Wall clock time and date at job start Tue Mar 31 2020 02:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 120.00312 * 2 1 4 4 N 1.34784 * 120.00292 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00075 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47049 * 324.99133 * 5 4 2 7 7 C 1.52997 * 109.47188 * 85.00024 * 5 4 2 8 8 C 1.50706 * 109.46582 * 204.99875 * 5 4 2 9 9 O 1.21279 * 120.00072 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99762 * 180.02562 * 8 5 4 11 11 C 1.46496 * 120.00258 * 180.02562 * 10 8 5 12 12 C 1.52993 * 109.47551 * 179.97438 * 11 10 8 13 13 H 1.09001 * 110.63926 * 305.69932 * 12 11 10 14 14 C 1.55158 * 110.72188 * 182.55767 * 12 11 10 15 15 C 1.54906 * 101.58010 * 206.13109 * 14 12 11 16 16 N 1.47422 * 104.83507 * 37.01195 * 15 14 12 17 17 C 1.36935 * 125.65428 * 155.83534 * 16 15 14 18 18 H 1.07997 * 120.00381 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99831 * 0.02562 * 17 16 15 20 20 N 1.31620 * 119.99816 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00148 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46971 * 90.00224 * 21 19 17 23 23 H 1.48495 * 109.47194 * 210.00422 * 21 19 17 24 24 H 1.48507 * 109.46978 * 330.00154 * 21 19 17 25 25 C 1.47329 * 108.73319 * 335.71128 * 16 15 14 26 26 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46803 * 300.00404 * 1 2 3 28 28 H 1.08998 * 109.47211 * 59.99874 * 1 2 3 29 29 H 0.96996 * 119.99132 * 359.97438 * 4 2 1 30 30 H 1.09002 * 109.47153 * 299.99573 * 7 5 4 31 31 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 32 32 H 1.09004 * 109.47261 * 59.99745 * 7 5 4 33 33 H 0.96999 * 120.00047 * 359.97438 * 10 8 5 34 34 H 1.09004 * 109.46875 * 299.99676 * 11 10 8 35 35 H 1.09000 * 109.47024 * 59.99522 * 11 10 8 36 36 H 1.09000 * 111.00507 * 324.20848 * 14 12 11 37 37 H 1.08999 * 111.00105 * 88.02000 * 14 12 11 38 38 H 1.09002 * 110.36564 * 155.84972 * 15 14 12 39 39 H 1.09001 * 110.37243 * 278.16778 * 15 14 12 40 40 H 0.97000 * 119.99896 * 179.97438 * 20 19 17 41 41 H 1.08999 * 110.06356 * 241.87234 * 25 16 15 42 42 H 1.09003 * 109.84391 * 120.60987 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0094 -0.3251 -0.5888 7 6 4.1554 -1.0424 1.4373 8 6 4.1484 -2.4546 -0.6011 9 8 3.3604 -3.2895 -0.9919 10 7 5.4735 -2.6779 -0.7044 11 6 5.9621 -3.9291 -1.2892 12 6 7.4921 -3.9292 -1.2886 13 1 7.8765 -3.0391 -1.7866 14 6 8.0412 -5.2150 -1.9611 15 6 9.4253 -5.3556 -1.2797 16 7 9.2060 -4.9238 0.1127 17 6 9.9645 -5.2925 1.1916 18 1 9.7205 -4.9204 2.1757 19 6 11.0470 -6.1445 1.0203 20 7 11.3446 -6.5974 -0.1791 21 14 12.0812 -6.6480 2.4920 22 1 11.5198 -7.8852 3.0915 23 1 13.4772 -6.9001 2.0530 24 1 12.0688 -5.5590 3.5016 25 6 8.0375 -4.0273 0.1517 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6959 -2.0072 -0.0005 30 1 3.7919 -0.1113 1.8721 31 1 5.2454 -1.0428 1.4377 32 1 3.7918 -1.8846 2.0261 33 1 6.1038 -2.0099 -0.3921 34 1 5.5982 -4.7715 -0.7010 35 1 5.5996 -4.0173 -2.3134 36 1 7.4073 -6.0735 -1.7389 37 1 8.1471 -5.0783 -3.0373 38 1 9.7580 -6.3932 -1.3071 39 1 10.1554 -4.7092 -1.7668 40 1 12.1012 -7.1925 -0.2988 41 1 8.3354 -3.0396 0.5035 42 1 7.2741 -4.4428 0.8096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493176502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:00 Heat of formation + Delta-G solvation = -57.143673 kcal Electronic energy + Delta-G solvation = -22278.237649 eV Core-core repulsion = 18872.666593 eV Total energy + Delta-G solvation = -3405.571056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55125 -39.28887 -37.71022 -35.22934 -34.79877 -32.69253 -31.73794 -29.88594 -29.12307 -28.19364 -25.78070 -24.62947 -23.25945 -20.98432 -20.60292 -20.00581 -19.69302 -17.97523 -16.99213 -16.88856 -16.13865 -15.96424 -15.46498 -15.08542 -14.89985 -14.63062 -13.97456 -13.81031 -13.61352 -13.32814 -12.98832 -12.73062 -12.57144 -12.54281 -12.35457 -11.88821 -11.81331 -11.72948 -11.53669 -10.98762 -10.82527 -10.50374 -10.22615 -10.19076 -10.07574 -9.99920 -9.81318 -9.57306 -9.41477 -9.09707 -8.68149 -6.87150 -5.68581 -3.10380 2.31534 2.44390 2.67213 3.27635 3.37902 3.42834 3.44819 4.38692 4.46222 4.57347 4.77563 4.85771 4.88969 5.04448 5.08704 5.19411 5.31364 5.35037 5.45611 5.48838 5.54310 5.64102 5.82262 5.86732 5.99227 6.03474 6.07930 6.29121 6.31891 6.50166 6.53929 6.66239 6.85283 7.21421 7.36100 7.47790 7.59065 7.82197 7.91541 8.02746 8.33068 9.18872 9.79624 10.44263 11.35442 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.032536 B = 0.002966 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.376617 B = 9438.560290 C = 9976.802224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.514 3.486 3 O -0.550 6.550 4 N -0.712 5.712 5 C 0.122 3.878 6 H 0.114 0.886 7 C -0.160 4.160 8 C 0.509 3.491 9 O -0.543 6.543 10 N -0.717 5.717 11 C 0.132 3.868 12 C -0.116 4.116 13 H 0.077 0.923 14 C -0.135 4.135 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.141 3.859 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.411 0.589 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.404 0.596 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.019 0.981 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.908 10.100 -1.289 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.428 6.428 4 N -0.367 5.367 5 C 0.014 3.986 6 H 0.132 0.868 7 C -0.219 4.219 8 C 0.294 3.706 9 O -0.420 6.420 10 N -0.368 5.368 11 C 0.009 3.991 12 C -0.135 4.135 13 H 0.095 0.905 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.015 3.985 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.248 0.752 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.239 0.761 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.835 10.104 -1.523 20.555 hybrid contribution 0.719 -0.313 0.862 1.165 sum -17.117 9.791 -0.660 19.730 Atomic orbital electron populations 1.21831 0.91271 1.04463 1.05341 1.20846 0.90744 0.83162 0.75159 1.90727 1.70701 1.31377 1.49980 1.45927 1.05844 1.09750 1.75143 1.20784 0.82188 0.97005 0.98672 0.86842 1.22139 1.02059 1.03491 0.94175 1.20520 0.82983 0.88235 0.78838 1.90690 1.55303 1.46690 1.49329 1.46027 1.06455 1.21589 1.62704 1.21512 0.93943 0.85364 0.98290 1.22458 0.92192 1.00138 0.98697 0.90508 1.23006 1.00498 0.95336 0.98578 1.21934 0.89763 1.02943 0.82658 1.44577 1.30852 1.53085 1.04581 1.19074 1.06305 1.22847 0.86948 0.90532 1.24795 0.98790 1.00171 0.96952 1.69793 1.30085 1.37514 1.19714 0.86068 0.79556 0.78451 0.81392 1.21568 1.21631 1.20741 1.21389 0.90464 0.93741 0.92932 0.90371 0.88629 0.88612 0.75220 0.90814 0.90592 0.91593 0.76127 0.91026 0.91499 0.91828 0.92089 0.87498 0.96992 0.93696 0.96317 0.95747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.39 36.01 0.37 -0.60 16 2 C 0.51 5.08 7.90 -10.98 -0.09 5.00 16 3 O -0.55 -7.57 16.76 5.56 0.09 -7.48 16 4 N -0.71 -6.78 4.95 -54.93 -0.27 -7.05 16 5 C 0.12 1.24 2.99 -69.08 -0.21 1.03 16 6 H 0.11 1.17 7.58 -51.93 -0.39 0.78 16 7 C -0.16 -1.44 9.38 37.16 0.35 -1.09 16 8 C 0.51 6.22 7.22 -10.98 -0.08 6.14 16 9 O -0.54 -8.22 15.84 5.56 0.09 -8.13 16 10 N -0.72 -8.40 5.32 -60.30 -0.32 -8.72 16 11 C 0.13 1.82 5.00 -4.05 -0.02 1.80 16 12 C -0.12 -1.83 2.98 -88.79 -0.26 -2.09 16 13 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 14 C -0.13 -2.42 6.54 -24.58 -0.16 -2.58 16 15 C 0.15 3.59 5.89 -2.53 -0.01 3.57 16 16 N -0.60 -15.13 3.40 -169.83 -0.58 -15.71 16 17 C -0.22 -6.15 10.28 -15.06 -0.15 -6.30 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.64 10.09 55.49 0.56 -26.08 16 21 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.14 2.75 6.67 -2.90 -0.02 2.73 16 26 H 0.08 0.30 7.91 -51.93 -0.41 -0.11 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.41 3.55 7.63 -40.82 -0.31 3.24 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.61 7.56 -51.93 -0.39 0.22 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 4.00 7.82 -40.82 -0.32 3.68 16 34 H 0.07 1.09 8.01 -51.93 -0.42 0.68 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 LS Contribution 345.52 15.07 5.21 5.21 Total: -1.00 -33.53 345.52 -7.34 -40.87 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.72 Total: 3.07 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.38 Total: 7.18 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.61 Total: -57.57 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.18 Total: -15.61 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.53 -7.34 -40.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493176502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.274 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds