Wall clock time and date at job start Tue Mar 31 2020 02:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53003 * 109.46853 * 120.00461 * 2 1 3 5 5 N 1.46499 * 109.46708 * 294.99623 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 15 15 N 1.46497 * 109.47391 * 64.99897 * 14 2 1 16 16 C 1.34774 * 120.00109 * 179.97438 * 15 14 2 17 17 O 1.21277 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99623 * 180.02562 * 16 15 14 19 19 N 1.46503 * 109.46707 * 179.97438 * 18 16 15 20 20 C 1.34784 * 119.99843 * 179.97438 * 19 18 16 21 21 O 1.21278 * 119.99998 * 0.02562 * 20 19 18 22 22 C 1.50694 * 119.99785 * 180.02562 * 20 19 18 23 23 C 1.53000 * 117.50018 * 248.62184 * 22 20 19 24 24 C 1.52994 * 60.00307 * 252.51495 * 23 22 20 25 25 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 26 26 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47478 * 299.99935 * 1 2 3 28 28 H 1.08998 * 109.46692 * 175.00125 * 4 2 1 29 29 H 1.08994 * 109.47584 * 54.99989 * 4 2 1 30 30 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 31 31 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47203 * 185.00287 * 14 2 1 33 33 H 1.08997 * 109.47065 * 304.99977 * 14 2 1 34 34 H 0.97005 * 119.99459 * 0.02562 * 15 14 2 35 35 H 1.08996 * 109.47454 * 299.99873 * 18 16 15 36 36 H 1.09005 * 109.47136 * 60.00629 * 18 16 15 37 37 H 0.96998 * 120.00347 * 359.97438 * 19 18 16 38 38 H 1.08997 * 115.55350 * 34.33105 * 22 20 19 39 39 H 1.09000 * 117.50153 * 0.02562 * 23 22 20 40 40 H 1.09008 * 117.49868 * 145.02069 * 23 22 20 41 41 H 1.09005 * 117.50054 * 252.51237 * 24 23 22 42 42 H 1.08991 * 117.52304 * 107.48173 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0018 -0.4204 3.6855 7 1 2.5628 -1.3378 3.7864 8 6 1.6395 0.2994 4.8157 9 7 0.9605 1.4201 4.6925 10 14 2.1168 -0.3218 6.5115 11 1 3.4421 0.2329 6.8870 12 1 1.0996 0.1127 7.5023 13 1 2.1881 -1.8050 6.4933 14 6 2.0400 -0.7212 -1.2493 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4131 -3.6659 17 8 2.6265 -1.4432 -3.7792 18 6 1.5982 0.3656 -4.8932 19 7 2.0876 -0.3245 -6.0893 20 6 1.8472 0.1919 -7.3109 21 8 1.2263 1.2280 -7.4199 22 6 2.3500 -0.5182 -8.5413 23 6 3.4682 0.1560 -9.3387 24 6 2.0450 0.1185 -9.8986 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.1262 -0.7996 1.2055 29 1 1.6054 -1.7199 1.2951 30 1 1.1482 0.8590 2.3517 31 1 0.7075 1.9234 5.4823 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 1.1489 0.8595 -2.3517 35 1 0.5120 0.4439 -4.9372 36 1 2.0330 1.3641 -4.8469 37 1 2.5845 -1.1529 -6.0022 38 1 2.3567 -1.6068 -8.4861 39 1 3.8406 1.1130 -8.9732 40 1 4.2110 -0.4890 -9.8082 41 1 1.8512 -0.5512 -10.7366 42 1 1.4802 1.0507 -9.9017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495625136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:41 Heat of formation + Delta-G solvation = -73.474428 kcal Electronic energy + Delta-G solvation = -21222.233920 eV Core-core repulsion = 17815.954709 eV Total energy + Delta-G solvation = -3406.279211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39161 -40.51164 -38.31431 -37.14563 -36.05658 -35.49463 -34.16849 -31.99948 -29.76305 -27.68366 -26.86341 -24.94124 -24.02198 -23.29335 -21.77699 -21.36840 -21.09007 -19.29526 -18.80100 -17.76817 -17.45062 -17.08204 -16.82484 -16.31449 -16.28332 -15.77842 -15.53609 -15.43368 -15.09177 -14.81414 -14.37124 -14.19919 -13.82558 -13.57297 -13.53803 -13.40722 -12.95549 -12.81037 -12.43052 -12.19083 -12.16972 -12.00262 -11.73164 -11.66034 -11.55309 -11.47333 -11.14197 -11.02763 -10.94395 -10.33210 -10.13181 -8.99410 -7.95797 -5.23937 1.38644 1.46470 1.47725 1.48959 1.57443 1.70052 2.37043 2.56733 2.92278 3.38054 3.53851 3.71244 3.74552 3.87173 3.96325 3.99213 4.07892 4.20734 4.28863 4.34420 4.35387 4.54703 4.71172 4.75567 4.76355 4.92052 4.94042 5.02837 5.04812 5.13116 5.20287 5.25168 5.28364 5.38903 5.47961 5.50160 6.26910 6.38994 6.42033 7.05674 7.11162 7.33862 8.09569 8.33160 9.27555 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.060735 B = 0.002104 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.907643 B =13307.643934 C =13528.339416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.079 0.921 4 C 0.156 3.844 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.074 0.926 8 C -0.075 4.075 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.271 1.271 14 C 0.139 3.861 15 N -0.708 5.708 16 C 0.512 3.488 17 O -0.573 6.573 18 C 0.102 3.898 19 N -0.711 5.711 20 C 0.541 3.459 21 O -0.581 6.581 22 C -0.204 4.204 23 C -0.144 4.144 24 C -0.149 4.149 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.020 0.980 29 H 0.022 0.978 30 H 0.376 0.624 31 H 0.251 0.749 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.417 0.583 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.417 0.583 38 H 0.148 0.852 39 H 0.089 0.911 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -3.535 -28.128 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.097 0.903 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.379 4.379 7 H 0.092 0.908 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.196 1.196 14 C 0.015 3.985 15 N -0.360 5.360 16 C 0.299 3.701 17 O -0.453 6.453 18 C -0.025 4.025 19 N -0.365 5.365 20 C 0.330 3.670 21 O -0.461 6.461 22 C -0.225 4.225 23 C -0.181 4.181 24 C -0.186 4.186 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.209 0.791 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.255 0.745 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.256 0.744 38 H 0.166 0.834 39 H 0.108 0.892 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.248 -3.673 -28.118 28.446 hybrid contribution -0.076 0.163 1.605 1.616 sum 2.172 -3.510 -26.513 26.832 Atomic orbital electron populations 1.21743 0.93934 1.01971 1.01793 1.21344 0.97117 1.00139 0.92824 0.90263 1.20740 0.96589 0.94161 0.85643 1.42516 1.66772 1.27868 1.01369 1.19633 1.27888 1.05238 0.85096 0.90799 1.25546 1.01774 0.97874 1.01532 1.69800 1.45307 1.17603 1.29121 0.85150 0.76945 0.77953 0.79769 1.21448 1.22131 1.19564 1.21172 0.99787 0.95053 0.82536 1.45808 1.57054 1.28221 1.04920 1.20688 0.78835 0.85263 0.85338 1.90695 1.41760 1.26010 1.86863 1.21112 1.02408 0.96633 0.82341 1.45673 1.57642 1.28739 1.04460 1.20187 0.78273 0.84133 0.84452 1.90689 1.42558 1.25623 1.87267 1.22266 1.08431 1.01269 0.90529 1.23056 0.92057 1.02141 1.00833 1.23029 0.98642 1.02862 0.94103 0.90451 0.92904 0.94028 0.96160 0.96024 0.79094 0.93985 0.91720 0.91382 0.74527 0.87002 0.87191 0.74437 0.83426 0.89250 0.85205 0.85535 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.94 71.98 0.64 -3.02 16 2 C -0.10 -2.66 2.46 -10.79 -0.03 -2.68 16 3 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.16 5.93 5.65 86.38 0.49 6.42 16 5 N -0.74 -36.74 5.33 -343.46 -1.83 -38.57 16 6 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 7 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 8 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 9 N -0.97 -58.50 13.06 21.65 0.28 -58.22 16 10 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 14 C 0.14 3.28 5.06 86.38 0.44 3.72 16 15 N -0.71 -12.98 5.28 -463.07 -2.45 -15.43 16 16 C 0.51 10.24 7.90 87.66 0.69 10.93 16 17 O -0.57 -15.38 15.67 -3.02 -0.05 -15.43 16 18 C 0.10 1.63 6.15 85.63 0.53 2.16 16 19 N -0.71 -12.12 5.53 -466.78 -2.58 -14.70 16 20 C 0.54 10.33 7.61 87.65 0.67 11.00 16 21 O -0.58 -15.25 16.26 -3.02 -0.05 -15.30 16 22 C -0.20 -2.56 6.19 -11.54 -0.07 -2.63 16 23 C -0.14 -1.44 10.23 30.59 0.31 -1.12 16 24 C -0.15 -1.69 10.04 30.59 0.31 -1.38 16 25 H 0.08 1.52 7.18 -2.38 -0.02 1.51 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.37 7.18 -2.39 -0.02 1.36 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.38 19.57 6.85 -92.70 -0.63 18.94 16 31 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.42 5.60 7.66 -92.70 -0.71 4.89 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.42 6.67 7.44 -92.71 -0.69 5.98 16 38 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.09 1.38 7.67 -2.39 -0.02 1.36 16 Total: -1.00 -72.73 355.55 -0.35 -73.08 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.99 Total: 29.90 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.28 Total: 6.73 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -6.57 Total: -126.91 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.10 Total: -30.73 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -72.73 -0.35 -73.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495625136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.394 kcal (2) G-P(sol) polarization free energy of solvation -72.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds