Wall clock time and date at job start Tue Mar 31 2020 02:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00102 * 2 1 4 4 N 1.34775 * 120.00021 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99798 * 179.97438 * 4 2 1 6 6 H 1.08989 * 109.47267 * 325.00315 * 5 4 2 7 7 C 1.53009 * 109.46885 * 85.00752 * 5 4 2 8 8 C 1.50705 * 109.46972 * 205.00007 * 5 4 2 9 9 O 1.21281 * 119.99998 * 0.02562 * 8 5 4 10 10 N 1.34779 * 119.99607 * 180.02562 * 8 5 4 11 11 C 1.46500 * 119.99623 * 180.02562 * 10 8 5 12 12 H 1.08995 * 109.52399 * 35.07526 * 11 10 8 13 13 C 1.53040 * 109.49782 * 155.16028 * 11 10 8 14 14 C 1.53037 * 109.53836 * 181.31219 * 13 11 10 15 15 C 1.53626 * 109.24443 * 298.50940 * 14 13 11 16 16 N 1.46929 * 108.53840 * 54.85720 * 15 14 13 17 17 C 1.36932 * 120.63037 * 126.37544 * 16 15 14 18 18 H 1.08007 * 120.00092 * 332.11077 * 17 16 15 19 19 C 1.38811 * 120.00472 * 152.12045 * 17 16 15 20 20 N 1.31625 * 119.99390 * 334.89929 * 19 17 16 21 21 Si 1.86800 * 120.00337 * 154.90410 * 19 17 16 22 22 H 1.48500 * 109.47103 * 89.99955 * 21 19 17 23 23 H 1.48500 * 109.47095 * 329.99535 * 21 19 17 24 24 H 1.48496 * 109.47025 * 209.99704 * 21 19 17 25 25 C 1.46924 * 118.74071 * 306.09024 * 16 15 14 26 26 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47323 * 300.00094 * 1 2 3 28 28 H 1.08998 * 109.46848 * 60.00344 * 1 2 3 29 29 H 0.97003 * 119.99814 * 0.02562 * 4 2 1 30 30 H 1.08993 * 109.47551 * 59.99211 * 7 5 4 31 31 H 1.08999 * 109.47179 * 180.02562 * 7 5 4 32 32 H 1.09005 * 109.46562 * 299.99715 * 7 5 4 33 33 H 0.96995 * 120.00396 * 359.97438 * 10 8 5 34 34 H 1.08998 * 109.45897 * 301.33176 * 13 11 10 35 35 H 1.09000 * 109.45887 * 61.30435 * 13 11 10 36 36 H 1.09002 * 109.49767 * 58.58211 * 14 13 11 37 37 H 1.09004 * 109.50053 * 178.68101 * 14 13 11 38 38 H 1.09000 * 109.73932 * 295.12024 * 15 14 13 39 39 H 1.08994 * 109.66349 * 174.54773 * 15 14 13 40 40 H 0.96998 * 120.00035 * 354.26088 * 20 19 17 41 41 H 1.08994 * 109.59134 * 173.65279 * 25 16 15 42 42 H 1.09001 * 109.58640 * 293.93821 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0090 -0.3258 -0.5901 7 6 4.1564 -1.0406 1.4368 8 6 4.1480 -2.4553 -0.5999 9 8 3.3598 -3.2908 -0.9890 10 7 5.4731 -2.6787 -0.7038 11 6 5.9612 -3.9306 -1.2874 12 1 5.2900 -4.2463 -2.0860 13 6 7.3659 -3.7158 -1.8557 14 6 7.8636 -5.0143 -2.4946 15 6 7.9394 -6.1103 -1.4209 16 7 6.6250 -6.2218 -0.7736 17 6 5.9855 -7.4302 -0.6967 18 1 6.1686 -8.1867 -1.4455 19 6 5.1016 -7.6829 0.3434 20 7 5.2234 -7.0346 1.4825 21 14 3.7396 -8.9428 0.1266 22 1 4.2300 -10.2794 0.5489 23 1 3.3340 -8.9925 -1.3011 24 1 2.5722 -8.5579 0.9597 25 6 6.0128 -5.0134 -0.2049 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6959 -2.0072 0.0005 30 1 3.7933 -1.8820 2.0269 31 1 5.2464 -1.0401 1.4364 32 1 3.7932 -0.1089 1.8706 33 1 6.1035 -2.0103 -0.3929 34 1 7.3364 -2.9285 -2.6089 35 1 8.0421 -3.4242 -1.0520 36 1 7.1745 -5.3198 -3.2819 37 1 8.8545 -4.8541 -2.9198 38 1 8.6915 -5.8462 -0.6775 39 1 8.1998 -7.0614 -1.8853 40 1 5.9785 -6.4427 1.6253 41 1 5.0018 -5.2404 0.1333 42 1 6.6097 -4.6630 0.6372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490426350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:39 Heat of formation + Delta-G solvation = -63.789206 kcal Electronic energy + Delta-G solvation = -23262.220991 eV Core-core repulsion = 19856.361763 eV Total energy + Delta-G solvation = -3405.859228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.33900 -39.16156 -37.55554 -34.96159 -34.41264 -32.97201 -31.63753 -29.90935 -29.31360 -28.48538 -25.15218 -24.56965 -22.26341 -21.99777 -20.59315 -20.06668 -19.45234 -17.69545 -17.43033 -16.74103 -15.91847 -15.49452 -15.19447 -14.87922 -14.44636 -14.15475 -13.87473 -13.65826 -13.48701 -13.39745 -12.96499 -12.75401 -12.62360 -12.39727 -12.29252 -12.18223 -12.00502 -11.64695 -11.17114 -10.94223 -10.66861 -10.39624 -10.29717 -10.07166 -10.04223 -9.90937 -9.64194 -9.40206 -9.19251 -8.75349 -8.35184 -6.89622 -6.07188 -3.23621 2.49977 2.76714 2.91713 3.49257 3.52585 3.58154 3.72059 4.57866 4.64369 4.77734 4.98144 5.05237 5.07882 5.19495 5.25112 5.29732 5.34921 5.47393 5.51852 5.56585 5.63791 5.72310 5.89986 6.00357 6.05910 6.12470 6.25424 6.28483 6.30753 6.51488 6.63128 6.70307 6.77027 6.97859 7.22681 7.42448 7.68279 8.01339 8.10178 8.38793 8.57280 9.09853 9.84012 10.26703 11.21025 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.005027 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.845824 B = 5568.465218 C = 6735.587834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.514 3.486 3 O -0.555 6.555 4 N -0.710 5.710 5 C 0.124 3.876 6 H 0.110 0.890 7 C -0.159 4.159 8 C 0.507 3.493 9 O -0.528 6.528 10 N -0.716 5.716 11 C 0.123 3.877 12 H 0.086 0.914 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.144 3.856 16 N -0.595 5.595 17 C -0.353 4.353 18 H 0.057 0.943 19 C -0.019 4.019 20 N -0.913 5.913 21 Si 1.065 2.935 22 H -0.294 1.294 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.147 3.853 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.413 0.587 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.395 0.605 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.017 0.983 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.086 0.914 42 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 12.952 -3.060 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.302 3.698 3 O -0.434 6.434 4 N -0.364 5.364 5 C 0.015 3.985 6 H 0.128 0.872 7 C -0.217 4.217 8 C 0.291 3.709 9 O -0.404 6.404 10 N -0.367 5.367 11 C 0.018 3.982 12 H 0.104 0.896 13 C -0.154 4.154 14 C -0.171 4.171 15 C 0.018 3.982 16 N -0.319 5.319 17 C -0.482 4.482 18 H 0.075 0.925 19 C -0.222 4.222 20 N -0.552 5.552 21 Si 0.894 3.106 22 H -0.222 1.222 23 H -0.218 1.218 24 H -0.211 1.211 25 C 0.020 3.980 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.250 0.750 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.229 0.771 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -3.722 12.342 -2.628 13.156 hybrid contribution 1.568 0.573 -0.610 1.778 sum -2.153 12.915 -3.239 13.488 Atomic orbital electron populations 1.21832 0.91362 1.04581 1.05182 1.20823 0.90730 0.83153 0.75133 1.90701 1.70771 1.31428 1.50467 1.45954 1.05968 1.09832 1.74684 1.20775 0.82170 0.97050 0.98520 0.87193 1.22121 1.01674 1.03462 0.94475 1.20468 0.83187 0.88100 0.79114 1.90747 1.55020 1.46237 1.48355 1.46032 1.06299 1.21030 1.63321 1.21868 0.94642 0.83476 0.98254 0.89637 1.21677 0.95879 0.98154 0.99728 1.22069 0.99818 0.95681 0.99500 1.21048 0.88008 0.96255 0.92933 1.44055 1.15735 1.04147 1.67967 1.19955 1.26285 0.93026 1.08903 0.92536 1.25837 1.02626 1.02334 0.91365 1.70765 1.32735 1.29855 1.21884 0.83557 0.76685 0.75113 0.75219 1.22169 1.21802 1.21135 1.21256 0.99701 0.85185 0.91885 0.90249 0.88692 0.88700 0.74977 0.91296 0.90969 0.91046 0.77135 0.92744 0.92166 0.91984 0.92457 0.96486 0.92417 0.92186 0.89549 0.96654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.39 36.01 0.37 -0.99 16 2 C 0.51 6.32 7.90 -10.98 -0.09 6.23 16 3 O -0.56 -8.69 16.76 5.56 0.09 -8.60 16 4 N -0.71 -8.97 4.95 -54.93 -0.27 -9.24 16 5 C 0.12 1.61 2.98 -69.08 -0.21 1.41 16 6 H 0.11 1.38 7.58 -51.94 -0.39 0.99 16 7 C -0.16 -1.85 9.38 37.16 0.35 -1.50 16 8 C 0.51 8.23 7.19 -10.98 -0.08 8.15 16 9 O -0.53 -10.78 15.50 5.56 0.09 -10.69 16 10 N -0.72 -10.82 4.97 -53.69 -0.27 -11.09 16 11 C 0.12 2.28 2.60 -67.81 -0.18 2.10 16 12 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 13 C -0.12 -1.79 5.35 -26.69 -0.14 -1.93 16 14 C -0.13 -2.17 6.10 -26.39 -0.16 -2.33 16 15 C 0.14 2.94 6.54 -3.48 -0.02 2.92 16 16 N -0.60 -14.86 2.85 -172.05 -0.49 -15.35 16 17 C -0.35 -9.95 9.49 -15.06 -0.14 -10.10 16 18 H 0.06 1.60 7.95 -52.48 -0.42 1.18 16 19 C -0.02 -0.56 4.68 -17.43 -0.08 -0.64 16 20 N -0.91 -27.53 12.40 55.49 0.69 -26.84 16 21 Si 1.06 25.92 29.99 -169.99 -5.10 20.82 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.15 3.42 4.27 -3.71 -0.02 3.40 16 26 H 0.08 0.52 7.91 -51.93 -0.41 0.11 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.41 5.15 7.63 -40.82 -0.31 4.84 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.40 4.60 8.02 -40.82 -0.33 4.27 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.27 8.10 6.71 -40.82 -0.27 7.82 16 41 H 0.09 2.38 6.29 -51.93 -0.33 2.05 16 42 H 0.02 0.36 7.86 -51.93 -0.41 -0.05 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -34.70 341.94 -7.17 -41.87 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.67 Total: 7.24 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.39 Total: 6.73 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -0.34 Total: -62.52 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.18 Total: -19.29 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.10 Total: 20.82 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.70 -7.17 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490426350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.921 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds