Wall clock time and date at job start Tue Mar 31 2020 02:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53003 * 109.46853 * 120.00461 * 2 1 3 5 5 N 1.46499 * 109.46708 * 294.99623 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 15 15 N 1.46497 * 109.47391 * 64.99897 * 14 2 1 16 16 C 1.34774 * 120.00109 * 179.97438 * 15 14 2 17 17 O 1.21277 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99623 * 180.02562 * 16 15 14 19 19 N 1.46503 * 109.46707 * 179.97438 * 18 16 15 20 20 C 1.34784 * 119.99843 * 179.97438 * 19 18 16 21 21 O 1.21278 * 119.99998 * 0.02562 * 20 19 18 22 22 C 1.50694 * 119.99785 * 180.02562 * 20 19 18 23 23 C 1.53000 * 117.50018 * 248.62184 * 22 20 19 24 24 C 1.52994 * 60.00307 * 252.51495 * 23 22 20 25 25 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 26 26 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47478 * 299.99935 * 1 2 3 28 28 H 1.08998 * 109.46692 * 175.00125 * 4 2 1 29 29 H 1.08994 * 109.47584 * 54.99989 * 4 2 1 30 30 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 31 31 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47203 * 185.00287 * 14 2 1 33 33 H 1.08997 * 109.47065 * 304.99977 * 14 2 1 34 34 H 0.97005 * 119.99459 * 0.02562 * 15 14 2 35 35 H 1.08996 * 109.47454 * 299.99873 * 18 16 15 36 36 H 1.09005 * 109.47136 * 60.00629 * 18 16 15 37 37 H 0.96998 * 120.00347 * 359.97438 * 19 18 16 38 38 H 1.08997 * 115.55350 * 34.33105 * 22 20 19 39 39 H 1.09000 * 117.50153 * 0.02562 * 23 22 20 40 40 H 1.09008 * 117.49868 * 145.02069 * 23 22 20 41 41 H 1.09005 * 117.50054 * 252.51237 * 24 23 22 42 42 H 1.08991 * 117.52304 * 107.48173 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0018 -0.4204 3.6855 7 1 2.5628 -1.3378 3.7864 8 6 1.6395 0.2994 4.8157 9 7 0.9605 1.4201 4.6925 10 14 2.1168 -0.3218 6.5115 11 1 3.4421 0.2329 6.8870 12 1 1.0996 0.1127 7.5023 13 1 2.1881 -1.8050 6.4933 14 6 2.0400 -0.7212 -1.2493 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4131 -3.6659 17 8 2.6265 -1.4432 -3.7792 18 6 1.5982 0.3656 -4.8932 19 7 2.0876 -0.3245 -6.0893 20 6 1.8472 0.1919 -7.3109 21 8 1.2263 1.2280 -7.4199 22 6 2.3500 -0.5182 -8.5413 23 6 3.4682 0.1560 -9.3387 24 6 2.0450 0.1185 -9.8986 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.1262 -0.7996 1.2055 29 1 1.6054 -1.7199 1.2951 30 1 1.1482 0.8590 2.3517 31 1 0.7075 1.9234 5.4823 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 1.1489 0.8595 -2.3517 35 1 0.5120 0.4439 -4.9372 36 1 2.0330 1.3641 -4.8469 37 1 2.5845 -1.1529 -6.0022 38 1 2.3567 -1.6068 -8.4861 39 1 3.8406 1.1130 -8.9732 40 1 4.2110 -0.4890 -9.8082 41 1 1.8512 -0.5512 -10.7366 42 1 1.4802 1.0507 -9.9017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495625136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:42 Heat of formation + Delta-G solvation = -48.248741 kcal Electronic energy + Delta-G solvation = -21221.140052 eV Core-core repulsion = 17815.954709 eV Total energy + Delta-G solvation = -3405.185343 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.57371 -39.65398 -37.05601 -36.53041 -34.76881 -34.45068 -32.60887 -30.23890 -28.86625 -26.45500 -25.34131 -24.00962 -22.84541 -22.42007 -20.85265 -20.54825 -19.90316 -18.23742 -17.24276 -16.84268 -16.54485 -16.22095 -15.70333 -15.47137 -14.90997 -14.77552 -14.38427 -14.21132 -13.72418 -13.51225 -13.17588 -13.00681 -12.89996 -12.58295 -12.32354 -12.09540 -11.97946 -11.10694 -11.06497 -10.96042 -10.95025 -10.76897 -10.62605 -10.49926 -10.28512 -10.21652 -10.00732 -9.70451 -9.54300 -9.20411 -8.90418 -6.95356 -5.79561 -3.08204 2.11510 2.32862 2.48093 3.16915 3.42265 3.44316 3.47599 3.49120 4.25340 4.35071 4.44609 4.46585 4.56692 4.71950 4.96047 4.97513 5.01299 5.14796 5.17543 5.31871 5.34591 5.51285 5.54977 5.69895 5.73695 5.86469 5.89733 5.95093 6.04673 6.16975 6.30495 6.36633 6.60692 6.72223 6.81427 7.12865 7.24726 7.67988 7.84367 7.91407 8.39436 9.50785 10.07653 10.42324 11.43341 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.060735 B = 0.002104 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.907643 B =13307.643934 C =13528.339416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.717 5.717 16 C 0.507 3.493 17 O -0.541 6.541 18 C 0.099 3.901 19 N -0.714 5.714 20 C 0.545 3.455 21 O -0.542 6.542 22 C -0.195 4.195 23 C -0.152 4.152 24 C -0.147 4.147 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.384 0.616 31 H 0.255 0.745 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.404 0.596 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.414 0.586 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 -2.686 -26.823 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.003 3.997 15 N -0.369 5.369 16 C 0.292 3.708 17 O -0.419 6.419 18 C -0.029 4.029 19 N -0.369 5.369 20 C 0.332 3.668 21 O -0.420 6.420 22 C -0.217 4.217 23 C -0.189 4.189 24 C -0.184 4.184 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.218 0.782 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.239 0.761 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.252 0.748 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.775 -2.801 -26.794 26.998 hybrid contribution 0.048 -0.075 1.253 1.256 sum 1.824 -2.877 -25.541 25.767 Atomic orbital electron populations 1.21802 0.94577 1.01988 1.01604 1.21566 0.96788 1.00562 0.94101 0.90414 1.20571 0.96614 0.94219 0.85365 1.42334 1.66913 1.27718 1.00574 1.19235 1.28824 1.05391 0.83657 0.91143 1.24743 1.01025 0.97353 0.97900 1.69654 1.43732 1.16331 1.28548 0.86172 0.77598 0.78010 0.84308 1.21721 1.21763 1.20752 1.21479 1.00302 0.95287 0.82655 1.45978 1.57178 1.27990 1.05737 1.20434 0.79684 0.85763 0.84929 1.90703 1.40271 1.24511 1.86431 1.21084 1.01643 0.96703 0.83457 1.45630 1.58018 1.28745 1.04465 1.19668 0.78976 0.84555 0.83608 1.90709 1.40672 1.23858 1.86721 1.22159 1.07507 1.00329 0.91656 1.22961 0.91902 1.02366 1.01712 1.22970 0.98449 1.03270 0.93749 0.93861 0.92786 0.91054 0.96128 0.95982 0.78189 0.93505 0.91112 0.91105 0.76066 0.88198 0.88231 0.74835 0.85602 0.88156 0.87618 0.87801 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.94 37.16 0.33 -1.66 16 2 C -0.11 -1.61 2.46 -90.62 -0.22 -1.84 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 5 N -0.73 -17.99 5.33 -59.91 -0.32 -18.31 16 6 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 7 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 10 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.13 1.59 5.06 -4.04 -0.02 1.57 16 15 N -0.72 -7.34 5.28 -60.30 -0.32 -7.65 16 16 C 0.51 5.51 7.90 -10.99 -0.09 5.43 16 17 O -0.54 -7.63 15.67 5.56 0.09 -7.54 16 18 C 0.10 0.87 6.15 -5.19 -0.03 0.84 16 19 N -0.71 -6.56 5.53 -61.47 -0.34 -6.90 16 20 C 0.55 5.46 7.61 -10.99 -0.08 5.38 16 21 O -0.54 -7.20 16.26 5.56 0.09 -7.11 16 22 C -0.20 -1.38 6.19 -91.77 -0.57 -1.95 16 23 C -0.15 -0.89 10.23 -26.73 -0.27 -1.17 16 24 C -0.15 -0.94 10.04 -26.73 -0.27 -1.21 16 25 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.38 9.84 6.85 -40.82 -0.28 9.56 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.40 3.25 7.66 -40.82 -0.31 2.94 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.41 3.59 7.44 -40.82 -0.30 3.29 16 38 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.43 8.14 -51.92 -0.42 0.00 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.11 0.85 7.67 -51.93 -0.40 0.45 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -33.79 355.55 -7.89 -41.68 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.66 Total: 9.23 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.49 Total: 1.15 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.25 Total: -60.04 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.18 Total: -14.65 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.79 -7.89 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495625136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.565 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds