Wall clock time and date at job start Tue Mar 31 2020 02:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00102 * 2 1 4 4 N 1.34775 * 120.00021 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99798 * 179.97438 * 4 2 1 6 6 H 1.08989 * 109.47267 * 325.00315 * 5 4 2 7 7 C 1.53009 * 109.46885 * 85.00752 * 5 4 2 8 8 C 1.50705 * 109.46972 * 205.00007 * 5 4 2 9 9 O 1.21281 * 119.99998 * 0.02562 * 8 5 4 10 10 N 1.34779 * 119.99607 * 180.02562 * 8 5 4 11 11 C 1.46500 * 119.99623 * 180.02562 * 10 8 5 12 12 H 1.08995 * 109.52399 * 35.07526 * 11 10 8 13 13 C 1.53040 * 109.49782 * 155.16028 * 11 10 8 14 14 C 1.53037 * 109.53836 * 181.31219 * 13 11 10 15 15 C 1.53626 * 109.24443 * 298.50940 * 14 13 11 16 16 N 1.46929 * 108.53840 * 54.85720 * 15 14 13 17 17 C 1.36932 * 120.63037 * 126.37544 * 16 15 14 18 18 H 1.08007 * 120.00092 * 332.11077 * 17 16 15 19 19 C 1.38811 * 120.00472 * 152.12045 * 17 16 15 20 20 N 1.31625 * 119.99390 * 334.89929 * 19 17 16 21 21 Si 1.86800 * 120.00337 * 154.90410 * 19 17 16 22 22 H 1.48500 * 109.47103 * 89.99955 * 21 19 17 23 23 H 1.48500 * 109.47095 * 329.99535 * 21 19 17 24 24 H 1.48496 * 109.47025 * 209.99704 * 21 19 17 25 25 C 1.46924 * 118.74071 * 306.09024 * 16 15 14 26 26 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47323 * 300.00094 * 1 2 3 28 28 H 1.08998 * 109.46848 * 60.00344 * 1 2 3 29 29 H 0.97003 * 119.99814 * 0.02562 * 4 2 1 30 30 H 1.08993 * 109.47551 * 59.99211 * 7 5 4 31 31 H 1.08999 * 109.47179 * 180.02562 * 7 5 4 32 32 H 1.09005 * 109.46562 * 299.99715 * 7 5 4 33 33 H 0.96995 * 120.00396 * 359.97438 * 10 8 5 34 34 H 1.08998 * 109.45897 * 301.33176 * 13 11 10 35 35 H 1.09000 * 109.45887 * 61.30435 * 13 11 10 36 36 H 1.09002 * 109.49767 * 58.58211 * 14 13 11 37 37 H 1.09004 * 109.50053 * 178.68101 * 14 13 11 38 38 H 1.09000 * 109.73932 * 295.12024 * 15 14 13 39 39 H 1.08994 * 109.66349 * 174.54773 * 15 14 13 40 40 H 0.96998 * 120.00035 * 354.26088 * 20 19 17 41 41 H 1.08994 * 109.59134 * 173.65279 * 25 16 15 42 42 H 1.09001 * 109.58640 * 293.93821 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0090 -0.3258 -0.5901 7 6 4.1564 -1.0406 1.4368 8 6 4.1480 -2.4553 -0.5999 9 8 3.3598 -3.2908 -0.9890 10 7 5.4731 -2.6787 -0.7038 11 6 5.9612 -3.9306 -1.2874 12 1 5.2900 -4.2463 -2.0860 13 6 7.3659 -3.7158 -1.8557 14 6 7.8636 -5.0143 -2.4946 15 6 7.9394 -6.1103 -1.4209 16 7 6.6250 -6.2218 -0.7736 17 6 5.9855 -7.4302 -0.6967 18 1 6.1686 -8.1867 -1.4455 19 6 5.1016 -7.6829 0.3434 20 7 5.2234 -7.0346 1.4825 21 14 3.7396 -8.9428 0.1266 22 1 4.2300 -10.2794 0.5489 23 1 3.3340 -8.9925 -1.3011 24 1 2.5722 -8.5579 0.9597 25 6 6.0128 -5.0134 -0.2049 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6959 -2.0072 0.0005 30 1 3.7933 -1.8820 2.0269 31 1 5.2464 -1.0401 1.4364 32 1 3.7932 -0.1089 1.8706 33 1 6.1035 -2.0103 -0.3929 34 1 7.3364 -2.9285 -2.6089 35 1 8.0421 -3.4242 -1.0520 36 1 7.1745 -5.3198 -3.2819 37 1 8.8545 -4.8541 -2.9198 38 1 8.6915 -5.8462 -0.6775 39 1 8.1998 -7.0614 -1.8853 40 1 5.9785 -6.4427 1.6253 41 1 5.0018 -5.2404 0.1333 42 1 6.6097 -4.6630 0.6372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490426350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:39 Heat of formation + Delta-G solvation = -90.134699 kcal Electronic energy + Delta-G solvation = -23263.363417 eV Core-core repulsion = 19856.361763 eV Total energy + Delta-G solvation = -3407.001654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56740 -40.37431 -39.13308 -36.15883 -36.00181 -34.66048 -32.70562 -31.70932 -30.60113 -29.56367 -27.10901 -25.73848 -23.89941 -23.58719 -21.69207 -21.37674 -20.99520 -19.43349 -18.83183 -17.89690 -17.16466 -16.76486 -16.45880 -16.22885 -16.03715 -15.82319 -15.43794 -15.17591 -14.98301 -14.61293 -14.26563 -14.06639 -13.88232 -13.57147 -13.49724 -13.27867 -13.08730 -12.98631 -12.69209 -12.57736 -12.50019 -11.98250 -11.87425 -11.84880 -11.69952 -11.29781 -11.08846 -10.95092 -10.48863 -10.29516 -10.23059 -8.94516 -8.27475 -5.42939 1.43974 1.52086 1.54327 1.62448 1.78303 1.81685 2.37768 2.62252 3.19431 3.43026 3.64795 3.81574 3.86635 3.97464 4.02831 4.06016 4.13467 4.33466 4.42463 4.46457 4.57160 4.65208 4.69456 4.71380 4.76488 4.97984 5.03405 5.05770 5.08683 5.10133 5.12225 5.19440 5.27097 5.37261 5.51907 5.81528 6.36139 6.43471 6.44649 7.02945 7.11616 7.14447 7.74911 8.18048 8.96437 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.005027 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.845824 B = 5568.465218 C = 6735.587834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.511 3.489 3 O -0.591 6.591 4 N -0.713 5.713 5 C 0.131 3.869 6 H 0.122 0.878 7 C -0.152 4.152 8 C 0.505 3.495 9 O -0.574 6.574 10 N -0.702 5.702 11 C 0.137 3.863 12 H 0.054 0.946 13 C -0.108 4.108 14 C -0.121 4.121 15 C 0.136 3.864 16 N -0.617 5.617 17 C -0.360 4.360 18 H 0.050 0.950 19 C -0.071 4.071 20 N -0.938 5.938 21 Si 1.108 2.892 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.291 1.291 25 C 0.159 3.841 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.413 0.587 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.416 0.584 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.098 0.902 38 H 0.024 0.976 39 H 0.050 0.950 40 H 0.254 0.746 41 H 0.035 0.965 42 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 14.393 -3.952 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.301 3.699 3 O -0.472 6.472 4 N -0.367 5.367 5 C 0.022 3.978 6 H 0.139 0.861 7 C -0.211 4.211 8 C 0.291 3.709 9 O -0.453 6.453 10 N -0.354 5.354 11 C 0.031 3.969 12 H 0.072 0.928 13 C -0.145 4.145 14 C -0.161 4.161 15 C 0.012 3.988 16 N -0.342 5.342 17 C -0.489 4.489 18 H 0.068 0.932 19 C -0.268 4.268 20 N -0.580 5.580 21 Si 0.933 3.067 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.218 1.218 25 C 0.032 3.968 26 H 0.113 0.887 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.250 0.750 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.254 0.746 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.116 0.884 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -3.096 13.815 -3.531 14.591 hybrid contribution 1.442 0.120 -0.349 1.489 sum -1.654 13.934 -3.880 14.559 Atomic orbital electron populations 1.21885 0.87964 1.06043 1.06430 1.21559 0.92311 0.82203 0.73824 1.90680 1.71836 1.32437 1.52210 1.46093 1.05857 1.10183 1.74576 1.20760 0.82735 0.95099 0.99181 0.86075 1.22090 1.02942 1.02963 0.93071 1.21081 0.83045 0.88630 0.78132 1.90727 1.56224 1.48063 1.50298 1.45816 1.06584 1.20280 1.62740 1.21404 0.96497 0.83436 0.95595 0.92816 1.21657 0.93296 0.98560 1.01031 1.21962 1.01907 0.94530 0.97662 1.21263 0.85925 0.97781 0.93877 1.44310 1.17709 1.03717 1.68474 1.20207 1.26360 0.94213 1.08157 0.93186 1.27073 1.04705 1.03915 0.91097 1.70871 1.32767 1.31266 1.23059 0.82966 0.74132 0.73997 0.75583 1.20235 1.20631 1.21755 1.21024 0.96467 0.86215 0.93116 0.88736 0.87228 0.87474 0.74974 0.92825 0.88963 0.90513 0.74639 0.89271 0.90295 0.93198 0.88372 0.95788 0.93127 0.93654 0.94594 0.97316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 10.39 71.24 0.74 -1.59 16 2 C 0.51 12.01 7.90 87.66 0.69 12.70 16 3 O -0.59 -17.87 16.76 -3.02 -0.05 -17.92 16 4 N -0.71 -17.66 4.95 -446.09 -2.21 -19.87 16 5 C 0.13 3.31 2.98 44.25 0.13 3.44 16 6 H 0.12 2.84 7.58 -2.39 -0.02 2.82 16 7 C -0.15 -3.37 9.38 71.99 0.68 -2.69 16 8 C 0.51 16.33 7.19 87.66 0.63 16.96 16 9 O -0.57 -24.14 15.50 -3.03 -0.05 -24.19 16 10 N -0.70 -20.44 4.97 -442.15 -2.20 -22.64 16 11 C 0.14 5.01 2.60 45.07 0.12 5.13 16 12 H 0.05 2.34 7.58 -2.39 -0.02 2.32 16 13 C -0.11 -2.96 5.35 30.62 0.16 -2.80 16 14 C -0.12 -3.68 6.10 30.82 0.19 -3.49 16 15 C 0.14 5.46 6.54 86.51 0.57 6.03 16 16 N -0.62 -31.33 2.85 -698.25 -1.99 -33.32 16 17 C -0.36 -20.79 9.49 84.03 0.80 -19.99 16 18 H 0.05 2.89 7.95 -2.91 -0.02 2.86 16 19 C -0.07 -4.19 4.68 84.86 0.40 -3.79 16 20 N -0.94 -58.53 12.40 21.65 0.27 -58.26 16 21 Si 1.11 53.37 29.99 68.60 2.06 55.42 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 25 C 0.16 7.56 4.27 86.37 0.37 7.93 16 26 H 0.09 1.06 7.91 -2.39 -0.02 1.04 16 27 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.41 10.34 7.63 -92.71 -0.71 9.63 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.64 7.56 -2.39 -0.02 1.62 16 32 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.42 8.62 8.02 -92.71 -0.74 7.87 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 39 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 40 H 0.25 16.01 6.71 -92.71 -0.62 15.38 16 41 H 0.04 2.06 6.29 -2.39 -0.02 2.05 16 42 H 0.01 0.43 7.86 -2.39 -0.02 0.41 16 Total: -1.00 -79.09 341.94 1.02 -78.07 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -0.28 Total: 24.87 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 5.47 Total: 17.83 kcal Atomic # 7 Polarization: -127.96 SS G_CDS: -6.13 Total: -134.08 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.10 Total: -42.11 kcal Atomic # 14 Polarization: 53.37 SS G_CDS: 2.06 Total: 55.42 kcal Total: -79.09 1.02 -78.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490426350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.067 kcal (2) G-P(sol) polarization free energy of solvation -79.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds