Wall clock time and date at job start Tue Mar 31 2020 03:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 120.00142 * 2 1 4 4 C 1.52998 * 109.46838 * 90.00476 * 3 2 1 5 5 C 1.52996 * 109.47100 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47182 * 179.97438 * 5 4 3 7 7 C 1.36938 * 120.00208 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99460 * 0.02562 * 7 6 5 9 9 C 1.38813 * 120.00414 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99584 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47170 * 270.00133 * 11 9 7 13 13 H 1.48495 * 109.47304 * 30.00230 * 11 9 7 14 14 H 1.48498 * 109.46932 * 150.00605 * 11 9 7 15 15 C 1.34774 * 119.99817 * 180.02562 * 2 1 3 16 16 O 1.21282 * 120.00131 * 179.97438 * 15 2 1 17 17 C 1.50695 * 120.00335 * 0.02562 * 15 2 1 18 18 H 1.08996 * 112.85309 * 55.86080 * 17 15 2 19 19 C 1.53788 * 113.61357 * 284.66681 * 17 15 2 20 20 C 1.53958 * 87.02050 * 220.04620 * 19 17 15 21 21 C 1.53784 * 113.61647 * 187.06105 * 17 15 2 22 22 H 1.09003 * 113.60952 * 254.52388 * 21 17 15 23 23 C 1.50698 * 113.61579 * 25.43081 * 21 17 15 24 24 N 1.34773 * 119.99609 * 248.11388 * 23 21 17 25 25 O 1.21278 * 119.99930 * 68.11346 * 23 21 17 26 26 H 1.09000 * 109.47281 * 89.99719 * 1 2 3 27 27 H 1.09000 * 109.47125 * 209.99489 * 1 2 3 28 28 H 1.09008 * 109.47050 * 329.99878 * 1 2 3 29 29 H 1.09002 * 109.47195 * 330.00350 * 3 2 1 30 30 H 1.08999 * 109.47281 * 209.99815 * 3 2 1 31 31 H 1.08993 * 109.47403 * 59.99697 * 4 3 2 32 32 H 1.09006 * 109.46993 * 299.99936 * 4 3 2 33 33 H 1.08993 * 109.47568 * 59.99395 * 5 4 3 34 34 H 1.09006 * 109.46817 * 299.99641 * 5 4 3 35 35 H 0.96997 * 120.00218 * 359.97438 * 6 5 4 36 36 H 0.96999 * 120.00150 * 359.97438 * 10 9 7 37 37 H 1.08997 * 113.60896 * 334.56836 * 19 17 15 38 38 H 1.09003 * 113.60854 * 105.46770 * 19 17 15 39 39 H 1.09005 * 113.53369 * 270.81284 * 20 19 17 40 40 H 1.08997 * 113.73980 * 139.94615 * 20 19 17 41 41 H 0.96995 * 120.00470 * 359.97438 * 24 23 21 42 42 H 0.97000 * 119.99452 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2170 3.0356 1.4426 6 7 3.4608 3.4587 2.8238 7 6 4.1339 4.6246 3.0741 8 1 4.4847 5.2325 2.2532 9 6 4.3643 5.0259 4.3829 10 7 3.9363 4.2853 5.3832 11 14 5.2819 6.6167 4.7242 12 1 6.7378 6.3387 4.8155 13 1 5.0301 7.5797 3.6222 14 1 4.8074 7.1965 6.0063 15 6 2.1388 -1.1672 -0.0005 16 8 3.3516 -1.1673 -0.0010 17 6 1.3853 -2.4723 -0.0017 18 1 0.6859 -2.5565 -0.8333 19 6 0.7678 -2.8283 1.3610 20 6 1.1930 -4.2818 1.0837 21 6 2.2883 -3.7051 0.1710 22 1 2.4336 -4.2721 -0.7485 23 6 3.5800 -3.4114 0.8896 24 7 4.7510 -3.4807 0.2260 25 8 3.5657 -3.1127 2.0649 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 1.6084 2.0284 -0.5138 30 1 3.1499 1.1384 -0.5138 31 1 3.0416 0.9506 1.9563 32 1 1.5001 1.8406 1.9564 33 1 2.6277 3.7950 0.9289 34 1 4.1695 2.9056 0.9286 35 1 3.1453 2.9130 3.5611 36 1 3.4595 3.4594 5.2059 37 1 1.2857 -2.3757 2.2066 38 1 -0.3125 -2.6884 1.4007 39 1 0.4399 -4.8612 0.5495 40 1 1.5828 -4.7998 1.9599 41 1 4.7624 -3.7200 -0.7139 42 1 5.5823 -3.2913 0.6884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498592823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:01 Heat of formation + Delta-G solvation = -72.851828 kcal Electronic energy + Delta-G solvation = -22905.806776 eV Core-core repulsion = 19499.554563 eV Total energy + Delta-G solvation = -3406.252213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.15663 -40.08141 -38.02212 -37.56655 -36.58687 -34.50454 -34.23428 -31.57400 -28.34675 -27.91732 -27.51459 -26.15742 -24.61257 -22.88290 -22.73582 -20.86010 -19.92683 -19.41131 -18.61785 -18.06271 -17.53778 -16.95318 -16.60972 -16.44795 -16.12747 -15.80403 -15.74870 -15.42946 -15.27135 -14.96927 -14.13835 -13.96408 -13.69230 -13.64703 -13.27117 -13.23362 -12.90020 -12.77880 -12.63828 -12.47685 -12.40607 -11.97034 -11.88560 -11.87372 -11.42319 -11.36854 -11.00663 -10.85539 -10.64941 -10.42506 -9.69914 -9.21517 -8.48994 -5.43150 1.53493 1.54824 1.66801 1.72966 1.81267 2.02388 2.67500 2.74590 3.32978 3.40155 3.44857 3.62335 3.68705 3.78679 3.88910 4.05534 4.10089 4.27805 4.33545 4.36971 4.46232 4.55408 4.57285 4.65398 4.69515 4.78638 4.80070 4.94650 5.01210 5.03882 5.12253 5.12988 5.40326 5.49050 5.51251 5.97160 6.37250 6.39169 6.61777 6.99788 7.13563 7.50432 7.89453 8.02304 9.02744 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.003527 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.204064 B = 7936.509270 C = 8397.450017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.613 5.613 3 C 0.130 3.870 4 C -0.119 4.119 5 C 0.162 3.838 6 N -0.762 5.762 7 C -0.342 4.342 8 H 0.070 0.930 9 C -0.107 4.107 10 N -0.973 5.973 11 Si 1.136 2.864 12 H -0.285 1.285 13 H -0.268 1.268 14 H -0.289 1.289 15 C 0.502 3.498 16 O -0.570 6.570 17 C -0.105 4.105 18 H 0.171 0.829 19 C -0.128 4.128 20 C -0.107 4.107 21 C -0.124 4.124 22 H 0.136 0.864 23 C 0.541 3.459 24 N -0.833 5.833 25 O -0.608 6.608 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.011 0.989 35 H 0.357 0.643 36 H 0.241 0.759 37 H 0.048 0.952 38 H 0.111 0.889 39 H 0.137 0.863 40 H 0.058 0.942 41 H 0.412 0.588 42 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.651 -19.675 -19.836 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.345 5.345 3 C 0.006 3.994 4 C -0.158 4.158 5 C 0.035 3.965 6 N -0.407 5.407 7 C -0.473 4.473 8 H 0.088 0.912 9 C -0.297 4.297 10 N -0.621 5.621 11 Si 0.960 3.040 12 H -0.212 1.212 13 H -0.193 1.193 14 H -0.215 1.215 15 C 0.291 3.709 16 O -0.449 6.449 17 C -0.126 4.126 18 H 0.188 0.812 19 C -0.166 4.166 20 C -0.144 4.144 21 C -0.146 4.146 22 H 0.154 0.846 23 C 0.328 3.672 24 N -0.394 5.394 25 O -0.490 6.490 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.029 0.971 35 H 0.189 0.811 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.129 0.871 39 H 0.155 0.845 40 H 0.077 0.923 41 H 0.242 0.758 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.595 -18.364 -18.184 27.931 hybrid contribution 0.248 -0.986 -0.692 1.230 sum -10.347 -19.350 -18.877 28.945 Atomic orbital electron populations 1.22192 0.76747 1.04620 1.03941 1.47929 1.08716 1.05061 1.72748 1.21234 0.97901 0.85632 0.94601 1.21849 0.99602 0.95709 0.98686 1.20629 0.96307 0.94005 0.85567 1.42664 1.69235 1.25732 1.03053 1.20494 1.31703 1.00148 0.94960 0.91199 1.27473 1.02750 1.08352 0.91141 1.70963 1.42681 1.15555 1.32927 0.82544 0.74710 0.70958 0.75831 1.21159 1.19255 1.21479 1.21358 0.87931 0.86727 0.74891 1.90682 1.15826 1.87317 1.51072 1.22934 0.98664 0.88251 1.02792 0.81187 1.22955 1.02171 0.97240 0.94239 1.22828 0.96690 0.96010 0.98899 1.22440 0.91612 0.98661 1.01888 0.84564 1.20344 0.86749 0.74018 0.86130 1.43549 1.08232 1.72196 1.15375 1.90699 1.88057 1.50888 1.19374 0.89438 0.89120 0.90828 0.87436 0.91564 0.95566 0.91762 0.94638 0.97108 0.81134 0.94912 0.93324 0.87071 0.84461 0.92271 0.75783 0.77502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 10.22 127.77 1.31 2.19 16 2 N -0.61 -14.28 2.87 -846.76 -2.43 -16.71 16 3 C 0.13 3.68 5.41 86.38 0.47 4.15 16 4 C -0.12 -4.51 5.65 30.59 0.17 -4.33 16 5 C 0.16 7.30 6.26 86.38 0.54 7.84 16 6 N -0.76 -43.41 5.60 -343.45 -1.92 -45.33 16 7 C -0.34 -20.94 9.99 84.03 0.84 -20.10 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 9 C -0.11 -6.61 5.50 84.86 0.47 -6.14 16 10 N -0.97 -65.16 13.70 21.65 0.30 -64.87 16 11 Si 1.14 54.59 29.92 68.60 2.05 56.64 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 14 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 15 C 0.50 13.09 6.97 87.66 0.61 13.70 16 16 O -0.57 -19.88 13.10 4.32 0.06 -19.82 16 17 C -0.11 -1.64 2.86 -11.01 -0.03 -1.67 16 18 H 0.17 1.01 8.09 -2.39 -0.02 0.99 16 19 C -0.13 -2.19 6.16 31.18 0.19 -2.00 16 20 C -0.11 -1.44 7.45 31.18 0.23 -1.20 16 21 C -0.12 -2.04 4.22 -11.01 -0.05 -2.09 16 22 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 23 C 0.54 14.90 4.65 87.66 0.41 15.31 16 24 N -0.83 -18.27 8.30 -173.54 -1.44 -19.71 16 25 O -0.61 -23.88 16.05 4.33 0.07 -23.81 16 26 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.09 0.91 5.19 -2.39 -0.01 0.90 16 28 H 0.07 1.03 8.07 -2.38 -0.02 1.01 16 29 H 0.11 2.38 8.07 -2.39 -0.02 2.36 16 30 H 0.07 2.11 7.42 -2.39 -0.02 2.10 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.36 21.29 6.50 -92.71 -0.60 20.69 16 36 H 0.24 16.30 6.77 -92.71 -0.63 15.67 16 37 H 0.05 1.37 7.15 -2.39 -0.02 1.35 16 38 H 0.11 1.09 7.37 -2.39 -0.02 1.08 16 39 H 0.14 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.06 1.09 7.96 -2.39 -0.02 1.07 16 41 H 0.41 5.81 8.83 -92.71 -0.82 4.99 16 42 H 0.40 9.22 8.93 -92.71 -0.83 8.40 16 Total: -1.00 -92.61 341.38 0.78 -91.83 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -1.06 Total: 36.12 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 5.16 Total: 5.65 kcal Atomic # 7 Polarization: -141.12 SS G_CDS: -5.50 Total: -146.62 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: 0.13 Total: -43.62 kcal Atomic # 14 Polarization: 54.59 SS G_CDS: 2.05 Total: 56.64 kcal Total: -92.61 0.78 -91.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498592823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.983 kcal (2) G-P(sol) polarization free energy of solvation -92.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds