Wall clock time and date at job start Tue Mar 31 2020 02:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 120.00312 * 2 1 4 4 N 1.34784 * 120.00292 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00075 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47049 * 324.99133 * 5 4 2 7 7 C 1.52997 * 109.47188 * 85.00024 * 5 4 2 8 8 C 1.50706 * 109.46582 * 204.99875 * 5 4 2 9 9 O 1.21279 * 120.00072 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99762 * 180.02562 * 8 5 4 11 11 C 1.46496 * 120.00258 * 180.02562 * 10 8 5 12 12 C 1.52993 * 109.47551 * 179.97438 * 11 10 8 13 13 H 1.09001 * 110.63926 * 305.69932 * 12 11 10 14 14 C 1.55158 * 110.72188 * 182.55767 * 12 11 10 15 15 C 1.54906 * 101.58010 * 206.13109 * 14 12 11 16 16 N 1.47422 * 104.83507 * 37.01195 * 15 14 12 17 17 C 1.36935 * 125.65428 * 155.83534 * 16 15 14 18 18 H 1.07997 * 120.00381 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99831 * 0.02562 * 17 16 15 20 20 N 1.31620 * 119.99816 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00148 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46971 * 90.00224 * 21 19 17 23 23 H 1.48495 * 109.47194 * 210.00422 * 21 19 17 24 24 H 1.48507 * 109.46978 * 330.00154 * 21 19 17 25 25 C 1.47329 * 108.73319 * 335.71128 * 16 15 14 26 26 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46803 * 300.00404 * 1 2 3 28 28 H 1.08998 * 109.47211 * 59.99874 * 1 2 3 29 29 H 0.96996 * 119.99132 * 359.97438 * 4 2 1 30 30 H 1.09002 * 109.47153 * 299.99573 * 7 5 4 31 31 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 32 32 H 1.09004 * 109.47261 * 59.99745 * 7 5 4 33 33 H 0.96999 * 120.00047 * 359.97438 * 10 8 5 34 34 H 1.09004 * 109.46875 * 299.99676 * 11 10 8 35 35 H 1.09000 * 109.47024 * 59.99522 * 11 10 8 36 36 H 1.09000 * 111.00507 * 324.20848 * 14 12 11 37 37 H 1.08999 * 111.00105 * 88.02000 * 14 12 11 38 38 H 1.09002 * 110.36564 * 155.84972 * 15 14 12 39 39 H 1.09001 * 110.37243 * 278.16778 * 15 14 12 40 40 H 0.97000 * 119.99896 * 179.97438 * 20 19 17 41 41 H 1.08999 * 110.06356 * 241.87234 * 25 16 15 42 42 H 1.09003 * 109.84391 * 120.60987 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0094 -0.3251 -0.5888 7 6 4.1554 -1.0424 1.4373 8 6 4.1484 -2.4546 -0.6011 9 8 3.3604 -3.2895 -0.9919 10 7 5.4735 -2.6779 -0.7044 11 6 5.9621 -3.9291 -1.2892 12 6 7.4921 -3.9292 -1.2886 13 1 7.8765 -3.0391 -1.7866 14 6 8.0412 -5.2150 -1.9611 15 6 9.4253 -5.3556 -1.2797 16 7 9.2060 -4.9238 0.1127 17 6 9.9645 -5.2925 1.1916 18 1 9.7205 -4.9204 2.1757 19 6 11.0470 -6.1445 1.0203 20 7 11.3446 -6.5974 -0.1791 21 14 12.0812 -6.6480 2.4920 22 1 11.5198 -7.8852 3.0915 23 1 13.4772 -6.9001 2.0530 24 1 12.0688 -5.5590 3.5016 25 6 8.0375 -4.0273 0.1517 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6959 -2.0072 -0.0005 30 1 3.7919 -0.1113 1.8721 31 1 5.2454 -1.0428 1.4377 32 1 3.7918 -1.8846 2.0261 33 1 6.1038 -2.0099 -0.3921 34 1 5.5982 -4.7715 -0.7010 35 1 5.5996 -4.0173 -2.3134 36 1 7.4073 -6.0735 -1.7389 37 1 8.1471 -5.0783 -3.0373 38 1 9.7580 -6.3932 -1.3071 39 1 10.1554 -4.7092 -1.7668 40 1 12.1012 -7.1925 -0.2988 41 1 8.3354 -3.0396 0.5035 42 1 7.2741 -4.4428 0.8096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493176502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:59 Heat of formation + Delta-G solvation = -82.002090 kcal Electronic energy + Delta-G solvation = -22279.315591 eV Core-core repulsion = 18872.666593 eV Total energy + Delta-G solvation = -3406.648998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46894 -40.23683 -39.22364 -36.23433 -35.97430 -34.37866 -32.65282 -31.50419 -30.04669 -29.47946 -27.36540 -25.90742 -24.55360 -22.24720 -21.60278 -21.39334 -20.98947 -19.03037 -18.66533 -17.86578 -17.16173 -17.11433 -16.67169 -16.32271 -16.04528 -15.95381 -15.53331 -14.80523 -14.73178 -14.36885 -14.26205 -13.80424 -13.53531 -13.46994 -13.36877 -13.24905 -13.12340 -12.95583 -12.82531 -12.67074 -12.62110 -12.01787 -11.89754 -11.82262 -11.58257 -11.37048 -11.06971 -10.93791 -10.73456 -10.27578 -10.13302 -8.87270 -7.77175 -5.20979 1.44641 1.46869 1.48360 1.56907 1.58227 1.83699 2.43348 2.49961 3.32642 3.49463 3.65367 3.82268 3.90491 3.98445 4.01562 4.08022 4.10686 4.45932 4.49892 4.61381 4.66049 4.68000 4.70969 4.75540 4.81693 4.92814 5.05810 5.08363 5.13894 5.14512 5.31348 5.31623 5.41465 5.48863 5.66982 5.83634 6.32633 6.41435 6.49381 7.06458 7.11909 7.18270 7.79923 8.43116 9.24772 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.032536 B = 0.002966 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.376617 B = 9438.560290 C = 9976.802224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.509 3.491 3 O -0.594 6.594 4 N -0.710 5.710 5 C 0.126 3.874 6 H 0.114 0.886 7 C -0.154 4.154 8 C 0.514 3.486 9 O -0.571 6.571 10 N -0.710 5.710 11 C 0.145 3.855 12 C -0.095 4.095 13 H 0.096 0.904 14 C -0.122 4.122 15 C 0.151 3.849 16 N -0.629 5.629 17 C -0.237 4.237 18 H 0.080 0.920 19 C -0.069 4.069 20 N -0.950 5.950 21 Si 0.979 3.021 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.270 1.270 25 C 0.137 3.863 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.416 0.584 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.415 0.585 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.070 0.930 39 H -0.011 1.011 40 H 0.246 0.754 41 H 0.030 0.970 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.435 11.012 -0.976 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.299 3.701 3 O -0.474 6.474 4 N -0.364 5.364 5 C 0.017 3.983 6 H 0.131 0.869 7 C -0.213 4.213 8 C 0.300 3.700 9 O -0.451 6.451 10 N -0.361 5.361 11 C 0.021 3.979 12 C -0.114 4.114 13 H 0.114 0.886 14 C -0.161 4.161 15 C 0.026 3.974 16 N -0.356 5.356 17 C -0.366 4.366 18 H 0.098 0.902 19 C -0.262 4.262 20 N -0.600 5.600 21 Si 0.807 3.193 22 H -0.213 1.213 23 H -0.221 1.221 24 H -0.195 1.195 25 C 0.012 3.988 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.254 0.746 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.251 0.749 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.007 0.993 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -19.390 11.032 -1.197 22.341 hybrid contribution 1.175 -0.587 0.768 1.521 sum -18.216 10.445 -0.429 21.002 Atomic orbital electron populations 1.21874 0.87922 1.06221 1.06230 1.21591 0.92329 0.82346 0.73853 1.90706 1.71884 1.32764 1.52089 1.45994 1.05637 1.10092 1.74652 1.20751 0.82790 0.95612 0.99141 0.86874 1.22102 1.02759 1.03215 0.93223 1.20787 0.82673 0.88424 0.78152 1.90681 1.56005 1.47796 1.50614 1.45902 1.06692 1.21148 1.62387 1.21240 0.92110 0.85786 0.98796 1.22297 0.93460 0.99729 0.95964 0.88613 1.22839 0.96878 0.96565 0.99834 1.21728 0.92587 1.00124 0.82937 1.44906 1.31986 1.54220 1.04443 1.19455 1.06629 1.22523 0.88028 0.90170 1.25627 1.00301 1.00729 0.99504 1.70054 1.30308 1.38135 1.21478 0.85071 0.77460 0.78200 0.78567 1.21327 1.22110 1.19468 1.21580 0.88720 0.93034 0.95490 0.88219 0.87510 0.87791 0.74594 0.91181 0.89471 0.91634 0.74864 0.92383 0.90480 0.91814 0.89308 0.91193 0.99292 0.94388 0.95191 0.95769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.39 71.24 0.74 -0.76 16 2 C 0.51 9.36 7.90 87.66 0.69 10.05 16 3 O -0.59 -15.90 16.76 -3.03 -0.05 -15.95 16 4 N -0.71 -12.41 4.95 -446.09 -2.21 -14.62 16 5 C 0.13 2.35 2.99 44.25 0.13 2.48 16 6 H 0.11 2.18 7.58 -2.39 -0.02 2.16 16 7 C -0.15 -2.52 9.38 71.98 0.68 -1.85 16 8 C 0.51 11.54 7.22 87.66 0.63 12.18 16 9 O -0.57 -16.33 15.84 -3.03 -0.05 -16.38 16 10 N -0.71 -14.90 5.32 -463.07 -2.46 -17.36 16 11 C 0.14 3.62 5.00 86.38 0.43 4.05 16 12 C -0.10 -2.79 2.98 -9.61 -0.03 -2.82 16 13 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 14 C -0.12 -4.20 6.54 31.99 0.21 -3.99 16 15 C 0.15 7.25 5.89 86.85 0.51 7.76 16 16 N -0.63 -31.56 3.40 -691.22 -2.35 -33.91 16 17 C -0.24 -13.14 10.28 84.04 0.86 -12.27 16 18 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 19 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 20 N -0.95 -56.38 10.09 21.65 0.22 -56.16 16 21 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 C 0.14 5.14 6.67 86.67 0.58 5.72 16 26 H 0.10 0.48 7.91 -2.39 -0.02 0.46 16 27 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.42 6.46 7.63 -92.71 -0.71 5.76 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.21 7.56 -2.39 -0.02 1.19 16 32 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.41 7.05 7.82 -92.71 -0.72 6.33 16 34 H 0.06 1.66 8.01 -2.38 -0.02 1.64 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 2.20 8.05 -2.39 -0.02 2.18 16 37 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.07 3.89 5.87 -2.39 -0.01 3.87 16 39 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.45 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.02 0.92 7.73 -2.39 -0.02 0.90 16 Total: -1.00 -73.68 345.52 0.62 -73.05 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -0.41 Total: 16.82 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 5.90 Total: 17.11 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -6.81 Total: -122.05 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.10 Total: -32.33 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -73.68 0.62 -73.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493176502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.947 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds