Wall clock time and date at job start Tue Mar 31 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.46793 * 2 1 4 4 C 1.53003 * 109.47124 * 240.00400 * 2 1 3 5 5 N 1.46504 * 109.46884 * 184.99813 * 4 2 1 6 6 C 1.36933 * 119.99637 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00343 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99798 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00139 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99720 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47201 * 90.00200 * 10 8 6 12 12 H 1.48508 * 109.46805 * 209.99833 * 10 8 6 13 13 H 1.48502 * 109.47196 * 329.99774 * 10 8 6 14 14 N 1.46496 * 109.47403 * 119.99955 * 2 1 3 15 15 C 1.46497 * 119.99862 * 60.00321 * 14 2 1 16 16 C 1.34777 * 120.00055 * 240.00033 * 14 2 1 17 17 O 1.21276 * 120.00170 * 0.02562 * 16 14 2 18 18 C 1.50708 * 119.99984 * 180.02562 * 16 14 2 19 19 H 1.09001 * 110.53507 * 57.38582 * 18 16 14 20 20 C 1.54625 * 110.48449 * 180.02562 * 18 16 14 21 21 C 1.54481 * 101.79703 * 143.45850 * 20 18 16 22 22 N 1.46825 * 105.44388 * 334.62720 * 21 20 18 23 23 C 1.46504 * 124.33333 * 197.00180 * 22 21 20 24 24 C 1.34414 * 111.31785 * 16.96546 * 22 21 20 25 25 O 1.21279 * 124.94846 * 179.65872 * 24 22 21 26 26 H 1.09004 * 109.47219 * 299.99630 * 1 2 3 27 27 H 1.08996 * 109.47697 * 60.00088 * 1 2 3 28 28 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46956 * 304.99545 * 4 2 1 30 30 H 1.08998 * 109.47286 * 64.99611 * 4 2 1 31 31 H 0.97000 * 120.00185 * 359.97438 * 5 4 2 32 32 H 0.96995 * 120.00061 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.47074 * 269.99663 * 15 14 2 34 34 H 1.08998 * 109.47352 * 29.99786 * 15 14 2 35 35 H 1.09003 * 109.47290 * 149.99844 * 15 14 2 36 36 H 1.09002 * 110.96933 * 261.59441 * 20 18 16 37 37 H 1.09003 * 110.97286 * 25.32007 * 20 18 16 38 38 H 1.08998 * 110.24929 * 93.60353 * 21 20 18 39 39 H 1.09000 * 110.24296 * 215.60139 * 21 20 18 40 40 H 1.08998 * 109.46641 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.46979 * 299.98314 * 23 22 21 42 42 H 1.08996 * 109.47131 * 59.98147 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1906 6 6 4.1838 -1.4377 -2.2073 7 1 3.6468 -1.8428 -3.0522 8 6 5.5673 -1.5368 -2.1520 9 7 6.2219 -1.0426 -1.1226 10 14 6.5001 -2.3716 -3.5386 11 1 6.8617 -1.3646 -4.5684 12 1 7.7359 -2.9940 -2.9994 13 1 5.6442 -3.4197 -4.1502 14 7 2.0183 -0.6906 1.1961 15 6 1.6645 -2.0931 1.4279 16 6 2.7932 -0.0356 2.0833 17 8 3.0858 1.1257 1.8916 18 6 3.2961 -0.7462 3.3135 19 1 3.8664 -1.6328 3.0366 20 6 4.1587 0.2061 4.1738 21 6 3.7792 -0.2312 5.6060 22 7 2.4375 -0.8169 5.4933 23 6 1.5359 -1.0409 6.6262 24 6 2.1423 -1.1203 4.2176 25 8 1.1021 -1.6206 3.8453 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 1.7516 -0.1582 -2.1370 31 1 3.9824 -0.4620 -0.4320 32 1 7.1885 -1.1122 -1.0837 33 1 0.7376 -2.1444 1.9993 34 1 1.5296 -2.5968 0.4707 35 1 2.4630 -2.5819 1.9862 36 1 5.2206 0.0473 3.9859 37 1 3.8848 1.2464 3.9981 38 1 4.4859 -0.9755 5.9729 39 1 3.7600 0.6320 6.2713 40 1 0.6069 -1.4851 6.2688 41 1 2.0099 -1.7146 7.3400 42 1 1.3202 -0.0896 7.1125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496138327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:08 Heat of formation + Delta-G solvation = -65.646019 kcal Electronic energy + Delta-G solvation = -23801.764709 eV Core-core repulsion = 20395.824963 eV Total energy + Delta-G solvation = -3405.939746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.14260 -40.29588 -38.10028 -37.33809 -35.80201 -34.17502 -33.17378 -31.77691 -28.97558 -27.78001 -27.65013 -27.39420 -24.65357 -23.84939 -22.04976 -21.00710 -19.75898 -19.11650 -18.60066 -17.98897 -17.70564 -17.03327 -16.63401 -16.26757 -15.87631 -15.36229 -15.22890 -14.98248 -14.70261 -14.32157 -14.16854 -14.05587 -13.69149 -13.63525 -13.41739 -13.32250 -13.19943 -13.03298 -12.90012 -12.78124 -12.63125 -12.50179 -12.14751 -12.01521 -11.82833 -11.73851 -11.02802 -10.95329 -10.77148 -9.72778 -9.50646 -9.00040 -7.93079 -5.23142 1.25588 1.46376 1.48855 1.56144 1.57081 1.96999 2.18356 2.55963 3.21040 3.29585 3.39474 3.63311 3.85905 3.92530 4.06165 4.12475 4.24875 4.33084 4.39426 4.42813 4.45771 4.67205 4.68765 4.72875 4.80173 4.88444 4.88964 4.91637 4.97299 5.03641 5.10519 5.13856 5.27345 5.47872 5.54954 5.63746 5.95900 6.27023 6.40486 7.03383 7.11999 7.33410 8.08019 8.33172 9.30295 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.005093 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.570966 B = 5496.077519 C = 6248.846747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.128 3.872 3 H 0.072 0.928 4 C 0.143 3.857 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.077 0.923 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.976 3.024 11 H -0.289 1.289 12 H -0.294 1.294 13 H -0.268 1.268 14 N -0.586 5.586 15 C 0.093 3.907 16 C 0.523 3.477 17 O -0.578 6.578 18 C -0.149 4.149 19 H 0.136 0.864 20 C -0.116 4.116 21 C 0.109 3.891 22 N -0.618 5.618 23 C 0.091 3.909 24 C 0.526 3.474 25 O -0.544 6.544 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.372 0.628 32 H 0.251 0.749 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.269 -0.950 17.071 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.090 0.910 4 C 0.016 3.984 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.095 0.905 8 C -0.266 4.266 9 N -0.619 5.619 10 Si 0.805 3.195 11 H -0.217 1.217 12 H -0.221 1.221 13 H -0.193 1.193 14 N -0.317 5.317 15 C -0.049 4.049 16 C 0.311 3.689 17 O -0.458 6.458 18 C -0.173 4.173 19 H 0.154 0.846 20 C -0.154 4.154 21 C -0.013 4.013 22 N -0.351 5.351 23 C -0.050 4.050 24 C 0.312 3.688 25 O -0.423 6.423 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.204 0.796 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.744 -0.739 16.700 19.349 hybrid contribution 1.056 -0.233 -0.760 1.321 sum -8.688 -0.972 15.940 18.180 Atomic orbital electron populations 1.21930 0.91723 1.03327 1.02841 1.21311 0.95884 0.96498 0.83851 0.91022 1.21177 0.84350 0.97741 0.95143 1.42493 1.01796 1.69895 1.24204 1.19654 0.90052 1.28595 0.99544 0.90505 1.25583 0.97389 1.03028 1.00628 1.69857 1.06956 1.52729 1.32315 0.85112 0.77912 0.78076 0.78443 1.21650 1.22055 1.19285 1.47694 1.49165 1.13330 1.21464 1.21946 1.01903 0.79692 1.01340 1.20278 0.77669 0.86396 0.84600 1.90636 1.59183 1.18470 1.77519 1.22138 0.98590 1.02713 0.93833 0.84646 1.22616 1.00879 0.99208 0.92732 1.22363 0.82198 1.00115 0.96646 1.48285 1.18440 1.61528 1.06874 1.21776 0.93279 1.02917 0.87018 1.20328 0.86876 0.77544 0.84058 1.90645 1.28047 1.45390 1.78213 0.92560 0.89657 0.91044 0.94816 0.94872 0.79619 0.94068 0.89565 0.91875 0.92315 0.87581 0.90035 0.88058 0.87335 0.91241 0.89472 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.19 71.98 0.66 -3.31 16 2 C 0.13 4.83 2.80 44.99 0.13 4.96 16 3 H 0.07 3.09 6.90 -2.38 -0.02 3.08 16 4 C 0.14 6.07 5.50 86.38 0.48 6.55 16 5 N -0.74 -39.94 5.43 -343.44 -1.87 -41.80 16 6 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 7 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 8 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 9 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 10 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 12 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 N -0.59 -22.07 2.23 -822.58 -1.84 -23.91 16 15 C 0.09 3.09 7.81 127.77 1.00 4.09 16 16 C 0.52 20.57 6.74 87.66 0.59 21.16 16 17 O -0.58 -26.45 14.82 -3.02 -0.04 -26.49 16 18 C -0.15 -4.48 2.41 -11.54 -0.03 -4.51 16 19 H 0.14 4.01 7.30 -2.39 -0.02 4.00 16 20 C -0.12 -2.76 6.48 31.65 0.20 -2.55 16 21 C 0.11 1.64 7.35 86.82 0.64 2.28 16 22 N -0.62 -12.30 3.33 -842.74 -2.81 -15.11 16 23 C 0.09 1.24 11.14 127.77 1.42 2.66 16 24 C 0.53 14.65 7.18 87.90 0.63 15.29 16 25 O -0.54 -17.57 13.22 -3.03 -0.04 -17.61 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 1.85 7.67 -2.39 -0.02 1.83 16 29 H 0.03 1.37 6.88 -2.39 -0.02 1.36 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.37 21.92 7.06 -92.71 -0.65 21.26 16 32 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.09 2.73 5.98 -2.38 -0.01 2.72 16 34 H 0.06 2.10 6.53 -2.39 -0.02 2.08 16 35 H 0.06 1.91 6.19 -2.39 -0.01 1.90 16 36 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 2.27 7.00 -2.39 -0.02 2.25 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.17 7.53 -2.39 -0.02 1.15 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -76.93 335.40 3.11 -73.82 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.37 Total: 33.34 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 7.03 Total: 29.34 kcal Atomic # 7 Polarization: -135.16 SS G_CDS: -6.23 Total: -141.40 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.08 Total: -44.11 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -76.93 3.11 -73.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496138327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.173 kcal (2) G-P(sol) polarization free energy of solvation -76.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds