Wall clock time and date at job start Tue Mar 31 2020 02:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 119.99990 * 2 1 4 4 N 1.34781 * 119.99604 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99453 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47765 * 34.99721 * 5 4 2 7 7 C 1.53003 * 109.47153 * 274.99944 * 5 4 2 8 8 C 1.50703 * 109.47051 * 155.00026 * 5 4 2 9 9 O 1.21284 * 119.99825 * 359.97438 * 8 5 4 10 10 N 1.34772 * 119.99876 * 179.97438 * 8 5 4 11 11 C 1.46505 * 119.99868 * 179.97438 * 10 8 5 12 12 H 1.09002 * 109.49502 * 325.06812 * 11 10 8 13 13 C 1.53036 * 109.49593 * 205.00246 * 11 10 8 14 14 C 1.53045 * 109.53497 * 178.65114 * 13 11 10 15 15 C 1.53198 * 109.31342 * 61.36427 * 14 13 11 16 16 N 1.46925 * 108.77376 * 305.36486 * 15 14 13 17 17 C 1.36931 * 120.62846 * 233.58067 * 16 15 14 18 18 H 1.08008 * 119.99843 * 152.40033 * 17 16 15 19 19 C 1.38812 * 120.00461 * 332.40196 * 17 16 15 20 20 N 1.31624 * 119.99771 * 334.91471 * 19 17 16 21 21 Si 1.86796 * 120.00026 * 154.90837 * 19 17 16 22 22 H 1.48503 * 109.47037 * 90.00433 * 21 19 17 23 23 H 1.48498 * 109.47658 * 330.00491 * 21 19 17 24 24 H 1.48500 * 109.47270 * 210.00244 * 21 19 17 25 25 C 1.46931 * 118.73724 * 53.86046 * 16 15 14 26 26 H 1.08997 * 109.47421 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47291 * 300.00315 * 1 2 3 28 28 H 1.09003 * 109.46684 * 60.00346 * 1 2 3 29 29 H 0.96996 * 120.00231 * 0.02562 * 4 2 1 30 30 H 1.08996 * 109.47268 * 59.99895 * 7 5 4 31 31 H 1.08993 * 109.47301 * 180.02562 * 7 5 4 32 32 H 1.09003 * 109.46885 * 300.00235 * 7 5 4 33 33 H 0.97003 * 120.00111 * 0.02562 * 10 8 5 34 34 H 1.08996 * 109.46347 * 58.63279 * 13 11 10 35 35 H 1.08999 * 109.46503 * 298.67047 * 13 11 10 36 36 H 1.08998 * 109.50167 * 301.41524 * 14 13 11 37 37 H 1.09002 * 109.52418 * 181.32924 * 14 13 11 38 38 H 1.08999 * 109.58512 * 185.57589 * 15 14 13 39 39 H 1.09004 * 109.58311 * 65.14992 * 15 14 13 40 40 H 0.96996 * 120.00175 * 354.25433 * 20 19 17 41 41 H 1.09000 * 109.58814 * 65.92708 * 25 16 15 42 42 H 1.09000 * 109.58530 * 186.34896 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1672 0.0011 6 1 4.0090 -0.3253 0.5904 7 6 4.1564 -1.0418 -1.4358 8 6 4.1480 -2.4548 0.6020 9 8 3.3597 -3.2900 0.9919 10 7 5.4730 -2.6782 0.7062 11 6 5.9611 -3.9297 1.2909 12 1 5.2881 -4.2455 2.0881 13 6 7.3641 -3.7132 1.8626 14 6 7.8614 -5.0110 2.5035 15 6 7.9381 -6.1066 1.4354 16 7 6.6281 -6.2206 0.7800 17 6 5.9898 -7.4295 0.7022 18 1 4.9118 -7.4685 0.6479 19 6 6.7282 -8.6050 0.6931 20 7 7.9746 -8.5959 0.2703 21 14 5.9529 -10.1995 1.2810 22 1 5.3076 -10.8883 0.1346 23 1 4.9320 -9.9010 2.3174 24 1 7.0026 -11.0769 1.8585 25 6 6.0189 -5.0139 0.2042 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.6958 -2.0073 0.0005 30 1 3.7932 -0.1106 -1.8705 31 1 5.2463 -1.0423 -1.4354 32 1 3.7933 -1.8838 -2.0252 33 1 6.1034 -2.0100 0.3947 34 1 7.3320 -2.9256 2.6153 35 1 8.0421 -3.4213 1.0606 36 1 7.1706 -5.3168 3.2892 37 1 8.8509 -4.8502 2.9313 38 1 8.1962 -7.0563 1.9040 39 1 8.6949 -5.8438 0.6962 40 1 8.3511 -7.7881 -0.1124 41 1 6.6223 -4.6639 -0.6334 42 1 5.0102 -5.2425 -0.1399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490426349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:36 Heat of formation + Delta-G solvation = -64.386660 kcal Electronic energy + Delta-G solvation = -22921.184708 eV Core-core repulsion = 19515.299572 eV Total energy + Delta-G solvation = -3405.885136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48670 -39.28450 -37.61291 -35.11447 -34.62678 -32.75056 -31.63876 -30.45031 -29.30820 -28.39504 -25.14612 -24.67820 -22.43157 -21.94242 -20.71838 -20.22384 -19.47014 -17.80707 -17.44145 -16.86610 -16.07794 -15.60107 -15.31784 -15.00571 -14.41447 -14.18755 -13.96668 -13.70784 -13.60837 -13.41835 -13.09078 -12.86699 -12.71823 -12.53602 -12.36922 -12.30167 -12.06442 -11.79803 -11.23553 -10.76935 -10.74335 -10.40743 -10.18091 -10.15124 -10.09444 -10.01482 -9.77406 -9.38226 -9.32609 -9.00504 -8.32922 -6.91175 -6.08522 -3.24617 2.37907 2.59439 2.76768 3.36334 3.50808 3.54914 3.70654 4.45911 4.59826 4.66215 4.83093 4.91878 4.95309 5.13785 5.14686 5.27551 5.31570 5.35004 5.50267 5.52344 5.55974 5.59163 5.88389 5.89082 5.97693 6.07482 6.13357 6.32825 6.40176 6.49228 6.50733 6.64714 6.80682 7.02818 7.14575 7.28904 7.53091 7.97868 8.01356 8.21530 8.56610 9.09087 9.83162 10.25226 11.20188 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024678 B = 0.003750 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.348660 B = 7464.891912 C = 8129.436578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.514 3.486 3 O -0.553 6.553 4 N -0.711 5.711 5 C 0.123 3.877 6 H 0.112 0.888 7 C -0.159 4.159 8 C 0.508 3.492 9 O -0.533 6.533 10 N -0.716 5.716 11 C 0.125 3.875 12 H 0.088 0.912 13 C -0.115 4.115 14 C -0.134 4.134 15 C 0.146 3.854 16 N -0.595 5.595 17 C -0.349 4.349 18 H 0.057 0.943 19 C -0.023 4.023 20 N -0.917 5.917 21 Si 1.066 2.934 22 H -0.294 1.294 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.145 3.855 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.412 0.588 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.397 0.603 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.018 0.982 40 H 0.268 0.732 41 H 0.016 0.984 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.698 16.199 -0.407 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.302 3.698 3 O -0.431 6.431 4 N -0.366 5.366 5 C 0.014 3.986 6 H 0.129 0.871 7 C -0.217 4.217 8 C 0.292 3.708 9 O -0.409 6.409 10 N -0.366 5.366 11 C 0.020 3.980 12 H 0.106 0.894 13 C -0.154 4.154 14 C -0.174 4.174 15 C 0.021 3.979 16 N -0.319 5.319 17 C -0.478 4.478 18 H 0.075 0.925 19 C -0.225 4.225 20 N -0.557 5.557 21 Si 0.895 3.105 22 H -0.221 1.221 23 H -0.218 1.218 24 H -0.212 1.212 25 C 0.018 3.982 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.249 0.751 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.036 0.964 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.558 14.673 0.193 16.506 hybrid contribution -0.209 1.588 -0.524 1.685 sum -7.766 16.261 -0.331 18.024 Atomic orbital electron populations 1.21834 0.91289 1.04547 1.05276 1.20839 0.90749 0.83145 0.75109 1.90712 1.70749 1.31401 1.50250 1.45942 1.05896 1.09808 1.74918 1.20781 0.82216 0.97108 0.98505 0.87057 1.22121 1.01747 1.03436 0.94414 1.20490 0.83171 0.88102 0.79029 1.90734 1.55092 1.46452 1.48612 1.46069 1.06309 1.21201 1.63053 1.21864 0.95204 0.83106 0.97797 0.89423 1.21678 0.95405 0.98529 0.99753 1.22059 0.99905 0.95545 0.99856 1.21021 0.87196 0.97491 0.92235 1.44077 1.19972 1.04082 1.63729 1.20008 0.91774 0.84096 1.51890 0.92531 1.25854 0.97051 1.00796 0.98804 1.70765 1.16135 1.30965 1.37816 0.83536 0.74999 0.75528 0.76408 1.22139 1.21818 1.21154 1.21251 0.97676 0.87066 0.92226 0.90296 0.88627 0.88660 0.75078 0.90933 0.90880 0.91527 0.76934 0.92732 0.92146 0.92039 0.92418 0.89969 0.96434 0.92075 0.96603 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.39 36.01 0.37 -0.77 16 2 C 0.51 5.60 7.90 -10.98 -0.09 5.51 16 3 O -0.55 -7.99 16.76 5.56 0.09 -7.90 16 4 N -0.71 -7.72 4.95 -54.93 -0.27 -7.99 16 5 C 0.12 1.38 2.98 -69.08 -0.21 1.18 16 6 H 0.11 1.24 7.58 -51.93 -0.39 0.85 16 7 C -0.16 -1.52 9.38 37.16 0.35 -1.18 16 8 C 0.51 7.19 7.19 -10.99 -0.08 7.11 16 9 O -0.53 -9.62 15.50 5.55 0.09 -9.54 16 10 N -0.72 -9.57 4.97 -53.47 -0.27 -9.83 16 11 C 0.13 2.16 2.62 -67.59 -0.18 1.98 16 12 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 13 C -0.12 -1.77 5.35 -26.69 -0.14 -1.91 16 14 C -0.13 -2.40 6.08 -26.61 -0.16 -2.56 16 15 C 0.15 3.33 4.69 -3.71 -0.02 3.31 16 16 N -0.59 -14.85 2.85 -172.05 -0.49 -15.34 16 17 C -0.35 -9.85 9.49 -15.06 -0.14 -9.99 16 18 H 0.06 1.64 7.95 -52.48 -0.42 1.22 16 19 C -0.02 -0.66 4.68 -17.43 -0.08 -0.74 16 20 N -0.92 -27.24 12.40 55.49 0.69 -26.56 16 21 Si 1.07 25.41 29.99 -169.99 -5.10 20.31 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.15 3.08 6.12 -3.48 -0.02 3.06 16 26 H 0.08 0.41 7.91 -51.93 -0.41 -0.01 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.41 4.28 7.63 -40.82 -0.31 3.97 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.59 7.56 -51.93 -0.39 0.19 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 4.03 8.02 -40.82 -0.33 3.70 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 2.11 6.29 -51.93 -0.33 1.78 16 39 H 0.02 0.40 7.87 -51.93 -0.41 -0.01 16 40 H 0.27 8.00 6.72 -40.82 -0.27 7.73 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -34.25 341.95 -7.17 -41.42 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.67 Total: 5.28 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.39 Total: 4.99 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.34 Total: -59.72 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.18 Total: -17.43 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.10 Total: 20.31 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.25 -7.17 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490426349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.967 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds