Wall clock time and date at job start Tue Mar 31 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 119.99969 * 2 1 4 4 N 1.34773 * 119.99932 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00050 * 179.97438 * 4 2 1 6 6 H 1.08996 * 109.47197 * 325.00357 * 5 4 2 7 7 C 1.53002 * 109.47317 * 85.00003 * 5 4 2 8 8 C 1.50696 * 109.47324 * 205.00095 * 5 4 2 9 9 O 1.21284 * 120.00109 * 0.02562 * 8 5 4 10 10 N 1.34777 * 120.00137 * 180.02562 * 8 5 4 11 11 C 1.46506 * 119.99873 * 180.02562 * 10 8 5 12 12 C 1.53002 * 109.47035 * 179.97438 * 11 10 8 13 13 H 1.09003 * 110.64305 * 54.29605 * 12 11 10 14 14 C 1.55149 * 110.72213 * 177.43880 * 12 11 10 15 15 C 1.55119 * 101.49014 * 153.72986 * 14 12 11 16 16 N 1.47423 * 104.94123 * 323.22735 * 15 14 12 17 17 C 1.36942 * 125.64859 * 203.96139 * 16 15 14 18 18 H 1.07996 * 120.00129 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99626 * 0.04303 * 17 16 15 20 20 N 1.31615 * 120.00336 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46918 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46785 * 119.99690 * 21 19 17 24 24 H 1.48492 * 109.47304 * 240.00058 * 21 19 17 25 25 C 1.47018 * 108.70436 * 23.99845 * 16 15 14 26 26 H 1.09008 * 109.47342 * 270.00439 * 1 2 3 27 27 H 1.08999 * 109.46952 * 29.99937 * 1 2 3 28 28 H 1.08999 * 109.47216 * 150.00066 * 1 2 3 29 29 H 0.97002 * 119.99920 * 0.02562 * 4 2 1 30 30 H 1.09004 * 109.47006 * 60.00049 * 7 5 4 31 31 H 1.08992 * 109.47513 * 179.97438 * 7 5 4 32 32 H 1.09002 * 109.46838 * 300.00552 * 7 5 4 33 33 H 0.96999 * 120.00047 * 359.97438 * 10 8 5 34 34 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 35 35 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 36 36 H 1.08996 * 111.00786 * 271.94246 * 14 12 11 37 37 H 1.09002 * 111.00745 * 35.78833 * 14 12 11 38 38 H 1.08994 * 110.42398 * 204.29751 * 15 14 12 39 39 H 1.09010 * 110.29686 * 82.08759 * 15 14 12 40 40 H 0.97003 * 120.00513 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.88360 * 239.52715 * 25 16 15 42 42 H 1.08997 * 110.01473 * 118.43442 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0090 -0.3258 -0.5901 7 6 4.1565 -1.0405 1.4367 8 6 4.1480 -2.4553 -0.5998 9 8 3.3597 -3.2908 -0.9890 10 7 5.4730 -2.6788 -0.7038 11 6 5.9611 -3.9308 -1.2874 12 6 7.4911 -3.9308 -1.2879 13 1 7.8757 -3.7412 -0.2858 14 6 8.0398 -5.2722 -1.8417 15 6 9.4239 -4.8370 -2.3903 16 7 9.2050 -3.4903 -2.9488 17 6 9.9645 -2.8965 -3.9213 18 1 9.7214 -1.9017 -4.2642 19 6 11.0468 -3.5734 -4.4667 20 7 11.3433 -4.7857 -4.0487 21 14 12.0825 -2.7637 -5.7938 22 1 11.5450 -1.4101 -6.0842 23 1 13.4865 -2.6479 -5.3241 24 1 12.0396 -3.5889 -7.0275 25 6 8.0368 -2.8901 -2.2882 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6958 -2.0072 0.0005 30 1 3.7933 -1.8820 2.0268 31 1 5.2464 -1.0410 1.4363 32 1 3.7932 -0.1089 1.8705 33 1 6.1034 -2.0104 -0.3929 34 1 5.5975 -4.7725 -0.6979 35 1 5.5977 -4.0204 -2.3112 36 1 8.1460 -6.0093 -1.0458 37 1 7.4058 -5.6530 -2.6424 38 1 9.7563 -5.5217 -3.1704 39 1 10.1556 -4.7985 -1.5831 40 1 12.0998 -5.2586 -4.4295 41 1 7.2735 -2.6523 -3.0291 42 1 8.3325 -1.9852 -1.7573 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493176499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:51 Heat of formation + Delta-G solvation = -82.727406 kcal Electronic energy + Delta-G solvation = -22258.620581 eV Core-core repulsion = 18851.940131 eV Total energy + Delta-G solvation = -3406.680450 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46879 -40.24081 -39.23649 -36.23999 -35.97546 -34.38769 -32.65104 -31.52159 -30.04824 -29.46787 -27.38686 -25.91019 -24.55002 -22.25688 -21.61143 -21.37195 -21.01971 -19.03161 -18.66695 -17.90979 -17.14400 -17.02207 -16.67163 -16.52705 -16.11254 -15.79080 -15.51393 -14.83823 -14.72961 -14.34656 -14.27865 -13.79611 -13.55719 -13.50649 -13.33802 -13.25477 -13.13317 -12.96001 -12.80963 -12.70916 -12.62533 -11.98923 -11.89777 -11.83263 -11.58427 -11.37734 -11.07246 -10.94036 -10.75372 -10.27503 -10.13204 -8.88278 -7.78627 -5.22514 1.44340 1.46055 1.46510 1.56877 1.58441 1.83700 2.43016 2.48744 3.31140 3.49640 3.65074 3.81202 3.90019 3.98310 4.03646 4.06745 4.11108 4.46039 4.51081 4.62842 4.66225 4.67783 4.69954 4.77318 4.81072 4.91861 5.05138 5.08961 5.14284 5.15574 5.31225 5.31763 5.40874 5.47953 5.66875 5.83164 6.31974 6.41332 6.49337 7.06364 7.11083 7.18654 7.78973 8.41738 9.23374 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.003016 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.823889 B = 9281.224493 C = 9848.182267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.594 6.594 4 N -0.710 5.710 5 C 0.124 3.876 6 H 0.106 0.894 7 C -0.152 4.152 8 C 0.514 3.486 9 O -0.571 6.571 10 N -0.710 5.710 11 C 0.144 3.856 12 C -0.094 4.094 13 H 0.099 0.901 14 C -0.122 4.122 15 C 0.151 3.849 16 N -0.629 5.629 17 C -0.238 4.238 18 H 0.079 0.921 19 C -0.068 4.068 20 N -0.949 5.949 21 Si 0.978 3.022 22 H -0.268 1.268 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.136 3.864 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.417 0.583 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.415 0.585 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.070 0.930 39 H -0.010 1.010 40 H 0.247 0.753 41 H 0.019 0.981 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.398 4.476 12.701 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.298 3.702 3 O -0.475 6.475 4 N -0.364 5.364 5 C 0.015 3.985 6 H 0.124 0.876 7 C -0.210 4.210 8 C 0.300 3.700 9 O -0.451 6.451 10 N -0.361 5.361 11 C 0.021 3.979 12 C -0.113 4.113 13 H 0.117 0.883 14 C -0.161 4.161 15 C 0.026 3.974 16 N -0.355 5.355 17 C -0.367 4.367 18 H 0.096 0.904 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.807 3.193 22 H -0.192 1.192 23 H -0.218 1.218 24 H -0.219 1.219 25 C 0.011 3.989 26 H 0.133 0.867 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.255 0.745 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.251 0.749 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.008 0.992 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -19.362 4.587 12.291 23.388 hybrid contribution 1.164 0.199 -0.844 1.451 sum -18.198 4.786 11.447 22.025 Atomic orbital electron populations 1.21902 0.87857 1.06114 1.06468 1.21611 0.92375 0.82367 0.73876 1.90713 1.71976 1.32849 1.51991 1.45928 1.05614 1.10074 1.74761 1.20769 0.82793 0.95423 0.99544 0.87584 1.22090 1.02828 1.03362 0.92738 1.20779 0.82678 0.88397 0.78159 1.90681 1.55985 1.47823 1.50611 1.45906 1.06688 1.21256 1.62279 1.21251 0.92125 0.86269 0.98300 1.22297 0.93437 0.95991 0.99577 0.88256 1.22875 0.96781 0.96147 1.00285 1.21775 0.92672 0.87174 0.95792 1.44831 1.31746 1.15632 1.43303 1.19475 1.06652 0.98936 1.11638 0.90359 1.25617 1.00261 0.97522 1.02638 1.70055 1.30283 1.13154 1.46370 0.85006 0.78114 0.77827 0.78371 1.19238 1.21832 1.21850 1.21527 0.88682 0.95242 0.93489 0.86692 0.88660 0.87998 0.74512 0.91011 0.89229 0.91380 0.74874 0.89983 0.92854 0.89004 0.91939 0.91232 0.99152 0.94329 0.96305 0.95345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 10.30 71.24 0.73 -0.83 16 2 C 0.51 9.61 7.90 87.66 0.69 10.30 16 3 O -0.59 -16.50 16.76 -3.05 -0.05 -16.55 16 4 N -0.71 -12.46 4.95 -446.10 -2.21 -14.67 16 5 C 0.12 2.33 2.98 44.24 0.13 2.46 16 6 H 0.11 2.23 7.58 -2.39 -0.02 2.21 16 7 C -0.15 -2.18 9.38 71.98 0.68 -1.51 16 8 C 0.51 11.58 7.22 87.66 0.63 12.21 16 9 O -0.57 -16.34 15.84 -3.04 -0.05 -16.38 16 10 N -0.71 -14.93 5.32 -463.04 -2.46 -17.39 16 11 C 0.14 3.61 5.00 86.38 0.43 4.04 16 12 C -0.09 -2.74 2.98 -9.61 -0.03 -2.77 16 13 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 14 C -0.12 -4.17 6.55 32.06 0.21 -3.96 16 15 C 0.15 7.24 5.89 86.93 0.51 7.75 16 16 N -0.63 -31.91 3.40 -691.58 -2.35 -34.26 16 17 C -0.24 -13.35 10.27 84.03 0.86 -12.48 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 20 N -0.95 -56.48 10.09 21.65 0.22 -56.27 16 21 Si 0.98 45.81 29.55 68.60 2.03 47.83 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 C 0.14 5.22 6.64 86.73 0.58 5.80 16 26 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.42 6.32 7.79 -92.71 -0.72 5.60 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.09 1.01 7.56 -2.39 -0.02 0.99 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.41 7.08 7.82 -92.71 -0.72 6.35 16 34 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.05 1.56 8.00 -2.39 -0.02 1.55 16 36 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.06 2.16 8.05 -2.39 -0.02 2.14 16 38 H 0.07 3.87 5.87 -2.39 -0.01 3.86 16 39 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 40 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.02 0.75 7.73 -2.39 -0.02 0.73 16 42 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -74.90 345.81 0.60 -74.30 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -0.42 Total: 15.77 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 5.90 Total: 17.61 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -6.80 Total: -122.58 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.10 Total: -32.94 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -74.90 0.60 -74.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493176499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.424 kcal (2) G-P(sol) polarization free energy of solvation -74.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds