Wall clock time and date at job start Tue Mar 31 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 119.99969 * 2 1 4 4 N 1.34773 * 119.99932 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00050 * 179.97438 * 4 2 1 6 6 H 1.08996 * 109.47197 * 325.00357 * 5 4 2 7 7 C 1.53002 * 109.47317 * 85.00003 * 5 4 2 8 8 C 1.50696 * 109.47324 * 205.00095 * 5 4 2 9 9 O 1.21284 * 120.00109 * 0.02562 * 8 5 4 10 10 N 1.34777 * 120.00137 * 180.02562 * 8 5 4 11 11 C 1.46506 * 119.99873 * 180.02562 * 10 8 5 12 12 C 1.53002 * 109.47035 * 179.97438 * 11 10 8 13 13 H 1.09003 * 110.64305 * 54.29605 * 12 11 10 14 14 C 1.55149 * 110.72213 * 177.43880 * 12 11 10 15 15 C 1.55119 * 101.49014 * 153.72986 * 14 12 11 16 16 N 1.47423 * 104.94123 * 323.22735 * 15 14 12 17 17 C 1.36942 * 125.64859 * 203.96139 * 16 15 14 18 18 H 1.07996 * 120.00129 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99626 * 0.04303 * 17 16 15 20 20 N 1.31615 * 120.00336 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46918 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46785 * 119.99690 * 21 19 17 24 24 H 1.48492 * 109.47304 * 240.00058 * 21 19 17 25 25 C 1.47018 * 108.70436 * 23.99845 * 16 15 14 26 26 H 1.09008 * 109.47342 * 270.00439 * 1 2 3 27 27 H 1.08999 * 109.46952 * 29.99937 * 1 2 3 28 28 H 1.08999 * 109.47216 * 150.00066 * 1 2 3 29 29 H 0.97002 * 119.99920 * 0.02562 * 4 2 1 30 30 H 1.09004 * 109.47006 * 60.00049 * 7 5 4 31 31 H 1.08992 * 109.47513 * 179.97438 * 7 5 4 32 32 H 1.09002 * 109.46838 * 300.00552 * 7 5 4 33 33 H 0.96999 * 120.00047 * 359.97438 * 10 8 5 34 34 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 35 35 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 36 36 H 1.08996 * 111.00786 * 271.94246 * 14 12 11 37 37 H 1.09002 * 111.00745 * 35.78833 * 14 12 11 38 38 H 1.08994 * 110.42398 * 204.29751 * 15 14 12 39 39 H 1.09010 * 110.29686 * 82.08759 * 15 14 12 40 40 H 0.97003 * 120.00513 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.88360 * 239.52715 * 25 16 15 42 42 H 1.08997 * 110.01473 * 118.43442 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0090 -0.3258 -0.5901 7 6 4.1565 -1.0405 1.4367 8 6 4.1480 -2.4553 -0.5998 9 8 3.3597 -3.2908 -0.9890 10 7 5.4730 -2.6788 -0.7038 11 6 5.9611 -3.9308 -1.2874 12 6 7.4911 -3.9308 -1.2879 13 1 7.8757 -3.7412 -0.2858 14 6 8.0398 -5.2722 -1.8417 15 6 9.4239 -4.8370 -2.3903 16 7 9.2050 -3.4903 -2.9488 17 6 9.9645 -2.8965 -3.9213 18 1 9.7214 -1.9017 -4.2642 19 6 11.0468 -3.5734 -4.4667 20 7 11.3433 -4.7857 -4.0487 21 14 12.0825 -2.7637 -5.7938 22 1 11.5450 -1.4101 -6.0842 23 1 13.4865 -2.6479 -5.3241 24 1 12.0396 -3.5889 -7.0275 25 6 8.0368 -2.8901 -2.2882 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6958 -2.0072 0.0005 30 1 3.7933 -1.8820 2.0268 31 1 5.2464 -1.0410 1.4363 32 1 3.7932 -0.1089 1.8705 33 1 6.1034 -2.0104 -0.3929 34 1 5.5975 -4.7725 -0.6979 35 1 5.5977 -4.0204 -2.3112 36 1 8.1460 -6.0093 -1.0458 37 1 7.4058 -5.6530 -2.6424 38 1 9.7563 -5.5217 -3.1704 39 1 10.1556 -4.7985 -1.5831 40 1 12.0998 -5.2586 -4.4295 41 1 7.2735 -2.6523 -3.0291 42 1 8.3325 -1.9852 -1.7573 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493176499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:52 Heat of formation + Delta-G solvation = -57.458414 kcal Electronic energy + Delta-G solvation = -22257.524836 eV Core-core repulsion = 18851.940131 eV Total energy + Delta-G solvation = -3405.584704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54921 -39.28352 -37.71449 -35.23051 -34.80107 -32.69177 -31.73716 -29.89179 -29.13568 -28.17991 -25.79543 -24.63585 -23.26115 -20.98037 -20.59906 -19.99749 -19.71290 -17.96055 -17.01724 -16.88700 -16.14928 -15.73123 -15.66458 -15.27451 -14.75592 -14.54622 -13.95530 -13.87697 -13.65727 -13.27124 -12.98071 -12.74745 -12.60270 -12.54385 -12.38246 -11.89116 -11.82031 -11.73729 -11.54291 -10.97908 -10.83807 -10.49883 -10.21648 -10.17626 -10.04900 -9.99697 -9.81373 -9.57370 -9.41155 -9.09740 -8.67956 -6.86465 -5.68320 -3.10082 2.31753 2.45252 2.67120 3.27153 3.38257 3.43972 3.46354 4.38495 4.46762 4.57021 4.74679 4.86388 4.92155 5.04479 5.06984 5.19496 5.26880 5.35171 5.43161 5.49324 5.54494 5.64533 5.79447 5.83027 5.98609 6.03799 6.07825 6.29273 6.32047 6.50851 6.53866 6.66662 6.85772 7.21632 7.36109 7.47842 7.60633 7.82642 7.92464 8.02736 8.33571 9.19471 9.80344 10.44646 11.35789 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.003016 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.823889 B = 9281.224493 C = 9848.182267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.713 5.713 5 C 0.121 3.879 6 H 0.115 0.885 7 C -0.159 4.159 8 C 0.510 3.490 9 O -0.543 6.543 10 N -0.717 5.717 11 C 0.132 3.868 12 C -0.115 4.115 13 H 0.077 0.923 14 C -0.135 4.135 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.223 4.223 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.141 3.859 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.410 0.590 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.404 0.596 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.024 0.976 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.940 4.089 11.548 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.301 3.699 3 O -0.426 6.426 4 N -0.368 5.368 5 C 0.013 3.987 6 H 0.133 0.867 7 C -0.217 4.217 8 C 0.294 3.706 9 O -0.420 6.420 10 N -0.368 5.368 11 C 0.009 3.991 12 C -0.134 4.134 13 H 0.095 0.905 14 C -0.175 4.175 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.015 3.985 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.247 0.753 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -17.878 4.194 11.115 21.465 hybrid contribution 0.726 0.314 -0.484 0.927 sum -17.152 4.508 10.631 20.677 Atomic orbital electron populations 1.21868 0.91251 1.05127 1.04837 1.20848 0.90756 0.83158 0.75181 1.90735 1.70755 1.31362 1.49731 1.45871 1.05799 1.09749 1.75332 1.20784 0.82200 0.97153 0.98585 0.86709 1.22127 1.01896 1.03415 0.94292 1.20511 0.82984 0.88209 0.78851 1.90691 1.55285 1.46694 1.49343 1.46029 1.06456 1.21596 1.62692 1.21517 0.93948 0.84882 0.98765 1.22455 0.92183 0.98910 0.99880 0.90500 1.23039 1.00515 0.94407 0.99490 1.21971 0.89741 0.88064 0.97538 1.44505 1.30656 1.14658 1.43229 1.19127 1.06224 0.98721 1.11023 0.90454 1.24794 0.98809 0.96802 1.00306 1.69800 1.30046 1.12008 1.45259 0.85996 0.80003 0.78301 0.81192 1.20507 1.21736 1.21702 1.21332 0.90463 0.93831 0.92910 0.88763 0.88726 0.89949 0.75261 0.91743 0.90724 0.90799 0.76125 0.91447 0.91070 0.92052 0.91835 0.87513 0.96995 0.93748 0.95833 0.96358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.30 36.01 0.37 -0.63 16 2 C 0.51 5.16 7.90 -10.99 -0.09 5.07 16 3 O -0.55 -7.71 16.76 5.55 0.09 -7.62 16 4 N -0.71 -6.78 4.95 -54.93 -0.27 -7.05 16 5 C 0.12 1.23 2.98 -69.08 -0.21 1.03 16 6 H 0.12 1.26 7.58 -51.93 -0.39 0.86 16 7 C -0.16 -1.31 9.38 37.16 0.35 -0.96 16 8 C 0.51 6.23 7.22 -10.99 -0.08 6.15 16 9 O -0.54 -8.22 15.84 5.55 0.09 -8.13 16 10 N -0.72 -8.41 5.32 -60.29 -0.32 -8.73 16 11 C 0.13 1.82 5.00 -4.04 -0.02 1.80 16 12 C -0.11 -1.82 2.98 -88.79 -0.26 -2.08 16 13 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.14 -2.42 6.55 -24.47 -0.16 -2.58 16 15 C 0.15 3.60 5.89 -2.42 -0.01 3.58 16 16 N -0.60 -15.24 3.40 -169.94 -0.58 -15.82 16 17 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -26.73 10.09 55.49 0.56 -26.17 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 C 0.14 2.79 6.64 -3.07 -0.02 2.77 16 26 H 0.09 0.40 8.14 -51.92 -0.42 -0.03 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.41 3.48 7.79 -40.82 -0.32 3.16 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 4.01 7.82 -40.82 -0.32 3.69 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 38 H 0.11 2.87 5.87 -51.93 -0.31 2.57 16 39 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -33.83 345.81 -7.36 -41.19 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.74 Total: 2.75 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -0.38 Total: 7.38 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.61 Total: -57.78 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.18 Total: -15.75 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.83 -7.36 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493176499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.271 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds