Wall clock time and date at job start Tue Mar 31 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21274 * 120.00034 * 2 1 4 4 N 1.34775 * 119.99541 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99693 * 179.97438 * 4 2 1 6 6 H 1.08996 * 109.46660 * 35.00912 * 5 4 2 7 7 C 1.52997 * 109.47289 * 275.00198 * 5 4 2 8 8 C 1.50699 * 109.46928 * 155.00268 * 5 4 2 9 9 O 1.21282 * 120.00041 * 0.02562 * 8 5 4 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 5 4 11 11 C 1.46500 * 120.00169 * 180.02562 * 10 8 5 12 12 C 1.52996 * 109.47364 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.47481 * 295.00383 * 12 11 10 14 14 N 1.46506 * 109.46784 * 55.00039 * 12 11 10 15 15 C 1.36932 * 120.00078 * 204.99617 * 14 12 11 16 16 H 1.08004 * 119.99949 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00118 * 179.97438 * 15 14 12 18 18 N 1.31620 * 119.99722 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47190 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47018 * 120.00186 * 19 17 15 22 22 H 1.48498 * 109.47143 * 240.00009 * 19 17 15 23 23 C 1.53002 * 109.47314 * 174.99696 * 12 11 10 24 24 C 1.52993 * 117.50114 * 248.75102 * 23 12 11 25 25 C 1.52995 * 117.49927 * 180.08772 * 23 12 11 26 26 H 1.08999 * 109.46969 * 240.00259 * 1 2 3 27 27 H 1.08999 * 109.46712 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46644 * 119.99732 * 1 2 3 29 29 H 0.97000 * 120.00190 * 0.02562 * 4 2 1 30 30 H 1.09002 * 109.47153 * 179.97438 * 7 5 4 31 31 H 1.09001 * 109.46832 * 60.00146 * 7 5 4 32 32 H 1.09004 * 109.47261 * 300.00128 * 7 5 4 33 33 H 0.96996 * 119.99844 * 359.97438 * 10 8 5 34 34 H 1.09004 * 109.46923 * 300.00119 * 11 10 8 35 35 H 1.09004 * 109.47042 * 59.99705 * 11 10 8 36 36 H 0.97004 * 119.99499 * 25.00299 * 14 12 11 37 37 H 0.97004 * 119.99915 * 179.97438 * 18 17 15 38 38 H 1.09002 * 115.54657 * 34.42483 * 23 12 11 39 39 H 1.09007 * 117.50048 * 0.02562 * 24 23 12 40 40 H 1.09004 * 117.49984 * 145.01849 * 24 23 12 41 41 H 1.08994 * 117.50381 * 214.98118 * 25 23 12 42 42 H 1.09007 * 117.49854 * 359.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0000 6 1 4.0094 -0.3252 0.5888 7 6 4.1554 -1.0425 -1.4373 8 6 4.1484 -2.4546 0.6010 9 8 3.3604 -3.2900 0.9910 10 7 5.4735 -2.6776 0.7052 11 6 5.9620 -3.9293 1.2890 12 6 7.4920 -3.9294 1.2886 13 1 7.8551 -3.9295 0.2609 14 7 7.9805 -2.7330 1.9789 15 6 9.2220 -2.2338 1.6881 16 1 9.8409 -2.7217 0.9496 17 6 9.6846 -1.0999 2.3418 18 7 8.9302 -0.5051 3.2414 19 14 11.3779 -0.4184 1.9447 20 1 12.0203 -1.2630 0.9059 21 1 11.2460 0.9719 1.4396 22 1 12.2133 -0.4219 3.1724 23 6 8.0022 -5.1785 2.0100 24 6 8.7018 -4.9806 3.3561 25 6 9.5172 -5.3625 2.1182 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8901 29 1 1.6958 -2.0073 0.0005 30 1 5.2454 -1.0421 -1.4376 31 1 3.7919 -0.1113 -1.8720 32 1 3.7918 -1.8847 -2.0261 33 1 6.1037 -2.0097 0.3930 34 1 5.5986 -4.0189 2.3128 35 1 5.5988 -4.7712 0.6996 36 1 7.4245 -2.2947 2.6420 37 1 9.2536 0.2870 3.6985 38 1 7.3940 -6.0745 1.8857 39 1 8.7982 -3.9605 3.7281 40 1 8.5542 -5.7466 4.1175 41 1 9.9057 -6.3794 2.0656 42 1 10.1505 -4.5938 1.6751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490631241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:10 Heat of formation + Delta-G solvation = -42.436293 kcal Electronic energy + Delta-G solvation = -22698.834966 eV Core-core repulsion = 19293.901670 eV Total energy + Delta-G solvation = -3404.933296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26558 -39.02071 -37.66666 -34.99895 -34.57801 -33.32026 -31.77835 -30.71514 -29.04196 -28.01671 -24.73907 -23.55417 -22.50331 -21.53250 -20.57627 -20.12874 -19.13700 -17.85011 -17.21099 -16.69498 -15.96241 -15.60029 -15.19461 -15.01202 -14.85025 -14.57699 -13.89332 -13.80210 -13.50017 -13.21826 -12.95857 -12.85865 -12.70886 -12.40372 -12.20040 -12.02038 -11.60977 -11.33381 -11.21237 -10.92086 -10.88429 -10.55480 -10.11733 -9.99435 -9.81535 -9.69983 -9.50097 -9.24281 -9.15888 -9.02130 -8.74848 -7.11155 -5.87122 -3.17829 2.54316 2.76053 2.93029 3.37060 3.43336 3.45847 3.58880 4.46425 4.59342 4.67365 4.83737 5.02858 5.11055 5.16591 5.22944 5.31121 5.43483 5.51136 5.55668 5.64621 5.69703 5.78869 5.80635 5.92452 5.99812 6.01158 6.06983 6.30535 6.35501 6.39572 6.60251 6.67747 6.80681 6.96421 7.24427 7.44180 7.62808 7.76314 8.15374 8.29566 8.37539 9.42297 9.95193 10.31151 11.34263 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.004383 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.585818 B = 6386.220452 C = 7578.971141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.546 6.546 4 N -0.713 5.713 5 C 0.122 3.878 6 H 0.116 0.884 7 C -0.157 4.157 8 C 0.510 3.490 9 O -0.554 6.554 10 N -0.703 5.703 11 C 0.119 3.881 12 C 0.192 3.808 13 H 0.058 0.942 14 N -0.718 5.718 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.006 4.006 18 N -0.927 5.927 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.178 4.178 24 C -0.163 4.163 25 C -0.175 4.175 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.409 0.591 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.413 0.587 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.019 -5.095 -7.538 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.298 3.702 3 O -0.424 6.424 4 N -0.367 5.367 5 C 0.013 3.987 6 H 0.134 0.866 7 C -0.216 4.216 8 C 0.295 3.705 9 O -0.433 6.433 10 N -0.355 5.355 11 C -0.005 4.005 12 C 0.081 3.919 13 H 0.076 0.924 14 N -0.359 5.359 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.203 4.203 18 N -0.574 5.574 19 Si 0.733 3.267 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.200 4.200 24 C -0.200 4.200 25 C -0.212 4.212 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.246 0.754 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.221 0.779 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.952 -4.878 -7.321 14.841 hybrid contribution 0.965 0.307 0.079 1.016 sum -10.987 -4.571 -7.243 13.931 Atomic orbital electron populations 1.21897 0.91453 1.05449 1.04354 1.20820 0.90676 0.83267 0.75423 1.90742 1.70777 1.31355 1.49495 1.45816 1.05962 1.09572 1.75329 1.20778 0.81773 0.97516 0.98595 0.86583 1.22111 1.02198 1.03041 0.94254 1.20452 0.83109 0.88029 0.78943 1.90651 1.55525 1.46865 1.50239 1.45918 1.06355 1.21541 1.61670 1.21624 0.95395 0.85117 0.98408 1.19994 0.89247 0.86966 0.95694 0.92446 1.42486 1.18136 1.27877 1.47445 1.19197 0.92765 1.06992 1.18368 0.90973 1.24716 0.98234 0.98371 0.98995 1.69663 1.36767 1.22151 1.28841 0.86202 0.84231 0.78771 0.77455 1.20576 1.21885 1.21899 1.23064 0.94918 0.99800 1.02205 1.22915 1.03601 1.03484 0.90001 1.22850 0.93834 1.00718 1.03796 0.89268 0.88943 0.89421 0.75450 0.90495 0.90999 0.91992 0.75013 0.91550 0.91709 0.77934 0.93422 0.89651 0.86329 0.91292 0.91020 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.32 36.01 0.37 -0.94 16 2 C 0.51 6.34 7.90 -10.98 -0.09 6.25 16 3 O -0.55 -9.15 16.75 5.56 0.09 -9.05 16 4 N -0.71 -8.55 4.95 -54.93 -0.27 -8.82 16 5 C 0.12 1.64 2.98 -69.08 -0.21 1.44 16 6 H 0.12 1.77 7.58 -51.93 -0.39 1.37 16 7 C -0.16 -1.81 9.38 37.16 0.35 -1.47 16 8 C 0.51 7.79 7.22 -10.99 -0.08 7.71 16 9 O -0.55 -9.64 15.84 5.56 0.09 -9.55 16 10 N -0.70 -10.85 5.28 -60.29 -0.32 -11.17 16 11 C 0.12 1.90 5.21 -4.04 -0.02 1.88 16 12 C 0.19 3.37 2.86 -67.93 -0.19 3.17 16 13 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 14 N -0.72 -15.49 3.08 -53.42 -0.16 -15.65 16 15 C -0.24 -5.91 8.15 -15.06 -0.12 -6.04 16 16 H 0.07 1.74 6.91 -52.48 -0.36 1.38 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 18 N -0.93 -26.06 13.06 55.49 0.72 -25.34 16 19 Si 0.90 21.18 29.55 -169.99 -5.02 16.15 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.18 -3.00 5.70 -90.62 -0.52 -3.51 16 24 C -0.16 -2.98 9.74 -26.70 -0.26 -3.24 16 25 C -0.18 -3.04 9.87 -26.70 -0.26 -3.30 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.70 8.12 -51.93 -0.42 0.28 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.41 4.35 7.79 -40.82 -0.32 4.03 16 30 H 0.08 0.85 7.57 -51.93 -0.39 0.46 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.41 6.49 7.56 -40.82 -0.31 6.18 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.39 9.25 7.80 -40.82 -0.32 8.93 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.09 1.28 8.11 -51.93 -0.42 0.85 16 39 H 0.12 2.61 6.68 -51.93 -0.35 2.27 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.10 2.00 6.22 -51.93 -0.32 1.68 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -30.11 350.55 -7.26 -37.37 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -6.54 Total: 19.09 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.13 Total: 1.69 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -0.03 Total: -60.98 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.18 Total: -18.60 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.11 -7.26 -37.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490631241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.070 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds