Wall clock time and date at job start Tue Mar 31 2020 02:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47219 * 2 1 4 4 C 1.52994 * 109.47565 * 239.99552 * 2 1 3 5 5 N 1.46495 * 109.47640 * 185.00168 * 4 2 1 6 6 C 1.36933 * 120.00477 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99930 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00553 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99460 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00250 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47532 * 60.00004 * 10 8 6 12 12 H 1.48500 * 109.47257 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47127 * 299.99772 * 10 8 6 14 14 N 1.46506 * 109.46698 * 119.99794 * 2 1 3 15 15 C 1.46498 * 120.00260 * 55.41485 * 14 2 1 16 16 C 1.34778 * 119.99946 * 235.41441 * 14 2 1 17 17 O 1.21275 * 120.00063 * 185.22517 * 16 14 2 18 18 C 1.50710 * 119.99896 * 5.21783 * 16 14 2 19 19 H 1.09001 * 110.43125 * 318.44898 * 18 16 14 20 20 C 1.54627 * 110.48437 * 195.90712 * 18 16 14 21 21 C 1.54486 * 101.79545 * 266.10321 * 20 18 16 22 22 N 1.46825 * 105.44516 * 334.62864 * 21 20 18 23 23 C 1.46492 * 124.33401 * 197.00305 * 22 21 20 24 24 C 1.34418 * 111.31647 * 16.96711 * 22 21 20 25 25 O 1.21277 * 124.94742 * 179.65859 * 24 22 21 26 26 H 1.09002 * 109.46979 * 59.99979 * 1 2 3 27 27 H 1.08996 * 109.47504 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47453 * 300.00752 * 1 2 3 29 29 H 1.09006 * 109.47290 * 305.00874 * 4 2 1 30 30 H 1.09000 * 109.46946 * 64.99883 * 4 2 1 31 31 H 0.97002 * 119.99816 * 0.02562 * 5 4 2 32 32 H 0.96999 * 119.99705 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.46907 * 270.67460 * 15 14 2 34 34 H 1.08997 * 109.47179 * 30.67234 * 15 14 2 35 35 H 1.08996 * 109.46981 * 150.67142 * 15 14 2 36 36 H 1.09001 * 110.97397 * 24.23550 * 20 18 16 37 37 H 1.08998 * 110.97008 * 147.97005 * 20 18 16 38 38 H 1.08994 * 110.24495 * 93.60609 * 21 20 18 39 39 H 1.09010 * 110.24217 * 215.60687 * 21 20 18 40 40 H 1.08998 * 109.46958 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.47496 * 299.93256 * 23 22 21 42 42 H 1.08998 * 109.47720 * 59.93496 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.1839 -1.4380 -2.2069 7 1 3.6470 -1.8426 -3.0523 8 6 5.5674 -1.5382 -2.1511 9 7 6.2217 -1.0456 -1.1207 10 14 6.5001 -2.3731 -3.5375 11 1 6.2438 -1.6531 -4.8107 12 1 7.9548 -2.3502 -3.2396 13 1 6.0435 -3.7805 -3.6641 14 7 2.0182 -0.6906 1.1963 15 6 1.5834 -2.0605 1.4801 16 6 2.8675 -0.0657 2.0357 17 8 3.3458 -0.6677 2.9736 18 6 3.2228 1.3813 1.8088 19 1 3.3828 1.5719 0.7476 20 6 4.4805 1.7637 2.6231 21 6 3.8577 2.3348 3.9164 22 7 2.5223 2.8083 3.5314 23 6 1.7124 3.7336 4.3275 24 6 2.1387 2.2845 2.3544 25 8 1.0782 2.5044 1.8087 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6054 -1.7199 -1.2951 30 1 1.7517 -0.1584 -2.1369 31 1 3.9824 -0.4628 -0.4314 32 1 7.1883 -1.1159 -1.0815 33 1 0.6712 -2.0359 2.0762 34 1 1.3908 -2.5821 0.5426 35 1 2.3646 -2.5825 2.0325 36 1 5.0883 0.8848 2.8380 37 1 5.0655 2.5227 2.1038 38 1 3.7774 1.5543 4.6729 39 1 4.4591 3.1635 4.2905 40 1 0.7679 3.9214 3.8169 41 1 1.5149 3.2946 5.3055 42 1 2.2512 4.6727 4.4529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496138322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:00 Heat of formation + Delta-G solvation = -44.084699 kcal Electronic energy + Delta-G solvation = -24084.160142 eV Core-core repulsion = 20679.155366 eV Total energy + Delta-G solvation = -3405.004777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98483 -38.92544 -36.86719 -36.06122 -33.86883 -32.82852 -31.45429 -29.91759 -28.62617 -26.88790 -26.12360 -25.56341 -22.78574 -22.20370 -21.20976 -19.93995 -18.43526 -17.68415 -17.04647 -16.64800 -15.80335 -15.68367 -15.25626 -14.72928 -14.61680 -13.89437 -13.68501 -13.57905 -13.52611 -13.22435 -12.85045 -12.61868 -12.51087 -12.31812 -12.24552 -12.17345 -11.90176 -11.68576 -11.52742 -11.21861 -11.06696 -10.83260 -10.74462 -10.46304 -10.09547 -9.84735 -9.70175 -9.47068 -8.87726 -8.75980 -8.22254 -6.92472 -5.75505 -3.04448 2.41185 2.81064 3.06833 3.43594 3.45303 3.49187 3.50052 4.38749 4.51425 4.58992 4.72486 4.95624 5.13046 5.17687 5.19312 5.29734 5.49344 5.50916 5.55603 5.56962 5.60864 5.73422 5.78555 5.88715 6.03940 6.05714 6.10628 6.17568 6.21563 6.26052 6.40398 6.50090 6.55542 6.69825 6.94760 6.98560 7.69793 7.74214 8.11174 8.42281 8.48576 9.53813 10.09997 10.45136 11.47013 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.005558 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.303828 B = 5036.742754 C = 5675.575994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 H 0.095 0.905 4 C 0.138 3.862 5 N -0.728 5.728 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.011 4.011 9 N -0.931 5.931 10 Si 0.907 3.093 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.287 1.287 14 N -0.588 5.588 15 C 0.091 3.909 16 C 0.541 3.459 17 O -0.538 6.538 18 C -0.150 4.150 19 H 0.134 0.866 20 C -0.113 4.113 21 C 0.104 3.896 22 N -0.621 5.621 23 C 0.095 3.905 24 C 0.533 3.467 25 O -0.520 6.520 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.382 0.618 32 H 0.255 0.745 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.706 7.998 10.224 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.019 3.981 3 H 0.113 0.887 4 C 0.010 3.990 5 N -0.373 5.373 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.208 4.208 9 N -0.579 5.579 10 Si 0.738 3.262 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.214 1.214 14 N -0.319 5.319 15 C -0.051 4.051 16 C 0.328 3.672 17 O -0.416 6.416 18 C -0.175 4.175 19 H 0.151 0.849 20 C -0.151 4.151 21 C -0.019 4.019 22 N -0.356 5.356 23 C -0.047 4.047 24 C 0.320 3.680 25 O -0.396 6.396 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.216 0.784 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.034 7.749 10.332 15.762 hybrid contribution 0.807 -0.354 -0.643 1.091 sum -8.228 7.396 9.689 14.706 Atomic orbital electron populations 1.21985 0.94527 1.01793 1.02646 1.21606 0.94547 0.97241 0.84719 0.88719 1.21092 0.86959 0.97205 0.93747 1.42255 0.99660 1.70405 1.24971 1.19159 0.89393 1.29726 0.98963 0.91250 1.24724 0.96417 1.01599 0.98011 1.69647 1.07271 1.50881 1.30121 0.86272 0.78987 0.79315 0.81605 1.21304 1.21708 1.21354 1.47623 1.45547 1.14971 1.23805 1.21521 0.99453 0.82580 1.01567 1.19549 0.78276 0.87199 0.82224 1.90645 1.52636 1.66815 1.31492 1.22152 0.96780 0.93841 1.04706 0.84850 1.22544 0.95597 1.03201 0.93786 1.22193 0.82094 0.99262 0.98354 1.48122 1.19296 1.46569 1.21596 1.21539 0.95867 0.91993 0.95264 1.20303 0.86908 0.79967 0.80856 1.90707 1.24263 1.62360 1.62278 0.91481 0.92632 0.91900 0.95893 0.95036 0.78442 0.93472 0.93587 0.90815 0.90593 0.87284 0.89163 0.90387 0.90243 0.89977 0.92138 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.12 37.16 0.34 -1.83 16 2 C 0.12 2.11 2.37 -67.93 -0.16 1.95 16 3 H 0.09 1.69 4.68 -51.93 -0.24 1.45 16 4 C 0.14 2.77 5.60 -4.05 -0.02 2.75 16 5 N -0.73 -18.27 5.43 -59.91 -0.33 -18.59 16 6 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 7 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 9 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 10 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 N -0.59 -10.61 2.31 -173.93 -0.40 -11.01 16 15 C 0.09 1.51 9.38 59.85 0.56 2.07 16 16 C 0.54 10.22 6.31 -10.98 -0.07 10.15 16 17 O -0.54 -11.21 15.26 5.56 0.08 -11.12 16 18 C -0.15 -2.47 2.34 -91.78 -0.21 -2.68 16 19 H 0.13 2.31 6.61 -51.93 -0.34 1.97 16 20 C -0.11 -1.56 6.39 -25.10 -0.16 -1.72 16 21 C 0.10 1.18 7.33 -3.08 -0.02 1.16 16 22 N -0.62 -7.91 3.33 -180.24 -0.60 -8.51 16 23 C 0.10 0.90 11.14 59.84 0.67 1.57 16 24 C 0.53 8.38 7.23 -10.86 -0.08 8.30 16 25 O -0.52 -9.15 15.93 5.56 0.09 -9.06 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.73 7.57 -51.93 -0.39 0.34 16 28 H 0.06 0.94 7.74 -51.93 -0.40 0.54 16 29 H 0.02 0.46 7.03 -51.93 -0.37 0.10 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.38 10.06 6.82 -40.82 -0.28 9.78 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.18 6.78 -51.93 -0.35 0.83 16 35 H 0.08 1.36 7.34 -51.93 -0.38 0.98 16 36 H 0.11 1.69 7.25 -51.93 -0.38 1.31 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.08 0.84 7.53 -51.93 -0.39 0.45 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -33.60 339.52 -6.20 -39.80 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.45 Total: 8.72 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 0.59 Total: 14.43 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -0.60 Total: -65.26 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.17 Total: -20.18 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.60 -6.20 -39.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496138322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.287 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds