Wall clock time and date at job start Tue Mar 31 2020 02:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21285 * 120.00084 * 2 1 4 4 N 1.34782 * 119.99987 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99798 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.46918 * 179.72355 * 5 4 2 7 7 O 1.21282 * 120.00241 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00122 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00553 * 174.81114 * 8 6 5 10 10 C 1.53008 * 110.43485 * 302.03955 * 9 8 6 11 11 N 1.46496 * 109.46554 * 307.72758 * 10 9 8 12 12 C 1.36941 * 119.99303 * 174.97399 * 11 10 9 13 13 H 1.07997 * 120.00414 * 359.97438 * 12 11 10 14 14 C 1.38820 * 119.99765 * 179.97438 * 12 11 10 15 15 N 1.31622 * 119.99726 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99983 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47276 * 60.00027 * 16 14 12 18 18 H 1.48499 * 109.47164 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47328 * 299.99763 * 16 14 12 20 20 C 1.54882 * 110.49091 * 179.34990 * 9 8 6 21 21 C 1.54883 * 102.75298 * 279.26573 * 20 9 8 22 22 C 1.54266 * 104.19570 * 322.06045 * 21 20 9 23 23 C 1.53870 * 106.59934 * 23.60381 * 22 21 20 24 24 H 1.08998 * 109.47368 * 240.00408 * 1 2 3 25 25 H 1.09004 * 109.47191 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47130 * 119.99757 * 1 2 3 27 27 H 0.96999 * 119.99617 * 359.72228 * 4 2 1 28 28 H 1.08995 * 109.47469 * 299.72396 * 5 4 2 29 29 H 1.09003 * 109.47168 * 59.72426 * 5 4 2 30 30 H 0.97006 * 120.00391 * 354.81649 * 8 6 5 31 31 H 1.09002 * 109.46840 * 67.72626 * 10 9 8 32 32 H 1.08996 * 109.46749 * 187.72459 * 10 9 8 33 33 H 0.96997 * 120.00448 * 354.96896 * 11 10 9 34 34 H 0.97000 * 119.99756 * 180.02562 * 15 14 12 35 35 H 1.09004 * 110.75491 * 37.58371 * 20 9 8 36 36 H 1.09004 * 110.75466 * 160.95086 * 20 9 8 37 37 H 1.08998 * 110.49180 * 203.38015 * 21 20 9 38 38 H 1.09000 * 110.48808 * 80.73296 * 21 20 9 39 39 H 1.09002 * 110.03214 * 264.31929 * 22 21 20 40 40 H 1.08998 * 110.03639 * 142.89448 * 22 21 20 41 41 H 1.08999 * 110.03934 * 240.71648 * 23 22 21 42 42 H 1.08998 * 110.03177 * 119.28603 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 0.0061 7 8 3.3601 -3.5098 0.0101 8 7 5.4732 -2.8343 0.0082 9 6 5.9625 -4.2099 0.1288 10 6 5.4432 -4.8505 1.4177 11 7 5.7512 -3.9793 2.5544 12 6 5.2910 -4.2966 3.8045 13 1 4.7007 -5.1888 3.9523 14 6 5.5833 -3.4714 4.8819 15 7 6.3032 -2.3843 4.7018 16 14 4.9551 -3.9038 6.5870 17 1 5.4937 -5.2271 6.9922 18 1 5.4014 -2.8706 7.5558 19 1 3.4712 -3.9579 6.5689 20 6 7.5105 -4.2400 0.0907 21 6 7.8170 -4.1487 -1.4248 22 6 6.7167 -5.0046 -2.0855 23 6 5.5376 -5.0435 -1.0977 24 1 -0.3634 -0.5137 0.8900 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 1.6958 -2.0072 0.0032 28 1 4.0096 -0.6571 -0.8919 29 1 4.0089 -0.6497 0.8881 30 1 6.1031 -2.1007 -0.0701 31 1 4.3641 -4.9869 1.3463 32 1 5.9231 -5.8185 1.5611 33 1 6.2811 -3.1778 2.4216 34 1 6.5078 -1.8079 5.4547 35 1 7.9268 -3.3836 0.6213 36 1 7.8891 -5.1742 0.5057 37 1 8.8025 -4.5617 -1.6403 38 1 7.7526 -3.1154 -1.7655 39 1 7.0865 -6.0140 -2.2656 40 1 6.4024 -4.5488 -3.0244 41 1 5.3350 -6.0718 -0.7983 42 1 4.6510 -4.6065 -1.5571 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495124745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:02 Heat of formation + Delta-G solvation = -98.697149 kcal Electronic energy + Delta-G solvation = -23311.116225 eV Core-core repulsion = 19903.743275 eV Total energy + Delta-G solvation = -3407.372950 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56556 -40.47875 -38.82731 -36.19561 -35.47039 -34.48224 -33.05994 -31.37923 -29.91497 -29.62535 -27.76267 -26.23438 -23.99468 -22.26802 -21.61244 -21.34391 -20.37512 -19.14271 -18.73208 -17.57948 -17.13356 -16.92934 -16.85947 -16.41816 -16.13718 -15.66876 -15.55823 -15.07943 -14.88533 -14.44594 -14.19169 -14.16816 -13.78058 -13.65926 -13.32685 -13.18998 -12.94339 -12.80550 -12.51055 -12.38241 -12.21359 -12.07905 -11.91283 -11.76636 -11.66401 -11.27477 -11.09411 -11.03893 -10.68312 -10.26785 -9.92900 -8.95759 -7.95754 -5.21713 1.43893 1.45967 1.52148 1.54042 1.63427 1.90361 2.51975 2.56122 3.36708 3.49517 3.68666 3.71971 3.92344 3.97151 4.18869 4.27584 4.37100 4.42436 4.54427 4.55978 4.61562 4.66218 4.70526 4.84702 4.89314 4.94597 5.04948 5.09492 5.14658 5.17686 5.26267 5.31787 5.36166 5.46228 5.53033 5.71631 6.26602 6.48179 6.56760 7.16529 7.24179 7.34464 8.09600 8.37157 9.26748 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.007097 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.877229 B = 3944.327169 C = 6273.929604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.505 3.495 3 O -0.598 6.598 4 N -0.713 5.713 5 C 0.102 3.898 6 C 0.519 3.481 7 O -0.561 6.561 8 N -0.695 5.695 9 C 0.171 3.829 10 C 0.147 3.853 11 N -0.729 5.729 12 C -0.242 4.242 13 H 0.064 0.936 14 C -0.069 4.069 15 N -0.963 5.963 16 Si 0.966 3.034 17 H -0.278 1.278 18 H -0.293 1.293 19 H -0.284 1.284 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.118 4.118 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.416 0.584 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.410 0.590 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.377 0.623 34 H 0.250 0.750 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 -0.822 -16.419 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.295 3.705 3 O -0.479 6.479 4 N -0.368 5.368 5 C -0.026 4.026 6 C 0.305 3.695 7 O -0.440 6.440 8 N -0.346 5.346 9 C 0.085 3.915 10 C 0.019 3.981 11 N -0.372 5.372 12 C -0.374 4.374 13 H 0.082 0.918 14 C -0.261 4.261 15 N -0.613 5.613 16 Si 0.795 3.205 17 H -0.204 1.204 18 H -0.219 1.219 19 H -0.211 1.211 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.157 4.157 24 H 0.122 0.878 25 H 0.115 0.885 26 H 0.133 0.867 27 H 0.255 0.745 28 H 0.131 0.869 29 H 0.101 0.899 30 H 0.246 0.754 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.210 0.790 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.618 -0.876 -16.288 16.708 hybrid contribution 0.002 0.071 1.447 1.449 sum -3.616 -0.805 -14.841 15.296 Atomic orbital electron populations 1.21919 0.87540 1.06386 1.06389 1.21669 0.92547 0.82198 0.74136 1.90697 1.72180 1.32857 1.52156 1.45824 1.05923 1.10230 1.74819 1.21011 0.82890 0.93960 1.04708 1.20453 0.83081 0.90838 0.75127 1.90621 1.55943 1.46514 1.50940 1.45645 1.06334 1.09316 1.73328 1.21341 0.94863 0.81416 0.93878 1.21119 0.97481 0.92877 0.86592 1.42254 1.63635 1.27922 1.03342 1.19484 1.25689 1.05630 0.86631 0.91826 1.25404 1.01828 0.97648 1.01256 1.69767 1.44670 1.15880 1.31029 0.85328 0.77802 0.77049 0.80295 1.20421 1.21913 1.21087 1.22697 0.91747 1.02891 0.98189 1.22368 0.99262 1.00801 0.92774 1.22105 0.94348 1.00934 0.97871 1.22376 0.99186 0.99481 0.94642 0.87803 0.88486 0.86665 0.74522 0.86856 0.89902 0.75432 0.96223 0.96246 0.79029 0.94083 0.91463 0.90428 0.89854 0.90702 0.90685 0.90952 0.91585 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.32 71.24 0.74 -1.96 16 2 C 0.51 13.76 7.94 87.66 0.70 14.45 16 3 O -0.60 -21.41 17.09 -3.04 -0.05 -21.46 16 4 N -0.71 -19.45 5.53 -466.79 -2.58 -22.03 16 5 C 0.10 2.95 6.16 85.63 0.53 3.48 16 6 C 0.52 16.69 7.14 87.66 0.63 17.31 16 7 O -0.56 -20.86 12.62 -3.04 -0.04 -20.89 16 8 N -0.70 -20.40 4.54 -418.07 -1.90 -22.30 16 9 C 0.17 5.28 0.40 4.68 0.00 5.28 16 10 C 0.15 6.12 4.75 86.38 0.41 6.53 16 11 N -0.73 -36.68 5.31 -343.44 -1.82 -38.50 16 12 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 13 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 14 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 15 N -0.96 -58.29 13.06 21.65 0.28 -58.01 16 16 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 19 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 20 C -0.12 -3.09 5.66 31.88 0.18 -2.91 16 21 C -0.11 -2.16 6.79 31.67 0.22 -1.94 16 22 C -0.12 -2.21 6.80 31.32 0.21 -2.00 16 23 C -0.12 -3.11 5.67 31.32 0.18 -2.93 16 24 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.53 8.12 -2.38 -0.02 1.51 16 26 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.42 10.70 7.44 -92.71 -0.69 10.01 16 28 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.41 10.13 8.49 -92.70 -0.79 9.34 16 31 H 0.02 0.92 6.53 -2.39 -0.02 0.91 16 32 H 0.02 0.82 8.02 -2.39 -0.02 0.81 16 33 H 0.38 19.52 7.27 -92.71 -0.67 18.85 16 34 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.07 1.90 8.09 -2.38 -0.02 1.88 16 36 H 0.08 2.15 7.97 -2.38 -0.02 2.13 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.79 7.84 -2.39 -0.02 1.78 16 42 H 0.06 1.81 6.55 -2.39 -0.02 1.80 16 Total: -1.00 -74.14 343.73 -0.10 -74.24 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -1.11 Total: 41.06 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 5.09 Total: 18.83 kcal Atomic # 7 Polarization: -134.82 SS G_CDS: -6.02 Total: -140.84 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.09 Total: -42.36 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -74.14 -0.10 -74.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495124745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.456 kcal (2) G-P(sol) polarization free energy of solvation -74.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds