Wall clock time and date at job start Tue Mar 31 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.52997 * 109.47377 * 90.00269 * 4 3 2 6 6 N 1.46497 * 109.47148 * 179.97438 * 5 4 3 7 7 C 1.36944 * 119.99836 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00081 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99772 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00448 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99893 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46963 * 90.00110 * 11 9 7 13 13 H 1.48501 * 109.47214 * 209.99836 * 11 9 7 14 14 H 1.48498 * 109.47378 * 329.99672 * 11 9 7 15 15 C 1.34773 * 119.99455 * 90.00023 * 3 2 1 16 16 O 1.21287 * 119.99667 * 179.97438 * 15 3 2 17 17 C 1.50702 * 120.00755 * 0.02562 * 15 3 2 18 18 C 1.52997 * 109.47266 * 180.02562 * 17 15 3 19 19 H 1.09002 * 110.21403 * 305.69728 * 18 17 15 20 20 C 1.54483 * 110.24329 * 183.77244 * 18 17 15 21 21 C 1.54859 * 101.65721 * 266.38660 * 20 18 17 22 22 C 1.51278 * 104.21121 * 335.19114 * 21 20 18 23 23 O 1.21282 * 124.94444 * 196.23750 * 22 21 20 24 24 N 1.34414 * 110.11675 * 16.26940 * 22 21 20 25 25 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 29 29 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 30 30 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 31 31 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 32 32 H 1.09006 * 109.46817 * 299.99710 * 5 4 3 33 33 H 1.08996 * 109.47652 * 59.99460 * 5 4 3 34 34 H 0.97006 * 120.00132 * 0.02562 * 6 5 4 35 35 H 0.96996 * 120.00186 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.46469 * 300.00239 * 17 15 3 37 37 H 1.09002 * 109.46873 * 59.99721 * 17 15 3 38 38 H 1.09004 * 110.97136 * 24.52866 * 20 18 17 39 39 H 1.08999 * 110.97285 * 148.29820 * 20 18 17 40 40 H 1.09004 * 110.46812 * 216.51491 * 21 20 18 41 41 H 1.08999 * 110.48799 * 93.88263 * 21 20 18 42 42 H 0.97002 * 124.35480 * 180.42925 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 0.9875 2.7931 -1.7103 6 7 1.2319 3.4842 -2.9787 7 6 0.2278 4.2020 -3.5719 8 1 -0.7441 4.2590 -3.1044 9 6 0.4592 4.8564 -4.7740 10 7 1.6438 4.7874 -5.3436 11 14 -0.9103 5.8361 -5.5827 12 1 -0.8688 7.2388 -5.0970 13 1 -0.7288 5.8171 -7.0565 14 1 -2.2219 5.2314 -5.2378 15 6 2.2429 2.0165 1.1672 16 8 2.6477 3.1598 1.1673 17 6 1.9923 1.3059 2.4724 18 6 2.3230 2.2435 3.6353 19 1 3.3387 2.6259 3.5337 20 6 2.1629 1.5027 4.9814 21 6 0.7066 1.8630 5.3655 22 6 0.4421 3.1637 4.6398 23 8 -0.4699 3.9241 4.8870 24 7 1.3645 3.3540 3.6808 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.0644 2.7985 -1.1383 31 1 2.5506 1.3452 -2.0283 32 1 0.1856 2.0665 -1.8407 33 1 0.6994 3.5198 -0.9507 34 1 2.1048 3.4327 -3.3988 35 1 1.8056 5.2450 -6.1834 36 1 0.9444 1.0114 2.5302 37 1 2.6229 0.4186 2.5299 38 1 2.2784 0.4267 4.8507 39 1 2.8672 1.8821 5.7217 40 1 0.6201 2.0028 6.4430 41 1 0.0193 1.0890 5.0239 42 1 1.3932 4.1261 3.0944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497466070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:48 Heat of formation + Delta-G solvation = -64.135130 kcal Electronic energy + Delta-G solvation = -22765.913084 eV Core-core repulsion = 19360.038855 eV Total energy + Delta-G solvation = -3405.874229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.84194 -39.59207 -36.88253 -36.14116 -34.57079 -31.95087 -31.47649 -30.82323 -30.39237 -27.80883 -25.86598 -23.62901 -23.42212 -21.69900 -21.22921 -20.59758 -19.14781 -17.69028 -17.20556 -17.02329 -16.43728 -15.83899 -15.47679 -14.96408 -14.55827 -14.07750 -14.00568 -13.94284 -13.56702 -13.41231 -13.35132 -13.11746 -12.93903 -12.91637 -12.71291 -12.22928 -11.99677 -11.54570 -11.39260 -11.26111 -11.18773 -10.91724 -10.87772 -10.58552 -10.10576 -9.99247 -9.81799 -9.66778 -9.25509 -8.85901 -8.59576 -6.92506 -5.75752 -3.04950 2.48283 2.63792 2.98597 3.28210 3.45529 3.50661 3.51984 4.00756 4.14178 4.33274 4.48769 4.62138 4.70491 4.75961 4.90155 5.00410 5.11193 5.15303 5.25951 5.29568 5.45536 5.49648 5.50530 5.60451 5.63591 5.66464 5.70077 5.80944 6.03595 6.03804 6.19991 6.55321 6.72532 6.77128 6.89573 7.00471 7.44944 7.71110 8.16185 8.21994 8.42891 9.53843 10.09740 10.44659 11.47162 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.003713 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.369687 B = 7539.506602 C = 8165.417807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.105 3.895 3 N -0.606 5.606 4 C 0.107 3.893 5 C 0.143 3.857 6 N -0.731 5.731 7 C -0.238 4.238 8 H 0.069 0.931 9 C -0.013 4.013 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.512 3.488 16 O -0.535 6.535 17 C -0.156 4.156 18 C 0.145 3.855 19 H 0.098 0.902 20 C -0.128 4.128 21 C -0.158 4.158 22 C 0.514 3.486 23 O -0.539 6.539 24 N -0.716 5.716 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -15.807 20.345 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.018 4.018 3 N -0.340 5.340 4 C -0.015 4.015 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.087 0.913 9 C -0.209 4.209 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.300 3.700 16 O -0.412 6.412 17 C -0.197 4.197 18 C 0.038 3.962 19 H 0.116 0.884 20 C -0.166 4.166 21 C -0.198 4.198 22 C 0.299 3.701 23 O -0.416 6.416 24 N -0.372 5.372 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 3.199 -14.819 20.498 25.496 hybrid contribution -0.498 0.710 -1.119 1.416 sum 2.701 -14.109 19.380 24.123 Atomic orbital electron populations 1.22324 0.95703 1.02185 1.03375 1.21597 0.94816 0.82342 1.03025 1.47973 1.65512 1.14099 1.06370 1.21729 0.99737 0.96863 0.83190 1.20972 0.94045 0.94203 0.89340 1.42220 1.13702 1.59952 1.21655 1.19202 0.92289 1.23122 1.02323 0.91255 1.24739 0.96969 1.01172 0.98030 1.69660 1.21010 1.47937 1.19635 0.86171 0.81190 0.80194 0.78540 1.21635 1.21715 1.20751 1.20497 0.77469 0.86784 0.85258 1.90720 1.45615 1.17606 1.87268 1.22286 1.04620 0.99929 0.92829 1.21381 0.94558 0.86746 0.93477 0.88389 1.22720 0.96301 1.01594 0.95961 1.22399 0.98083 0.96816 1.02524 1.20934 0.81086 0.87552 0.80484 1.90766 1.32056 1.50643 1.68146 1.46368 1.29852 1.24182 1.36757 0.92682 0.91071 0.91617 0.90020 0.90611 0.89734 0.90557 0.96239 0.96142 0.78305 0.93485 0.88414 0.87630 0.88880 0.89489 0.88082 0.87860 0.74058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.11 0.93 5.98 -4.04 -0.02 0.91 16 3 N -0.61 -7.76 2.47 -173.69 -0.43 -8.19 16 4 C 0.11 1.78 5.56 -4.05 -0.02 1.76 16 5 C 0.14 3.01 6.58 -4.04 -0.03 2.98 16 6 N -0.73 -19.17 5.60 -59.91 -0.34 -19.51 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 11 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.51 6.63 7.57 -10.99 -0.08 6.55 16 16 O -0.54 -9.11 14.61 5.55 0.08 -9.03 16 17 C -0.16 -1.21 3.86 -27.88 -0.11 -1.32 16 18 C 0.14 1.16 3.00 -67.01 -0.20 0.96 16 19 H 0.10 0.82 7.95 -51.93 -0.41 0.41 16 20 C -0.13 -0.61 6.72 -24.97 -0.17 -0.78 16 21 C -0.16 -1.09 6.86 -26.62 -0.18 -1.27 16 22 C 0.51 6.26 8.43 -10.86 -0.09 6.17 16 23 O -0.54 -9.19 18.03 5.56 0.10 -9.09 16 24 N -0.72 -8.19 5.49 -52.76 -0.29 -8.48 16 25 H 0.05 0.52 7.22 -51.93 -0.38 0.15 16 26 H 0.07 0.88 6.26 -51.93 -0.33 0.55 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 29 H 0.08 0.43 6.44 -51.93 -0.33 0.10 16 30 H 0.08 1.57 7.42 -51.93 -0.39 1.18 16 31 H 0.08 1.17 7.89 -51.93 -0.41 0.76 16 32 H 0.02 0.41 6.26 -51.93 -0.33 0.08 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.38 10.42 7.67 -40.82 -0.31 10.11 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.10 0.71 7.19 -51.93 -0.37 0.34 16 37 H 0.11 0.48 7.38 -51.93 -0.38 0.10 16 38 H 0.09 0.22 7.88 -51.93 -0.41 -0.19 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.42 5.69 8.27 -40.82 -0.34 5.35 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -36.87 343.00 -7.23 -44.10 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.45 Total: 7.98 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -0.77 Total: 7.11 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -0.33 Total: -64.21 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.18 Total: -18.12 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.87 -7.23 -44.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497466070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.035 kcal (2) G-P(sol) polarization free energy of solvation -36.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds