Wall clock time and date at job start Tue Mar 31 2020 02:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21285 * 120.00084 * 2 1 4 4 N 1.34782 * 119.99987 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99798 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.46918 * 179.72355 * 5 4 2 7 7 O 1.21282 * 120.00241 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00122 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00553 * 174.81114 * 8 6 5 10 10 C 1.53008 * 110.43485 * 302.03955 * 9 8 6 11 11 N 1.46496 * 109.46554 * 307.72758 * 10 9 8 12 12 C 1.36941 * 119.99303 * 174.97399 * 11 10 9 13 13 H 1.07997 * 120.00414 * 359.97438 * 12 11 10 14 14 C 1.38820 * 119.99765 * 179.97438 * 12 11 10 15 15 N 1.31622 * 119.99726 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99983 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47276 * 60.00027 * 16 14 12 18 18 H 1.48499 * 109.47164 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47328 * 299.99763 * 16 14 12 20 20 C 1.54882 * 110.49091 * 179.34990 * 9 8 6 21 21 C 1.54883 * 102.75298 * 279.26573 * 20 9 8 22 22 C 1.54266 * 104.19570 * 322.06045 * 21 20 9 23 23 C 1.53870 * 106.59934 * 23.60381 * 22 21 20 24 24 H 1.08998 * 109.47368 * 240.00408 * 1 2 3 25 25 H 1.09004 * 109.47191 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47130 * 119.99757 * 1 2 3 27 27 H 0.96999 * 119.99617 * 359.72228 * 4 2 1 28 28 H 1.08995 * 109.47469 * 299.72396 * 5 4 2 29 29 H 1.09003 * 109.47168 * 59.72426 * 5 4 2 30 30 H 0.97006 * 120.00391 * 354.81649 * 8 6 5 31 31 H 1.09002 * 109.46840 * 67.72626 * 10 9 8 32 32 H 1.08996 * 109.46749 * 187.72459 * 10 9 8 33 33 H 0.96997 * 120.00448 * 354.96896 * 11 10 9 34 34 H 0.97000 * 119.99756 * 180.02562 * 15 14 12 35 35 H 1.09004 * 110.75491 * 37.58371 * 20 9 8 36 36 H 1.09004 * 110.75466 * 160.95086 * 20 9 8 37 37 H 1.08998 * 110.49180 * 203.38015 * 21 20 9 38 38 H 1.09000 * 110.48808 * 80.73296 * 21 20 9 39 39 H 1.09002 * 110.03214 * 264.31929 * 22 21 20 40 40 H 1.08998 * 110.03639 * 142.89448 * 22 21 20 41 41 H 1.08999 * 110.03934 * 240.71648 * 23 22 21 42 42 H 1.08998 * 110.03177 * 119.28603 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 0.0061 7 8 3.3601 -3.5098 0.0101 8 7 5.4732 -2.8343 0.0082 9 6 5.9625 -4.2099 0.1288 10 6 5.4432 -4.8505 1.4177 11 7 5.7512 -3.9793 2.5544 12 6 5.2910 -4.2966 3.8045 13 1 4.7007 -5.1888 3.9523 14 6 5.5833 -3.4714 4.8819 15 7 6.3032 -2.3843 4.7018 16 14 4.9551 -3.9038 6.5870 17 1 5.4937 -5.2271 6.9922 18 1 5.4014 -2.8706 7.5558 19 1 3.4712 -3.9579 6.5689 20 6 7.5105 -4.2400 0.0907 21 6 7.8170 -4.1487 -1.4248 22 6 6.7167 -5.0046 -2.0855 23 6 5.5376 -5.0435 -1.0977 24 1 -0.3634 -0.5137 0.8900 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 1.6958 -2.0072 0.0032 28 1 4.0096 -0.6571 -0.8919 29 1 4.0089 -0.6497 0.8881 30 1 6.1031 -2.1007 -0.0701 31 1 4.3641 -4.9869 1.3463 32 1 5.9231 -5.8185 1.5611 33 1 6.2811 -3.1778 2.4216 34 1 6.5078 -1.8079 5.4547 35 1 7.9268 -3.3836 0.6213 36 1 7.8891 -5.1742 0.5057 37 1 8.8025 -4.5617 -1.6403 38 1 7.7526 -3.1154 -1.7655 39 1 7.0865 -6.0140 -2.2656 40 1 6.4024 -4.5488 -3.0244 41 1 5.3350 -6.0718 -0.7983 42 1 4.6510 -4.6065 -1.5571 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495124745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:03 Heat of formation + Delta-G solvation = -72.572162 kcal Electronic energy + Delta-G solvation = -23309.983361 eV Core-core repulsion = 19903.743275 eV Total energy + Delta-G solvation = -3406.240086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29965 -39.30799 -37.58503 -34.40239 -34.20735 -33.15415 -31.16287 -30.34934 -28.69088 -28.36510 -26.54713 -24.48220 -22.21500 -21.06784 -20.47506 -20.31584 -19.02251 -17.58951 -17.10442 -16.36476 -15.86812 -15.74439 -15.62214 -14.97147 -14.59308 -14.49976 -14.13091 -13.62886 -13.23954 -13.08568 -12.92966 -12.77636 -12.60717 -12.54714 -12.12779 -11.97815 -11.42978 -11.31838 -11.10116 -10.93421 -10.80711 -10.73397 -10.42757 -10.34856 -10.06035 -9.92420 -9.69668 -9.47518 -9.08438 -8.80432 -8.61744 -6.86345 -5.74227 -3.00835 2.66887 2.88626 3.05475 3.45624 3.50094 3.51007 3.69004 4.57489 4.68069 4.79037 4.82230 4.93106 5.03129 5.22972 5.29483 5.42244 5.49142 5.58042 5.61845 5.62786 5.65407 5.74595 5.77967 5.89947 5.94221 5.99740 6.18070 6.27584 6.29341 6.39139 6.41404 6.53147 6.57588 6.87047 7.06639 7.56682 7.72965 7.80083 8.25913 8.45261 8.49914 9.56727 10.14301 10.50180 11.48752 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.007097 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.877229 B = 3944.327169 C = 6273.929604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.553 6.553 4 N -0.714 5.714 5 C 0.098 3.902 6 C 0.522 3.478 7 O -0.535 6.535 8 N -0.702 5.702 9 C 0.170 3.830 10 C 0.146 3.854 11 N -0.725 5.725 12 C -0.233 4.233 13 H 0.067 0.933 14 C -0.015 4.015 15 N -0.935 5.935 16 Si 0.905 3.095 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.287 1.287 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.123 4.123 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.412 0.588 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.399 0.601 31 H 0.044 0.956 32 H 0.021 0.979 33 H 0.382 0.618 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 -0.385 -15.210 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.431 6.431 4 N -0.370 5.370 5 C -0.030 4.030 6 C 0.307 3.693 7 O -0.412 6.412 8 N -0.352 5.352 9 C 0.084 3.916 10 C 0.018 3.982 11 N -0.369 5.369 12 C -0.364 4.364 13 H 0.085 0.915 14 C -0.210 4.210 15 N -0.585 5.585 16 Si 0.737 3.263 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.214 1.214 20 C -0.157 4.157 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.162 4.162 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.250 0.750 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.233 0.767 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.215 0.785 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.521 -0.405 -15.053 15.465 hybrid contribution -0.003 0.000 1.073 1.073 sum -3.524 -0.405 -13.980 14.423 Atomic orbital electron populations 1.21884 0.91458 1.05355 1.04439 1.20785 0.90692 0.83144 0.75566 1.90720 1.70894 1.31466 1.49996 1.45736 1.06208 1.09823 1.75187 1.21073 0.82143 0.95150 1.04606 1.20169 0.82925 0.90510 0.75651 1.90636 1.55256 1.45654 1.49687 1.45687 1.06363 1.09112 1.74086 1.21406 0.93536 0.81099 0.95576 1.21053 0.98832 0.93003 0.85362 1.42185 1.63996 1.27606 1.03113 1.19172 1.26238 1.05909 0.85081 0.91474 1.24682 1.01041 0.97430 0.97862 1.69630 1.43379 1.15019 1.30429 0.86291 0.78387 0.77164 0.84504 1.21359 1.21749 1.21419 1.22734 0.93640 1.03646 0.95695 1.22406 0.98401 0.99847 0.95657 1.22139 0.95755 0.99831 0.98317 1.22444 0.98259 1.00478 0.95053 0.89173 0.89004 0.89440 0.75014 0.89073 0.87962 0.76737 0.93848 0.96166 0.78465 0.93605 0.90517 0.89742 0.91750 0.91897 0.92050 0.92386 0.91022 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.32 36.00 0.37 -1.21 16 2 C 0.51 7.11 7.94 -10.98 -0.09 7.03 16 3 O -0.55 -9.86 17.09 5.55 0.09 -9.77 16 4 N -0.71 -9.86 5.53 -61.47 -0.34 -10.20 16 5 C 0.10 1.41 6.16 -5.19 -0.03 1.38 16 6 C 0.52 8.38 7.14 -10.99 -0.08 8.30 16 7 O -0.54 -9.86 12.62 5.56 0.07 -9.79 16 8 N -0.70 -10.40 4.54 -46.07 -0.21 -10.61 16 9 C 0.17 2.65 0.40 -130.16 -0.05 2.60 16 10 C 0.15 2.99 4.75 -4.04 -0.02 2.97 16 11 N -0.72 -17.95 5.31 -59.91 -0.32 -18.27 16 12 C -0.23 -6.56 9.99 -15.05 -0.15 -6.71 16 13 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 14 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 15 N -0.94 -28.03 13.06 55.49 0.72 -27.30 16 16 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 C -0.12 -1.64 5.66 -24.75 -0.14 -1.78 16 21 C -0.13 -1.37 6.79 -25.08 -0.17 -1.54 16 22 C -0.12 -1.36 6.80 -25.62 -0.17 -1.53 16 23 C -0.12 -1.70 5.67 -25.61 -0.15 -1.84 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.41 5.39 7.44 -40.82 -0.30 5.09 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.40 5.05 8.49 -40.82 -0.35 4.70 16 31 H 0.04 0.99 6.53 -51.93 -0.34 0.65 16 32 H 0.02 0.42 8.02 -51.93 -0.42 0.01 16 33 H 0.38 9.72 7.27 -40.82 -0.30 9.42 16 34 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 36 H 0.08 1.21 7.97 -51.93 -0.41 0.80 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 42 H 0.07 1.09 6.55 -51.93 -0.34 0.75 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -34.17 343.73 -7.23 -41.40 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -6.63 Total: 14.45 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -0.77 Total: 7.15 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -0.14 Total: -66.38 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.16 Total: -19.56 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.17 -7.23 -41.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495124745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.172 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds