11.45298 -11.38234 -11.20701 -11.03868 -10.47325 -10.13999 -10.10570 -8.52437 -7.79219 -5.43438 1.40197 1.47446 1.49456 1.53515 1.55904 2.03601 2.46804 2.53320 3.25905 3.31335 3.49237 3.68085 3.73133 3.94236 4.19000 4.24689 4.34538 4.46347 4.49050 4.58140 4.76385 4.78679 4.81220 4.92180 4.95582 5.03133 5.06808 5.08705 5.20331 5.37634 5.43859 5.50848 5.63940 5.67541 5.72083 5.87838 5.90588 6.49708 6.56039 7.11830 7.20957 7.23975 7.91441 8.43372 9.14999 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.003426 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.679956 B = 8169.928229 C = 8870.352714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.602 5.602 4 C -0.263 4.263 5 H 0.056 0.944 6 C -0.036 4.036 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.298 1.298 11 H -0.276 1.276 12 C 0.149 3.851 13 C -0.122 4.122 14 C 0.133 3.867 15 N -0.705 5.705 16 C 0.491 3.509 17 O -0.585 6.585 18 C 0.116 3.884 19 H 0.157 0.843 20 C -0.107 4.107 21 C -0.156 4.156 22 C 0.515 3.485 23 O -0.588 6.588 24 N -0.708 5.708 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.026 0.974 29 H 0.044 0.956 30 H 0.250 0.750 31 H 0.057 0.943 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.059 0.941 37 H 0.419 0.581 38 H 0.135 0.865 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.306 1.294 9.679 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.394 4.394 5 H 0.074 0.926 6 C -0.233 4.233 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.225 1.225 11 H -0.202 1.202 12 C 0.022 3.978 13 C -0.162 4.162 14 C 0.008 3.992 15 N -0.358 5.358 16 C 0.276 3.724 17 O -0.465 6.465 18 C 0.007 3.993 19 H 0.175 0.825 20 C -0.144 4.144 21 C -0.196 4.196 22 C 0.303 3.697 23 O -0.469 6.469 24 N -0.361 5.361 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.257 0.743 38 H 0.153 0.847 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.117 0.883 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.306 1.578 10.611 19.518 hybrid contribution 0.848 1.162 -1.126 1.826 sum -15.459 2.740 9.486 18.343 Atomic orbital electron populations 1.22158 0.96953 1.00793 1.01015 1.21006 0.94080 0.85661 0.98480 1.43995 1.76495 1.09568 1.02278 1.19160 1.04082 1.21203 0.94956 0.92609 1.25847 0.93998 1.03379 1.00101 1.70132 1.03779 1.38124 1.44280 0.85568 0.76527 0.79949 0.79778 1.20059 1.22455 1.20154 1.20704 0.95529 0.96038 0.85505 1.22149 1.00535 0.99641 0.93839 1.21108 0.87714 0.95437 0.94962 1.45924 1.14378 1.52685 1.22784 1.21760 0.90927 0.78906 0.80759 1.90742 1.32512 1.62261 1.60967 1.21891 0.92284 0.91037 0.94051 0.82528 1.22735 1.00817 0.99788 0.91088 1.22422 1.03357 0.92888 1.00919 1.21570 0.76135 0.89492 0.82498 1.90716 1.55318 1.64900 1.35954 1.46049 1.65136 1.18367 1.06520 0.92606 0.94490 0.91753 0.95568 0.93784 0.94120 0.92549 0.95620 0.90611 0.92763 0.94328 0.92292 0.74295 0.84675 0.87190 0.85440 0.88326 0.74739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 10.21 71.98 0.73 -3.86 16 2 C 0.13 5.18 6.44 86.38 0.56 5.74 16 3 N -0.60 -28.01 2.43 -702.01 -1.71 -29.72 16 4 C -0.26 -13.71 9.45 84.03 0.79 -12.92 16 5 H 0.06 2.89 7.92 -2.91 -0.02 2.86 16 6 C -0.04 -1.92 4.95 84.86 0.42 -1.50 16 7 N -0.92 -52.77 11.47 21.65 0.25 -52.52 16 8 Si 0.95 43.07 29.60 68.60 2.03 45.10 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 C 0.15 6.46 5.33 86.38 0.46 6.92 16 13 C -0.12 -3.94 5.65 30.59 0.17 -3.76 16 14 C 0.13 3.92 5.67 86.38 0.49 4.41 16 15 N -0.71 -14.48 5.56 -463.06 -2.57 -17.06 16 16 C 0.49 11.01 7.00 87.66 0.61 11.63 16 17 O -0.59 -19.96 16.58 -3.03 -0.05 -20.01 16 18 C 0.12 1.47 3.92 44.70 0.18 1.64 16 19 H 0.16 0.72 8.14 -2.39 -0.02 0.70 16 20 C -0.11 -0.76 6.69 31.65 0.21 -0.55 16 21 C -0.16 -2.20 6.85 30.58 0.21 -2.00 16 22 C 0.51 12.10 8.43 87.90 0.74 12.84 16 23 O -0.59 -19.59 18.03 -3.04 -0.05 -19.65 16 24 N -0.71 -13.30 5.47 -442.97 -2.42 -15.72 16 25 H 0.05 1.56 6.64 -2.39 -0.02 1.55 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.03 1.08 8.08 -2.39 -0.02 1.06 16 29 H 0.04 1.60 7.83 -2.39 -0.02 1.58 16 30 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.06 2.92 5.52 -2.39 -0.01 2.91 16 32 H 0.03 1.07 7.86 -2.38 -0.02 1.05 16 33 H 0.08 2.11 6.64 -2.39 -0.02 2.10 16 34 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.42 5.44 8.47 -92.71 -0.79 4.65 16 38 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.11 0.61 7.89 -2.39 -0.02 0.59 16 40 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.41 7.50 8.96 -92.71 -0.83 6.67 16 Total: -1.00 -77.45 348.48 0.47 -76.98 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.58 Total: 14.01 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 5.58 Total: 18.59 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -6.45 Total: -115.01 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.11 Total: -39.66 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -77.45 0.47 -76.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490317524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.069 kcal (2) G-P(sol) polarization free energy of solvation -77.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds