Wall clock time and date at job start Tue Mar 31 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.46793 * 2 1 4 4 C 1.53003 * 109.47124 * 240.00400 * 2 1 3 5 5 N 1.46504 * 109.46884 * 184.99813 * 4 2 1 6 6 C 1.36933 * 119.99637 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00343 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99798 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00139 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99720 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47201 * 90.00200 * 10 8 6 12 12 H 1.48508 * 109.46805 * 209.99833 * 10 8 6 13 13 H 1.48502 * 109.47196 * 329.99774 * 10 8 6 14 14 N 1.46496 * 109.47403 * 119.99955 * 2 1 3 15 15 C 1.46497 * 119.99862 * 60.00321 * 14 2 1 16 16 C 1.34777 * 120.00055 * 240.00033 * 14 2 1 17 17 O 1.21276 * 120.00170 * 0.02562 * 16 14 2 18 18 C 1.50708 * 119.99984 * 180.02562 * 16 14 2 19 19 H 1.09001 * 110.53507 * 57.38582 * 18 16 14 20 20 C 1.54625 * 110.48449 * 180.02562 * 18 16 14 21 21 C 1.54481 * 101.79703 * 143.45850 * 20 18 16 22 22 N 1.46825 * 105.44388 * 334.62720 * 21 20 18 23 23 C 1.46504 * 124.33333 * 197.00180 * 22 21 20 24 24 C 1.34414 * 111.31785 * 16.96546 * 22 21 20 25 25 O 1.21279 * 124.94846 * 179.65872 * 24 22 21 26 26 H 1.09004 * 109.47219 * 299.99630 * 1 2 3 27 27 H 1.08996 * 109.47697 * 60.00088 * 1 2 3 28 28 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46956 * 304.99545 * 4 2 1 30 30 H 1.08998 * 109.47286 * 64.99611 * 4 2 1 31 31 H 0.97000 * 120.00185 * 359.97438 * 5 4 2 32 32 H 0.96995 * 120.00061 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.47074 * 269.99663 * 15 14 2 34 34 H 1.08998 * 109.47352 * 29.99786 * 15 14 2 35 35 H 1.09003 * 109.47290 * 149.99844 * 15 14 2 36 36 H 1.09002 * 110.96933 * 261.59441 * 20 18 16 37 37 H 1.09003 * 110.97286 * 25.32007 * 20 18 16 38 38 H 1.08998 * 110.24929 * 93.60353 * 21 20 18 39 39 H 1.09000 * 110.24296 * 215.60139 * 21 20 18 40 40 H 1.08998 * 109.46641 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.46979 * 299.98314 * 23 22 21 42 42 H 1.08996 * 109.47131 * 59.98147 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1906 6 6 4.1838 -1.4377 -2.2073 7 1 3.6468 -1.8428 -3.0522 8 6 5.5673 -1.5368 -2.1520 9 7 6.2219 -1.0426 -1.1226 10 14 6.5001 -2.3716 -3.5386 11 1 6.8617 -1.3646 -4.5684 12 1 7.7359 -2.9940 -2.9994 13 1 5.6442 -3.4197 -4.1502 14 7 2.0183 -0.6906 1.1961 15 6 1.6645 -2.0931 1.4279 16 6 2.7932 -0.0356 2.0833 17 8 3.0858 1.1257 1.8916 18 6 3.2961 -0.7462 3.3135 19 1 3.8664 -1.6328 3.0366 20 6 4.1587 0.2061 4.1738 21 6 3.7792 -0.2312 5.6060 22 7 2.4375 -0.8169 5.4933 23 6 1.5359 -1.0409 6.6262 24 6 2.1423 -1.1203 4.2176 25 8 1.1021 -1.6206 3.8453 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 1.7516 -0.1582 -2.1370 31 1 3.9824 -0.4620 -0.4320 32 1 7.1885 -1.1122 -1.0837 33 1 0.7376 -2.1444 1.9993 34 1 1.5296 -2.5968 0.4707 35 1 2.4630 -2.5819 1.9862 36 1 5.2206 0.0473 3.9859 37 1 3.8848 1.2464 3.9981 38 1 4.4859 -0.9755 5.9729 39 1 3.7600 0.6320 6.2713 40 1 0.6069 -1.4851 6.2688 41 1 2.0099 -1.7146 7.3400 42 1 1.3202 -0.0896 7.1125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496138327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:08 Heat of formation + Delta-G solvation = -40.896507 kcal Electronic energy + Delta-G solvation = -23800.691489 eV Core-core repulsion = 20395.824963 eV Total energy + Delta-G solvation = -3404.866526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.98221 -38.96632 -36.76200 -36.03496 -33.90267 -32.97599 -31.58446 -30.00110 -27.96186 -26.88228 -26.35575 -25.54104 -23.07494 -22.32169 -20.81110 -19.81389 -18.35324 -17.36207 -17.07554 -16.84787 -16.49560 -15.72620 -15.10472 -14.82361 -14.53595 -13.91580 -13.68358 -13.53148 -13.36533 -13.06877 -12.88287 -12.66672 -12.56192 -12.39588 -12.18609 -12.13355 -11.95816 -11.65736 -11.57893 -11.36139 -11.02871 -10.81967 -10.70066 -10.36182 -10.00418 -9.76133 -9.64069 -9.40610 -8.89038 -8.82454 -8.03748 -6.85011 -5.69983 -2.98468 2.39398 2.76053 3.09454 3.45927 3.48123 3.51398 3.52763 4.24993 4.37327 4.63071 4.76676 4.89415 5.04669 5.08503 5.19343 5.31684 5.39826 5.44415 5.48885 5.57310 5.60997 5.65880 5.77550 5.89757 6.04643 6.10352 6.15157 6.21359 6.24326 6.29535 6.44136 6.50225 6.60995 6.81900 6.91587 7.10597 7.74112 7.85579 8.06190 8.48184 8.58348 9.59597 10.18913 10.54867 11.52552 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.005093 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.570966 B = 5496.077519 C = 6248.846747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.126 3.874 3 H 0.099 0.901 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.931 5.931 10 Si 0.906 3.094 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.582 5.582 15 C 0.085 3.915 16 C 0.537 3.463 17 O -0.539 6.539 18 C -0.146 4.146 19 H 0.136 0.864 20 C -0.117 4.117 21 C 0.102 3.898 22 N -0.624 5.624 23 C 0.095 3.905 24 C 0.530 3.470 25 O -0.516 6.516 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.022 0.978 30 H 0.028 0.972 31 H 0.386 0.614 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 -0.029 16.086 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.369 4.369 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.580 5.580 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.219 1.219 13 H -0.208 1.208 14 N -0.313 5.313 15 C -0.058 4.058 16 C 0.323 3.677 17 O -0.416 6.416 18 C -0.171 4.171 19 H 0.154 0.846 20 C -0.155 4.155 21 C -0.021 4.021 22 N -0.359 5.359 23 C -0.047 4.047 24 C 0.317 3.683 25 O -0.392 6.392 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.220 0.780 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.187 0.198 15.696 18.188 hybrid contribution 0.935 -0.559 -0.472 1.187 sum -8.252 -0.361 15.224 17.321 Atomic orbital electron populations 1.22025 0.95114 1.02183 1.01789 1.21393 0.93397 0.98352 0.84596 0.88342 1.21013 0.87034 0.96850 0.93626 1.42300 0.99729 1.70098 1.25094 1.19232 0.89453 1.29181 0.99055 0.91289 1.24727 0.96399 1.01787 0.98054 1.69684 1.07038 1.51030 1.30224 0.86210 0.79495 0.79001 0.81592 1.21784 1.21855 1.20849 1.47524 1.49391 1.12645 1.21745 1.21952 1.01476 0.80809 1.01530 1.19523 0.78212 0.86505 0.83485 1.90672 1.57812 1.16737 1.76388 1.22111 0.97596 1.02491 0.94867 0.84608 1.22607 1.00995 1.00928 0.90980 1.22201 0.82898 0.98386 0.98603 1.48148 1.17438 1.62920 1.07391 1.21545 0.94085 1.01264 0.87773 1.20466 0.87543 0.77241 0.83008 1.90684 1.27255 1.43757 1.77519 0.92734 0.91584 0.92307 0.96046 0.95405 0.77997 0.93643 0.90459 0.91535 0.92400 0.88235 0.88107 0.90771 0.90095 0.89899 0.92072 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.19 37.16 0.34 -1.91 16 2 C 0.13 2.35 2.80 -67.93 -0.19 2.16 16 3 H 0.10 2.04 6.90 -51.92 -0.36 1.68 16 4 C 0.14 3.04 5.50 -4.04 -0.02 3.02 16 5 N -0.73 -19.30 5.43 -59.90 -0.33 -19.63 16 6 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 10 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 N -0.58 -10.75 2.23 -173.93 -0.39 -11.14 16 15 C 0.09 1.41 7.81 59.85 0.47 1.88 16 16 C 0.54 10.20 6.74 -10.98 -0.07 10.13 16 17 O -0.54 -11.74 14.82 5.56 0.08 -11.65 16 18 C -0.15 -2.18 2.41 -91.78 -0.22 -2.41 16 19 H 0.14 1.97 7.30 -51.93 -0.38 1.59 16 20 C -0.12 -1.41 6.48 -25.10 -0.16 -1.57 16 21 C 0.10 0.91 7.35 -3.09 -0.02 0.88 16 22 N -0.62 -6.87 3.33 -180.24 -0.60 -7.48 16 23 C 0.10 0.78 11.14 59.85 0.67 1.45 16 24 C 0.53 7.56 7.18 -10.86 -0.08 7.49 16 25 O -0.52 -8.42 13.22 5.56 0.07 -8.35 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.82 7.67 -51.93 -0.40 0.42 16 29 H 0.02 0.45 6.88 -51.93 -0.36 0.09 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.39 11.01 7.06 -40.82 -0.29 10.72 16 32 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.08 1.24 5.98 -51.93 -0.31 0.93 16 34 H 0.07 1.12 6.53 -51.93 -0.34 0.78 16 35 H 0.06 0.93 6.19 -51.93 -0.32 0.61 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.10 1.37 7.00 -51.93 -0.36 1.01 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.77 7.53 -51.93 -0.39 0.38 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -35.02 335.40 -6.38 -41.40 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.43 Total: 8.43 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 0.46 Total: 13.62 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.59 Total: -66.26 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.16 Total: -20.00 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.02 -6.38 -41.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496138327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.502 kcal (2) G-P(sol) polarization free energy of solvation -35.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds