Wall clock time and date at job start Tue Mar 31 2020 02:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.34777 * 120.00376 * 180.02562 * 3 2 1 5 5 O 1.21288 * 119.99593 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00115 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.46783 * 179.97438 * 6 4 3 8 8 C 1.50705 * 109.46609 * 179.97438 * 7 6 4 9 9 O 1.21275 * 119.99929 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99547 * 179.97438 * 8 7 6 11 11 C 1.47426 * 125.65175 * 0.03525 * 10 8 7 12 12 C 1.54908 * 104.83305 * 204.08683 * 11 10 8 13 13 C 1.55163 * 101.58247 * 322.98745 * 12 11 10 14 14 H 1.09001 * 110.71865 * 277.14158 * 13 12 11 15 15 N 1.46498 * 110.72112 * 154.03908 * 13 12 11 16 16 C 1.36942 * 119.99851 * 86.45742 * 15 13 12 17 17 H 1.08005 * 119.99539 * 359.97438 * 16 15 13 18 18 C 1.38806 * 120.00269 * 179.97438 * 16 15 13 19 19 N 1.31626 * 119.99716 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00111 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47006 * 90.00446 * 20 18 16 22 22 H 1.48500 * 109.47058 * 210.00159 * 20 18 16 23 23 H 1.48502 * 109.47016 * 329.99918 * 20 18 16 24 24 C 1.47028 * 125.64647 * 179.71818 * 10 8 7 25 25 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 30 30 H 0.97004 * 119.99396 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46793 * 299.99519 * 6 4 3 32 32 H 1.08992 * 109.46831 * 59.99969 * 6 4 3 33 33 H 1.08992 * 109.47457 * 299.99923 * 7 6 4 34 34 H 1.09001 * 109.46962 * 59.99990 * 7 6 4 35 35 H 1.09001 * 110.36338 * 322.92143 * 11 10 8 36 36 H 1.09002 * 110.36921 * 85.13725 * 11 10 8 37 37 H 1.09005 * 111.00739 * 81.05892 * 12 11 10 38 38 H 1.08992 * 111.00666 * 204.91632 * 12 11 10 39 39 H 0.96994 * 120.00549 * 266.45473 * 15 13 12 40 40 H 0.96997 * 119.99727 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.88157 * 298.39976 * 24 10 8 42 42 H 1.08991 * 109.88114 * 59.56378 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 -0.0005 5 8 4.1316 0.7055 -0.0015 6 6 3.8458 3.0483 0.0001 7 6 5.3759 3.0482 -0.0001 8 6 5.8782 4.4690 -0.0001 9 8 5.0901 5.3908 0.0004 10 7 7.2032 4.7152 0.0003 11 6 8.2669 3.6944 0.0001 12 6 9.4995 4.4058 0.6118 13 6 9.3560 5.8358 0.0268 14 1 9.7696 5.8836 -0.9806 15 7 10.0032 6.8197 0.8981 16 6 11.3393 7.0847 0.7576 17 1 11.9160 6.5680 0.0046 18 6 11.9525 8.0173 1.5828 19 7 11.2498 8.6466 2.5008 20 14 13.7753 8.3783 1.3915 21 1 13.9613 9.4850 0.4190 22 1 14.3422 8.7738 2.7058 23 1 14.4714 7.1630 0.8977 24 6 7.8274 6.0464 -0.0056 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.3880 2.1185 0.0004 31 1 3.4821 3.5626 -0.8895 32 1 3.4829 3.5615 0.8905 33 1 5.7393 2.5340 0.8896 34 1 5.7391 2.5347 -0.8903 35 1 7.9759 2.8433 0.6157 36 1 8.4809 3.3696 -1.0182 37 1 9.4414 4.4214 1.7002 38 1 10.4258 3.9384 0.2782 39 1 9.4854 7.2834 1.5746 40 1 11.6783 9.2980 3.0777 41 1 7.5445 6.5845 -0.9103 42 1 7.5136 6.6068 0.8750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491716706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:29 Heat of formation + Delta-G solvation = -94.301540 kcal Electronic energy + Delta-G solvation = -21729.353849 eV Core-core repulsion = 18322.171507 eV Total energy + Delta-G solvation = -3407.182342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27267 -40.54207 -38.72264 -36.31323 -35.91624 -34.03550 -33.22196 -31.44618 -30.95840 -29.48139 -26.82918 -25.35656 -24.07490 -23.31263 -21.65666 -21.37715 -20.11991 -19.33031 -18.65311 -17.56542 -17.39867 -16.91824 -16.87011 -16.45348 -16.23195 -15.70059 -15.37109 -15.13165 -14.77698 -14.40501 -14.35892 -13.91075 -13.67535 -13.38085 -13.23794 -13.12945 -12.96979 -12.88060 -12.67856 -12.65002 -12.37497 -12.35004 -12.18620 -12.07992 -11.75256 -11.67638 -10.94943 -10.94101 -10.93806 -10.08902 -9.68770 -9.04477 -7.94772 -5.25195 1.49507 1.51151 1.58515 1.59428 1.61236 1.84645 2.33193 2.57606 3.35635 3.45783 3.73719 3.76768 3.92840 3.99869 4.08915 4.13258 4.22450 4.24248 4.29831 4.40778 4.53377 4.53638 4.59519 4.71589 4.83239 4.87361 4.93903 4.97307 5.02194 5.06993 5.19392 5.26532 5.27644 5.44658 5.48902 5.54170 6.25829 6.51340 6.54681 7.09055 7.23338 7.32106 8.04102 8.27652 9.28762 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.054676 B = 0.002455 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.989177 B =11401.545345 C =11651.582343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.722 5.722 4 C 0.515 3.485 5 O -0.581 6.581 6 C -0.119 4.119 7 C -0.109 4.109 8 C 0.523 3.477 9 O -0.585 6.585 10 N -0.614 5.614 11 C 0.105 3.895 12 C -0.146 4.146 13 C 0.164 3.836 14 H 0.070 0.930 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.084 0.916 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.976 3.024 21 H -0.289 1.289 22 H -0.299 1.299 23 H -0.265 1.265 24 C 0.110 3.890 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.416 0.584 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.064 0.936 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.720 -18.178 -7.121 27.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.014 4.014 3 N -0.375 5.375 4 C 0.303 3.697 5 O -0.461 6.461 6 C -0.159 4.159 7 C -0.149 4.149 8 C 0.314 3.686 9 O -0.466 6.466 10 N -0.348 5.348 11 C -0.017 4.017 12 C -0.187 4.187 13 C 0.055 3.945 14 H 0.088 0.912 15 N -0.371 5.371 16 C -0.370 4.370 17 H 0.102 0.898 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.805 3.195 21 H -0.216 1.216 22 H -0.226 1.226 23 H -0.190 1.190 24 C -0.014 4.014 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.253 0.747 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.496 -18.396 -7.198 27.755 hybrid contribution 0.638 1.210 0.547 1.474 sum -18.858 -17.186 -6.651 26.367 Atomic orbital electron populations 1.21962 0.92073 1.04142 1.03268 1.21383 0.96120 0.82404 1.01510 1.46041 1.06735 1.09980 1.74753 1.20834 0.82699 0.91372 0.74838 1.90698 1.56381 1.47646 1.51375 1.21330 0.94951 0.92951 1.06687 1.21292 0.95936 0.91139 1.06550 1.20895 0.80169 0.92399 0.75154 1.90671 1.55261 1.48161 1.52550 1.48580 1.05685 1.08329 1.72163 1.22545 0.85686 0.90886 1.02609 1.23366 0.97967 0.96995 1.00325 1.21388 0.89278 0.89402 0.94459 0.91219 1.42544 1.07357 1.47058 1.40178 1.19637 0.86258 1.17218 1.13848 0.89812 1.25621 1.02504 1.00020 0.98879 1.69838 1.36825 1.31058 1.24476 0.85103 0.80004 0.78193 0.76221 1.21581 1.22586 1.18969 1.21973 0.93655 0.84992 1.00822 0.91166 0.91276 0.89838 0.92554 0.92391 0.74719 0.87121 0.87536 0.87627 0.87042 0.88505 0.88768 0.92599 0.89293 0.79638 0.94086 0.91745 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 10.03 71.98 0.72 -0.13 16 2 C 0.11 1.28 6.39 86.38 0.55 1.83 16 3 N -0.72 -9.12 5.56 -463.06 -2.57 -11.69 16 4 C 0.52 9.66 7.83 87.66 0.69 10.35 16 5 O -0.58 -15.29 15.98 -3.05 -0.05 -15.33 16 6 C -0.12 -2.08 4.99 29.85 0.15 -1.93 16 7 C -0.11 -2.26 4.00 29.85 0.12 -2.14 16 8 C 0.52 15.03 7.85 87.66 0.69 15.72 16 9 O -0.59 -20.83 16.31 -3.01 -0.05 -20.88 16 10 N -0.61 -18.13 3.33 -811.77 -2.70 -20.83 16 11 C 0.10 2.48 6.69 86.85 0.58 3.06 16 12 C -0.15 -4.54 6.77 31.99 0.22 -4.32 16 13 C 0.16 6.21 3.57 46.19 0.17 6.37 16 14 H 0.07 2.56 8.12 -2.39 -0.02 2.54 16 15 N -0.73 -36.25 5.25 -317.30 -1.67 -37.92 16 16 C -0.24 -12.81 9.98 84.03 0.84 -11.97 16 17 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 18 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 19 N -0.97 -59.48 13.06 21.65 0.28 -59.19 16 20 Si 0.98 45.46 29.55 68.60 2.03 47.49 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 C 0.11 3.92 6.63 86.73 0.58 4.49 16 25 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.42 2.94 8.47 -92.71 -0.79 2.15 16 31 H 0.11 1.76 8.10 -2.39 -0.02 1.74 16 32 H 0.11 1.80 8.10 -2.39 -0.02 1.78 16 33 H 0.11 2.11 7.80 -2.39 -0.02 2.10 16 34 H 0.11 2.08 8.10 -2.39 -0.02 2.06 16 35 H 0.10 1.88 7.48 -2.39 -0.02 1.86 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.37 20.27 7.53 -92.71 -0.70 19.57 16 40 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.04 1.84 7.70 -2.39 -0.02 1.82 16 Total: -1.00 -73.46 351.40 0.57 -72.90 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: -0.46 Total: 28.10 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 5.76 Total: 17.37 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -6.66 Total: -129.64 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.10 Total: -36.22 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -73.46 0.57 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491716706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.407 kcal (2) G-P(sol) polarization free energy of solvation -73.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds