Wall clock time and date at job start Tue Mar 31 2020 02:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.34777 * 120.00376 * 180.02562 * 3 2 1 5 5 O 1.21288 * 119.99593 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00115 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.46783 * 179.97438 * 6 4 3 8 8 C 1.50705 * 109.46609 * 179.97438 * 7 6 4 9 9 O 1.21275 * 119.99929 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99547 * 179.97438 * 8 7 6 11 11 C 1.47426 * 125.65175 * 0.03525 * 10 8 7 12 12 C 1.54908 * 104.83305 * 204.08683 * 11 10 8 13 13 C 1.55163 * 101.58247 * 322.98745 * 12 11 10 14 14 H 1.09001 * 110.71865 * 277.14158 * 13 12 11 15 15 N 1.46498 * 110.72112 * 154.03908 * 13 12 11 16 16 C 1.36942 * 119.99851 * 86.45742 * 15 13 12 17 17 H 1.08005 * 119.99539 * 359.97438 * 16 15 13 18 18 C 1.38806 * 120.00269 * 179.97438 * 16 15 13 19 19 N 1.31626 * 119.99716 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00111 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47006 * 90.00446 * 20 18 16 22 22 H 1.48500 * 109.47058 * 210.00159 * 20 18 16 23 23 H 1.48502 * 109.47016 * 329.99918 * 20 18 16 24 24 C 1.47028 * 125.64647 * 179.71818 * 10 8 7 25 25 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 30 30 H 0.97004 * 119.99396 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46793 * 299.99519 * 6 4 3 32 32 H 1.08992 * 109.46831 * 59.99969 * 6 4 3 33 33 H 1.08992 * 109.47457 * 299.99923 * 7 6 4 34 34 H 1.09001 * 109.46962 * 59.99990 * 7 6 4 35 35 H 1.09001 * 110.36338 * 322.92143 * 11 10 8 36 36 H 1.09002 * 110.36921 * 85.13725 * 11 10 8 37 37 H 1.09005 * 111.00739 * 81.05892 * 12 11 10 38 38 H 1.08992 * 111.00666 * 204.91632 * 12 11 10 39 39 H 0.96994 * 120.00549 * 266.45473 * 15 13 12 40 40 H 0.96997 * 119.99727 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.88157 * 298.39976 * 24 10 8 42 42 H 1.08991 * 109.88114 * 59.56378 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 -0.0005 5 8 4.1316 0.7055 -0.0015 6 6 3.8458 3.0483 0.0001 7 6 5.3759 3.0482 -0.0001 8 6 5.8782 4.4690 -0.0001 9 8 5.0901 5.3908 0.0004 10 7 7.2032 4.7152 0.0003 11 6 8.2669 3.6944 0.0001 12 6 9.4995 4.4058 0.6118 13 6 9.3560 5.8358 0.0268 14 1 9.7696 5.8836 -0.9806 15 7 10.0032 6.8197 0.8981 16 6 11.3393 7.0847 0.7576 17 1 11.9160 6.5680 0.0046 18 6 11.9525 8.0173 1.5828 19 7 11.2498 8.6466 2.5008 20 14 13.7753 8.3783 1.3915 21 1 13.9613 9.4850 0.4190 22 1 14.3422 8.7738 2.7058 23 1 14.4714 7.1630 0.8977 24 6 7.8274 6.0464 -0.0056 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.3880 2.1185 0.0004 31 1 3.4821 3.5626 -0.8895 32 1 3.4829 3.5615 0.8905 33 1 5.7393 2.5340 0.8896 34 1 5.7391 2.5347 -0.8903 35 1 7.9759 2.8433 0.6157 36 1 8.4809 3.3696 -1.0182 37 1 9.4414 4.4214 1.7002 38 1 10.4258 3.9384 0.2782 39 1 9.4854 7.2834 1.5746 40 1 11.6783 9.2980 3.0777 41 1 7.5445 6.5845 -0.9103 42 1 7.5136 6.6068 0.8750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491716706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:29 Heat of formation + Delta-G solvation = -69.693156 kcal Electronic energy + Delta-G solvation = -21728.286750 eV Core-core repulsion = 18322.171507 eV Total energy + Delta-G solvation = -3406.115243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22748 -39.52575 -37.34060 -35.65533 -34.12612 -33.05317 -31.52091 -30.79079 -29.50627 -28.02098 -25.72060 -23.65608 -22.98767 -22.47087 -20.71520 -20.01027 -18.95399 -17.68088 -17.37993 -16.48855 -16.41641 -16.11888 -15.81309 -15.18894 -14.88878 -14.51204 -14.05762 -13.74419 -13.45710 -13.21817 -13.14561 -12.93699 -12.57661 -12.37352 -12.27729 -12.12167 -11.91025 -11.78433 -11.60071 -11.32924 -11.16103 -10.84001 -10.71254 -10.32637 -10.11697 -10.07362 -9.77913 -9.66162 -9.42432 -8.97066 -8.39722 -7.04672 -5.82432 -3.13125 2.39597 2.77407 2.78170 3.26611 3.40965 3.46249 3.47887 4.35429 4.54252 4.55382 4.64952 4.72715 4.88350 4.90779 4.92364 5.07655 5.30693 5.35849 5.38424 5.45748 5.46847 5.55842 5.60248 5.63798 5.68133 5.77245 5.77979 5.98113 6.09511 6.15367 6.26121 6.39216 6.58216 6.60958 6.91473 7.14805 7.64930 7.73691 7.93502 8.30563 8.35283 9.46419 10.00877 10.35539 11.39789 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.054676 B = 0.002455 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.989177 B =11401.545345 C =11651.582343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.735 5.735 4 C 0.514 3.486 5 O -0.541 6.541 6 C -0.124 4.124 7 C -0.119 4.119 8 C 0.525 3.475 9 O -0.552 6.552 10 N -0.611 5.611 11 C 0.097 3.903 12 C -0.154 4.154 13 C 0.171 3.829 14 H 0.063 0.937 15 N -0.716 5.716 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.101 3.899 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.402 0.598 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.065 0.935 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.125 -16.259 -5.905 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.388 5.388 4 C 0.301 3.699 5 O -0.418 6.418 6 C -0.165 4.165 7 C -0.160 4.160 8 C 0.313 3.687 9 O -0.430 6.430 10 N -0.345 5.345 11 C -0.026 4.026 12 C -0.196 4.196 13 C 0.059 3.941 14 H 0.081 0.919 15 N -0.357 5.357 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.022 4.022 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.237 0.763 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.858 -16.424 -5.937 25.702 hybrid contribution 0.556 0.658 0.215 0.888 sum -18.302 -15.766 -5.722 24.825 Atomic orbital electron populations 1.22010 0.94426 1.03256 1.02611 1.21295 0.94240 0.83125 1.02423 1.46086 1.07348 1.08987 1.76401 1.20808 0.82079 0.91796 0.75264 1.90714 1.55262 1.46677 1.49170 1.21377 0.96042 0.93055 1.06003 1.21320 0.94838 0.94073 1.05728 1.20232 0.80824 0.91241 0.76381 1.90686 1.54498 1.46739 1.51110 1.48489 1.04907 1.08993 1.72117 1.22439 0.88082 0.91350 1.00772 1.23558 0.95634 0.98834 1.01536 1.21184 0.88896 0.88995 0.94986 0.91875 1.42357 1.07853 1.45845 1.39632 1.19212 0.85143 1.18383 1.14760 0.90940 1.24784 0.98250 0.99280 0.98454 1.69670 1.35209 1.29859 1.23034 0.86158 0.84848 0.78072 0.76883 1.21642 1.21749 1.20681 1.22281 0.94314 0.83593 1.02058 0.91925 0.91896 0.90795 0.91510 0.91529 0.76348 0.88004 0.87957 0.88239 0.88309 0.91067 0.91514 0.90605 0.90503 0.77959 0.93363 0.91644 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.03 37.16 0.37 -0.26 16 2 C 0.11 0.74 6.39 -4.04 -0.03 0.71 16 3 N -0.73 -5.30 5.56 -60.29 -0.33 -5.64 16 4 C 0.51 5.24 7.83 -10.98 -0.09 5.15 16 5 O -0.54 -7.48 15.98 5.55 0.09 -7.39 16 6 C -0.12 -1.21 4.99 -27.88 -0.14 -1.35 16 7 C -0.12 -1.37 4.00 -27.88 -0.11 -1.48 16 8 C 0.52 7.91 7.85 -10.99 -0.09 7.83 16 9 O -0.55 -9.98 16.31 5.56 0.09 -9.89 16 10 N -0.61 -9.48 3.33 -170.51 -0.57 -10.04 16 11 C 0.10 1.29 6.69 -2.53 -0.02 1.27 16 12 C -0.15 -2.53 6.77 -24.58 -0.17 -2.69 16 13 C 0.17 3.28 3.57 -66.09 -0.24 3.04 16 14 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 15 N -0.72 -17.51 5.25 -51.64 -0.27 -17.78 16 16 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 20 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.10 1.80 6.63 -3.05 -0.02 1.78 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.40 1.87 8.47 -40.82 -0.35 1.53 16 31 H 0.10 0.92 8.10 -51.93 -0.42 0.49 16 32 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.10 1.12 7.80 -51.93 -0.41 0.71 16 34 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.39 10.16 7.53 -40.82 -0.31 9.85 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 LS Contribution 351.40 15.07 5.30 5.30 Total: -1.00 -33.64 351.40 -7.64 -41.28 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.88 Total: 7.36 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -0.76 Total: 6.87 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.45 Total: -60.50 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.18 Total: -17.28 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.64 -7.64 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491716706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.414 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds