Wall clock time and date at job start Tue Mar 31 2020 03:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 120.00142 * 2 1 4 4 C 1.52998 * 109.46838 * 90.00476 * 3 2 1 5 5 C 1.52996 * 109.47100 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47182 * 179.97438 * 5 4 3 7 7 C 1.36938 * 120.00208 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99460 * 0.02562 * 7 6 5 9 9 C 1.38813 * 120.00414 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99584 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47170 * 270.00133 * 11 9 7 13 13 H 1.48495 * 109.47304 * 30.00230 * 11 9 7 14 14 H 1.48498 * 109.46932 * 150.00605 * 11 9 7 15 15 C 1.34774 * 119.99817 * 180.02562 * 2 1 3 16 16 O 1.21282 * 120.00131 * 179.97438 * 15 2 1 17 17 C 1.50695 * 120.00335 * 0.02562 * 15 2 1 18 18 H 1.08996 * 112.85309 * 55.86080 * 17 15 2 19 19 C 1.53788 * 113.61357 * 284.66681 * 17 15 2 20 20 C 1.53958 * 87.02050 * 220.04620 * 19 17 15 21 21 C 1.53784 * 113.61647 * 187.06105 * 17 15 2 22 22 H 1.09003 * 113.60952 * 254.52388 * 21 17 15 23 23 C 1.50698 * 113.61579 * 25.43081 * 21 17 15 24 24 N 1.34773 * 119.99609 * 248.11388 * 23 21 17 25 25 O 1.21278 * 119.99930 * 68.11346 * 23 21 17 26 26 H 1.09000 * 109.47281 * 89.99719 * 1 2 3 27 27 H 1.09000 * 109.47125 * 209.99489 * 1 2 3 28 28 H 1.09008 * 109.47050 * 329.99878 * 1 2 3 29 29 H 1.09002 * 109.47195 * 330.00350 * 3 2 1 30 30 H 1.08999 * 109.47281 * 209.99815 * 3 2 1 31 31 H 1.08993 * 109.47403 * 59.99697 * 4 3 2 32 32 H 1.09006 * 109.46993 * 299.99936 * 4 3 2 33 33 H 1.08993 * 109.47568 * 59.99395 * 5 4 3 34 34 H 1.09006 * 109.46817 * 299.99641 * 5 4 3 35 35 H 0.96997 * 120.00218 * 359.97438 * 6 5 4 36 36 H 0.96999 * 120.00150 * 359.97438 * 10 9 7 37 37 H 1.08997 * 113.60896 * 334.56836 * 19 17 15 38 38 H 1.09003 * 113.60854 * 105.46770 * 19 17 15 39 39 H 1.09005 * 113.53369 * 270.81284 * 20 19 17 40 40 H 1.08997 * 113.73980 * 139.94615 * 20 19 17 41 41 H 0.96995 * 120.00470 * 359.97438 * 24 23 21 42 42 H 0.97000 * 119.99452 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2170 3.0356 1.4426 6 7 3.4608 3.4587 2.8238 7 6 4.1339 4.6246 3.0741 8 1 4.4847 5.2325 2.2532 9 6 4.3643 5.0259 4.3829 10 7 3.9363 4.2853 5.3832 11 14 5.2819 6.6167 4.7242 12 1 6.7378 6.3387 4.8155 13 1 5.0301 7.5797 3.6222 14 1 4.8074 7.1965 6.0063 15 6 2.1388 -1.1672 -0.0005 16 8 3.3516 -1.1673 -0.0010 17 6 1.3853 -2.4723 -0.0017 18 1 0.6859 -2.5565 -0.8333 19 6 0.7678 -2.8283 1.3610 20 6 1.1930 -4.2818 1.0837 21 6 2.2883 -3.7051 0.1710 22 1 2.4336 -4.2721 -0.7485 23 6 3.5800 -3.4114 0.8896 24 7 4.7510 -3.4807 0.2260 25 8 3.5657 -3.1127 2.0649 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 1.6084 2.0284 -0.5138 30 1 3.1499 1.1384 -0.5138 31 1 3.0416 0.9506 1.9563 32 1 1.5001 1.8406 1.9564 33 1 2.6277 3.7950 0.9289 34 1 4.1695 2.9056 0.9286 35 1 3.1453 2.9130 3.5611 36 1 3.4595 3.4594 5.2059 37 1 1.2857 -2.3757 2.2066 38 1 -0.3125 -2.6884 1.4007 39 1 0.4399 -4.8612 0.5495 40 1 1.5828 -4.7998 1.9599 41 1 4.7624 -3.7200 -0.7139 42 1 5.5823 -3.2913 0.6884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498592823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:01 Heat of formation + Delta-G solvation = -41.110122 kcal Electronic energy + Delta-G solvation = -22904.430353 eV Core-core repulsion = 19499.554563 eV Total energy + Delta-G solvation = -3404.875789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.28070 -39.03871 -37.03696 -36.13371 -34.96056 -33.48279 -32.39070 -29.75722 -27.33336 -27.00212 -26.69673 -24.55735 -22.74266 -22.00939 -21.08104 -19.90859 -19.00236 -17.73513 -17.17077 -17.16981 -16.46981 -15.87816 -15.47007 -15.14777 -14.72416 -14.55652 -14.28678 -14.02557 -13.68888 -13.34681 -13.18883 -13.06039 -12.83368 -12.57658 -12.22612 -11.96599 -11.72686 -11.67277 -11.12769 -10.95355 -10.78375 -10.71211 -10.45315 -10.39518 -9.96557 -9.82870 -9.64001 -9.43805 -9.14760 -8.80200 -8.66358 -6.92014 -6.03157 -3.01980 2.52163 2.66722 2.96294 3.55671 3.56189 3.62056 3.75647 4.12393 4.23397 4.39987 4.47847 4.69846 4.73965 4.94764 5.02912 5.12200 5.15252 5.24018 5.29143 5.38974 5.43155 5.55391 5.64830 5.67044 5.68445 5.69806 5.90363 6.05507 6.08710 6.18736 6.35730 6.51347 6.84589 6.87505 6.90951 7.30938 7.46134 7.88062 8.11273 8.42970 8.83527 9.31870 10.18249 10.33914 11.45777 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.003527 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.204064 B = 7936.509270 C = 8397.450017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.611 5.611 3 C 0.121 3.879 4 C -0.139 4.139 5 C 0.163 3.837 6 N -0.745 5.745 7 C -0.332 4.332 8 H 0.064 0.936 9 C -0.047 4.047 10 N -0.945 5.945 11 Si 1.085 2.915 12 H -0.295 1.295 13 H -0.295 1.295 14 H -0.288 1.288 15 C 0.517 3.483 16 O -0.523 6.523 17 C -0.119 4.119 18 H 0.121 0.879 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.120 4.120 22 H 0.096 0.904 23 C 0.555 3.445 24 N -0.842 5.842 25 O -0.545 6.545 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.367 0.633 36 H 0.255 0.745 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.395 0.605 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 -19.290 -17.046 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.344 5.344 3 C -0.002 4.002 4 C -0.178 4.178 5 C 0.035 3.965 6 N -0.390 5.390 7 C -0.463 4.463 8 H 0.082 0.918 9 C -0.245 4.245 10 N -0.591 5.591 11 Si 0.916 3.084 12 H -0.223 1.223 13 H -0.222 1.222 14 H -0.214 1.214 15 C 0.305 3.695 16 O -0.399 6.399 17 C -0.140 4.140 18 H 0.139 0.861 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.142 4.142 22 H 0.114 0.886 23 C 0.340 3.660 24 N -0.403 5.403 25 O -0.422 6.422 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.200 0.800 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.222 0.778 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.508 -17.943 -15.292 25.063 hybrid contribution -0.417 -1.073 -1.522 1.908 sum -8.925 -19.015 -16.814 26.907 Atomic orbital electron populations 1.21882 0.79626 1.03789 1.01628 1.47806 1.06974 1.06200 1.73434 1.21462 0.97403 0.83511 0.97816 1.22060 1.00932 0.98909 0.95926 1.20461 0.96013 0.91796 0.88239 1.42371 1.69266 1.26225 1.01166 1.20081 1.32150 0.99475 0.94559 0.91755 1.25807 1.02131 1.05421 0.91110 1.70828 1.40950 1.15305 1.31995 0.83173 0.75624 0.74394 0.75249 1.22314 1.22174 1.21374 1.20441 0.88030 0.85118 0.75939 1.90709 1.13582 1.86508 1.49078 1.22757 0.98629 0.91197 1.01444 0.86132 1.23015 1.00821 0.96352 0.95923 1.22755 0.96499 0.96800 0.99579 1.22328 0.93628 0.97763 1.00516 0.88551 1.19436 0.84816 0.75161 0.86559 1.43546 1.08761 1.73493 1.14538 1.90732 1.87022 1.47943 1.16533 0.92646 0.90789 0.90646 0.90557 0.89863 0.91606 0.92190 0.96400 0.96259 0.80035 0.93364 0.88125 0.90401 0.89042 0.89975 0.77767 0.76934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 10.22 59.84 0.61 1.23 16 2 N -0.61 -7.59 2.87 -181.57 -0.52 -8.11 16 3 C 0.12 1.75 5.41 -4.04 -0.02 1.72 16 4 C -0.14 -2.56 5.65 -26.73 -0.15 -2.71 16 5 C 0.16 3.62 6.26 -4.04 -0.03 3.60 16 6 N -0.74 -20.63 5.60 -59.91 -0.34 -20.97 16 7 C -0.33 -10.05 9.99 -15.06 -0.15 -10.20 16 8 H 0.06 1.90 7.83 -52.48 -0.41 1.49 16 9 C -0.05 -1.46 5.50 -17.43 -0.10 -1.55 16 10 N -0.95 -30.90 13.70 55.49 0.76 -30.14 16 11 Si 1.08 27.20 29.92 -169.99 -5.09 22.12 16 12 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 C 0.52 6.97 6.97 -10.99 -0.08 6.89 16 16 O -0.52 -8.88 13.10 -2.13 -0.03 -8.91 16 17 C -0.12 -1.10 2.86 -90.96 -0.26 -1.36 16 18 H 0.12 0.73 8.09 -51.93 -0.42 0.31 16 19 C -0.12 -1.16 6.16 -25.82 -0.16 -1.32 16 20 C -0.12 -0.95 7.45 -25.82 -0.19 -1.14 16 21 C -0.12 -1.12 4.22 -90.96 -0.38 -1.50 16 22 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 23 C 0.56 7.46 4.65 -10.99 -0.05 7.41 16 24 N -0.84 -8.99 8.30 31.22 0.26 -8.73 16 25 O -0.54 -9.92 16.05 -2.13 -0.03 -9.96 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.51 5.19 -51.93 -0.27 0.24 16 28 H 0.07 0.64 8.07 -51.92 -0.42 0.22 16 29 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.08 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.37 10.43 6.50 -40.82 -0.27 10.17 16 36 H 0.26 8.29 6.77 -40.82 -0.28 8.02 16 37 H 0.10 1.35 7.15 -51.93 -0.37 0.98 16 38 H 0.08 0.53 7.37 -51.93 -0.38 0.14 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.78 7.96 -51.93 -0.41 0.36 16 41 H 0.40 2.91 8.83 -40.82 -0.36 2.55 16 42 H 0.40 4.34 8.93 -40.82 -0.36 3.98 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -39.65 341.38 -7.31 -46.96 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -6.51 Total: 11.53 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -0.96 Total: 1.06 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: 0.16 Total: -67.95 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.06 Total: -18.87 kcal Atomic # 14 Polarization: 27.20 SS G_CDS: -5.09 Total: 22.12 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -39.65 -7.31 -46.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498592823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.847 kcal (2) G-P(sol) polarization free energy of solvation -39.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds