Wall clock time and date at job start Tue Mar 31 2020 02:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47041 * 2 1 4 4 C 1.52993 * 109.47593 * 120.00284 * 2 1 3 5 5 N 1.46502 * 109.47511 * 175.00199 * 4 2 1 6 6 C 1.34775 * 119.99787 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00468 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99515 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46768 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.13181 * 55.52161 * 9 8 6 11 11 C 1.52927 * 109.29578 * 174.99836 * 9 8 6 12 12 C 1.53348 * 108.67100 * 171.06249 * 11 9 8 13 13 C 1.53077 * 108.41700 * 292.45922 * 12 11 9 14 14 C 1.50171 * 109.89019 * 48.90804 * 13 12 11 15 15 O 1.21283 * 118.24346 * 162.39572 * 14 13 12 16 16 N 1.33354 * 123.51221 * 342.42859 * 14 13 12 17 17 N 1.46503 * 109.46707 * 240.00444 * 2 1 3 18 18 C 1.36937 * 120.00189 * 84.99850 * 17 2 1 19 19 H 1.07998 * 119.99983 * 359.97438 * 18 17 2 20 20 C 1.38809 * 119.99838 * 179.97438 * 18 17 2 21 21 N 1.31615 * 120.00026 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00004 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47212 * 59.99988 * 22 20 18 24 24 H 1.48499 * 109.47461 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47234 * 300.00497 * 22 20 18 26 26 H 1.09006 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46912 * 299.99499 * 1 2 3 28 28 H 1.08998 * 109.47296 * 59.99931 * 1 2 3 29 29 H 1.08997 * 109.47125 * 54.99558 * 4 2 1 30 30 H 1.09008 * 109.47113 * 295.00036 * 4 2 1 31 31 H 0.96996 * 119.99771 * 359.97438 * 5 4 2 32 32 H 1.09004 * 109.46870 * 59.99651 * 8 6 5 33 33 H 1.08991 * 109.46829 * 299.99736 * 8 6 5 34 34 H 1.08996 * 109.60496 * 290.82065 * 11 9 8 35 35 H 1.08997 * 109.60247 * 51.30926 * 11 9 8 36 36 H 1.08997 * 109.67264 * 52.20642 * 12 11 9 37 37 H 1.09000 * 109.67050 * 172.73216 * 12 11 9 38 38 H 1.09003 * 109.39570 * 288.78247 * 13 12 11 39 39 H 1.08998 * 109.40837 * 169.04268 * 13 12 11 40 40 H 0.97002 * 117.94938 * 182.22122 * 16 14 13 41 41 H 0.97003 * 119.99566 * 264.99134 * 17 2 1 42 42 H 0.97003 * 119.99779 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8263 1.1904 6 6 4.1731 -1.4292 2.1905 7 8 3.5701 -1.8842 3.1392 8 6 5.6750 -1.5377 2.1298 9 6 6.1850 -2.2589 3.3791 10 1 5.6865 -3.2246 3.4626 11 6 7.6935 -2.4778 3.2558 12 6 8.2260 -2.9939 4.5981 13 6 8.0973 -1.8729 5.6326 14 6 6.7146 -1.2891 5.5840 15 8 6.3359 -0.6310 6.5297 16 7 5.8806 -1.4561 4.5569 17 7 2.0182 -0.6905 -1.1963 18 6 2.1489 -0.0074 -2.3758 19 1 1.8917 1.0404 -2.4244 20 6 2.6121 -0.6616 -3.5091 21 7 2.9250 -1.9386 -3.4501 22 14 2.7897 0.2701 -5.1184 23 1 3.7442 1.3933 -4.9373 24 1 3.2987 -0.6482 -6.1685 25 1 1.4669 0.8060 -5.5288 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7198 1.2950 30 1 1.7517 -0.1583 2.1369 31 1 3.9824 -0.4627 0.4315 32 1 6.1099 -0.5392 2.0841 33 1 5.9629 -2.1005 1.2420 34 1 7.8939 -3.2125 2.4760 35 1 8.1807 -1.5350 3.0072 36 1 7.6419 -3.8570 4.9172 37 1 9.2732 -3.2775 4.4927 38 1 8.8273 -1.0934 5.4145 39 1 8.2857 -2.2753 6.6279 40 1 5.0173 -1.0154 4.5959 41 1 2.2490 -1.6317 -1.1527 42 1 3.2483 -2.3959 -4.2421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491520865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:42 Heat of formation + Delta-G solvation = -108.559722 kcal Electronic energy + Delta-G solvation = -22443.572203 eV Core-core repulsion = 19035.771579 eV Total energy + Delta-G solvation = -3407.800623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57905 -40.45283 -38.13874 -37.50444 -35.17947 -34.06694 -33.66148 -32.28716 -30.57342 -28.91992 -26.88767 -25.62225 -24.23170 -23.30547 -21.72603 -21.15305 -20.02306 -19.34040 -18.30032 -17.87878 -17.25287 -17.14407 -16.82838 -16.29218 -16.07359 -15.64804 -15.32264 -15.12930 -14.83297 -14.47985 -14.20696 -14.00269 -13.91641 -13.63437 -13.49233 -13.09233 -12.87935 -12.73930 -12.55011 -12.50385 -12.22073 -12.21475 -11.87658 -11.79471 -11.71005 -11.64940 -11.00885 -10.91983 -10.68156 -10.09381 -9.98821 -9.01641 -7.90591 -5.19509 1.51846 1.53239 1.58865 1.62795 1.66732 2.31024 2.37090 2.58999 3.43371 3.55784 3.68956 3.72552 3.89020 3.96460 3.98756 4.10983 4.26440 4.29447 4.39940 4.61303 4.63068 4.66365 4.73033 4.74647 4.87107 4.92657 5.00936 5.05291 5.12016 5.13669 5.25096 5.38276 5.41797 5.57162 5.59387 5.78130 6.30120 6.44991 6.62503 7.19700 7.27893 7.38027 8.09430 8.34905 9.31658 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.003453 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.375862 B = 8106.787855 C = 8954.758242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.160 3.840 3 H 0.058 0.942 4 C 0.123 3.877 5 N -0.711 5.711 6 C 0.502 3.498 7 O -0.587 6.587 8 C -0.149 4.149 9 C 0.155 3.845 10 H 0.072 0.928 11 C -0.129 4.129 12 C -0.118 4.118 13 C -0.129 4.129 14 C 0.507 3.493 15 O -0.622 6.622 16 N -0.706 5.706 17 N -0.730 5.730 18 C -0.238 4.238 19 H 0.076 0.924 20 C -0.067 4.067 21 N -0.964 5.964 22 Si 0.966 3.034 23 H -0.276 1.276 24 H -0.300 1.300 25 H -0.286 1.286 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.412 0.588 32 H 0.117 0.883 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.392 0.608 41 H 0.374 0.626 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.886 -0.760 11.766 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.076 0.924 4 C -0.002 4.002 5 N -0.361 5.361 6 C 0.290 3.710 7 O -0.468 6.468 8 C -0.189 4.189 9 C 0.050 3.950 10 H 0.090 0.910 11 C -0.167 4.167 12 C -0.155 4.155 13 C -0.169 4.169 14 C 0.296 3.704 15 O -0.506 6.506 16 N -0.356 5.356 17 N -0.371 5.371 18 C -0.369 4.369 19 H 0.093 0.907 20 C -0.259 4.259 21 N -0.615 5.615 22 Si 0.796 3.204 23 H -0.202 1.202 24 H -0.226 1.226 25 H -0.212 1.212 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.248 0.752 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.227 0.773 41 H 0.206 0.794 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.479 -0.717 12.735 17.160 hybrid contribution -0.679 0.328 -1.452 1.636 sum 10.800 -0.389 11.283 15.624 Atomic orbital electron populations 1.22255 0.97116 1.01095 1.01235 1.20655 0.93396 0.95629 0.85208 0.92372 1.21516 0.80381 1.00228 0.98056 1.46035 1.07916 1.58558 1.23620 1.21281 0.91428 0.76673 0.81572 1.90666 1.71518 1.49835 1.34811 1.22183 0.89997 1.05441 1.01260 1.20895 0.97918 0.93791 0.82434 0.90970 1.22020 0.90981 1.04246 0.99416 1.21673 1.04010 0.96759 0.93091 1.21701 0.91320 1.00667 1.03197 1.21072 0.89049 0.79360 0.80883 1.90716 1.78119 1.44523 1.37255 1.45882 1.19378 1.50799 1.19566 1.42569 1.78338 1.10311 1.05926 1.19515 1.35033 0.94153 0.88236 0.90652 1.25405 1.02970 0.96671 1.00892 1.69793 1.52371 1.09984 1.29335 0.85338 0.77680 0.77438 0.79984 1.20204 1.22636 1.21223 0.93934 0.91049 0.93724 0.93209 0.90584 0.75180 0.86501 0.84850 0.87175 0.89424 0.91457 0.87430 0.86498 0.87873 0.77284 0.79406 0.94142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 9.49 71.98 0.68 -4.43 16 2 C 0.16 5.61 3.05 44.99 0.14 5.74 16 3 H 0.06 2.01 8.08 -2.38 -0.02 1.99 16 4 C 0.12 3.90 5.23 86.38 0.45 4.36 16 5 N -0.71 -20.95 5.39 -463.06 -2.50 -23.45 16 6 C 0.50 14.02 7.47 87.66 0.65 14.67 16 7 O -0.59 -20.16 14.49 -3.01 -0.04 -20.21 16 8 C -0.15 -2.74 5.35 29.85 0.16 -2.58 16 9 C 0.15 2.79 2.65 45.11 0.12 2.91 16 10 H 0.07 1.50 7.96 -2.39 -0.02 1.48 16 11 C -0.13 -1.34 5.30 30.69 0.16 -1.17 16 12 C -0.12 -1.15 6.03 30.74 0.19 -0.97 16 13 C -0.13 -1.91 6.03 29.71 0.18 -1.73 16 14 C 0.51 12.90 7.71 87.71 0.68 13.58 16 15 O -0.62 -22.14 17.78 -3.04 -0.05 -22.19 16 16 N -0.71 -17.10 5.00 -446.64 -2.23 -19.34 16 17 N -0.73 -32.69 4.56 -322.94 -1.47 -34.16 16 18 C -0.24 -11.94 9.93 84.03 0.83 -11.10 16 19 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 20 C -0.07 -3.52 5.50 84.86 0.47 -3.06 16 21 N -0.96 -54.77 13.06 21.65 0.28 -54.48 16 22 Si 0.97 43.18 29.55 68.60 2.03 45.20 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 26 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.41 12.18 8.14 -92.71 -0.75 11.43 16 32 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.76 8.11 -2.39 -0.02 0.74 16 36 H 0.07 0.76 8.13 -2.39 -0.02 0.74 16 37 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.39 11.52 6.84 -92.71 -0.63 10.89 16 41 H 0.37 18.37 7.80 -92.71 -0.72 17.65 16 42 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -69.86 345.67 -0.35 -70.22 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: -1.08 Total: 42.18 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 4.71 Total: 16.22 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -5.92 Total: -131.43 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -0.10 Total: -42.40 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -69.86 -0.35 -70.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491520865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.341 kcal (2) G-P(sol) polarization free energy of solvation -69.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds