Wall clock time and date at job start Tue Mar 31 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 119.99759 * 2 1 4 4 H 1.08004 * 119.99991 * 203.33658 * 3 2 1 5 5 C 1.38812 * 120.00045 * 23.33732 * 3 2 1 6 6 N 1.31617 * 119.99737 * 16.04007 * 5 3 2 7 7 Si 1.86799 * 119.99958 * 196.03659 * 5 3 2 8 8 H 1.48505 * 109.46928 * 90.00192 * 7 5 3 9 9 H 1.48505 * 109.47225 * 210.00060 * 7 5 3 10 10 H 1.48492 * 109.47332 * 329.99883 * 7 5 3 11 11 C 1.46504 * 120.00518 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46970 * 89.99702 * 11 2 1 13 13 N 1.46494 * 109.46764 * 180.02562 * 12 11 2 14 14 C 1.46508 * 119.99868 * 270.00155 * 13 12 11 15 15 C 1.34776 * 120.00388 * 89.99920 * 13 12 11 16 16 O 1.21286 * 119.99765 * 4.57378 * 15 13 12 17 17 C 1.50703 * 120.00500 * 184.83970 * 15 13 12 18 18 H 1.08998 * 110.85360 * 326.11843 * 17 15 13 19 19 C 1.54632 * 110.96423 * 89.90576 * 17 15 13 20 20 C 1.51282 * 104.19382 * 142.91866 * 19 17 15 21 21 O 1.21281 * 124.93845 * 163.71057 * 20 19 17 22 22 N 1.34416 * 110.11454 * 343.74971 * 20 19 17 23 23 C 1.46501 * 124.34725 * 179.59229 * 22 20 19 24 24 C 1.46819 * 111.31897 * 359.61896 * 22 20 19 25 25 H 1.09004 * 109.47265 * 274.19644 * 1 2 3 26 26 H 1.08991 * 109.47627 * 34.20016 * 1 2 3 27 27 H 1.09009 * 109.46861 * 154.20220 * 1 2 3 28 28 H 0.97008 * 119.99874 * 179.97438 * 6 5 3 29 29 H 1.09005 * 109.46751 * 329.99704 * 11 2 1 30 30 H 1.08996 * 109.47325 * 210.00064 * 11 2 1 31 31 H 1.09001 * 109.46915 * 60.00313 * 12 11 2 32 32 H 1.08994 * 109.46874 * 300.00302 * 12 11 2 33 33 H 1.09000 * 109.46951 * 264.71817 * 14 13 12 34 34 H 1.08995 * 109.47238 * 24.72154 * 14 13 12 35 35 H 1.09005 * 109.47111 * 144.72374 * 14 13 12 36 36 H 1.08994 * 110.48804 * 261.59795 * 19 17 15 37 37 H 1.09003 * 110.48612 * 24.11036 * 19 17 15 38 38 H 1.08997 * 109.47474 * 359.96699 * 23 22 20 39 39 H 1.08999 * 109.47402 * 119.97443 * 23 22 20 40 40 H 1.09001 * 109.46539 * 239.97004 * 23 22 20 41 41 H 1.08997 * 110.23953 * 257.98837 * 24 22 20 42 42 H 1.09006 * 110.28267 * 135.96956 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1634 1.2242 -0.3705 5 6 1.5407 2.3389 0.4762 6 7 0.4502 2.2529 1.2081 7 14 2.2690 4.0124 0.0783 8 1 1.6790 4.5210 -1.1860 9 1 1.9664 4.9590 1.1818 10 1 3.7405 3.8876 -0.0770 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4433 13 7 3.1846 -2.9786 -1.4438 14 6 4.6497 -2.9791 -1.4436 15 6 2.5104 -4.1456 -1.4444 16 8 1.3005 -4.1469 -1.5283 17 6 3.2594 -5.4488 -1.3348 18 1 4.2250 -5.3847 -1.8365 19 6 3.4309 -5.8657 0.1443 20 6 3.2803 -7.3709 0.1253 21 8 3.6191 -8.1142 1.0218 22 7 2.7173 -7.7646 -1.0300 23 6 2.4362 -9.1592 -1.3795 24 6 2.4206 -6.6176 -1.8973 25 1 -0.3634 0.0752 1.0249 26 1 -0.3634 0.8499 -0.5776 27 1 -0.3633 -0.9253 -0.4473 28 1 0.0248 3.0586 1.5413 29 1 1.6085 -2.0286 0.5130 30 1 3.1500 -1.1386 0.5133 31 1 3.0416 -0.9498 -1.9568 32 1 1.5002 -1.8398 -1.9571 33 1 5.0131 -3.0733 -2.4669 34 1 5.0133 -2.0460 -1.0134 35 1 5.0127 -3.8185 -0.8505 36 1 4.4197 -5.5858 0.5075 37 1 2.6560 -5.4106 0.7612 38 1 2.7537 -9.8092 -0.5641 39 1 1.3665 -9.2832 -1.5476 40 1 2.9796 -9.4229 -2.2869 41 1 1.3588 -6.3757 -1.8524 42 1 2.7159 -6.8339 -2.9240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667574446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:58 Heat of formation + Delta-G solvation = -34.037919 kcal Electronic energy + Delta-G solvation = -22768.976709 eV Core-core repulsion = 19364.407594 eV Total energy + Delta-G solvation = -3404.569116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02413 -39.38386 -36.62016 -36.01774 -34.97581 -33.19552 -31.46840 -28.91871 -27.91730 -27.16659 -26.47967 -25.77464 -24.12609 -22.33120 -20.56075 -19.82730 -18.96127 -17.74466 -16.95703 -16.67015 -16.07854 -15.93599 -15.41315 -15.19960 -14.68078 -14.05457 -13.94131 -13.78282 -13.58877 -13.46974 -13.04430 -12.88799 -12.72427 -12.53666 -12.51452 -12.31863 -12.05504 -11.69699 -11.53369 -11.33916 -10.89239 -10.86415 -10.52386 -10.25256 -10.20311 -9.92985 -9.83454 -9.67180 -8.98843 -8.74964 -8.42520 -6.73835 -5.73784 -3.21170 2.32363 2.52419 2.71732 3.07908 3.36932 3.43038 3.44684 3.97405 4.15569 4.38235 4.50184 4.61781 4.78465 4.99762 5.04808 5.06850 5.20397 5.31835 5.33446 5.41400 5.41608 5.48817 5.60545 5.63670 5.70897 5.71367 6.10913 6.17721 6.25878 6.47482 6.60485 6.78702 6.84182 6.92059 7.36750 7.47917 7.72735 7.78654 7.90368 8.19345 8.38775 9.21431 9.85471 10.35629 11.30872 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.034437 B = 0.003284 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.885901 B = 8523.404231 C = 8637.019339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.598 5.598 3 C -0.261 4.261 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.902 5.902 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.143 3.857 12 C 0.091 3.909 13 N -0.606 5.606 14 C 0.075 3.925 15 C 0.521 3.479 16 O -0.532 6.532 17 C -0.125 4.125 18 H 0.111 0.889 19 C -0.140 4.140 20 C 0.522 3.478 21 O -0.533 6.533 22 N -0.624 5.624 23 C 0.093 3.907 24 C 0.115 3.885 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.003 0.997 28 H 0.253 0.747 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.848 -17.845 -8.424 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.321 5.321 3 C -0.391 4.391 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.546 5.546 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.014 3.986 12 C -0.034 4.034 13 N -0.339 5.339 14 C -0.069 4.069 15 C 0.307 3.693 16 O -0.409 6.409 17 C -0.147 4.147 18 H 0.129 0.871 19 C -0.180 4.180 20 C 0.310 3.690 21 O -0.410 6.410 22 N -0.358 5.358 23 C -0.048 4.048 24 C -0.008 4.008 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.021 0.979 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.241 -18.149 -7.925 21.086 hybrid contribution 0.426 1.098 -0.312 1.219 sum 7.667 -17.051 -8.237 20.430 Atomic orbital electron populations 1.20797 0.82481 0.95810 0.99372 1.43833 1.01912 1.00417 1.85950 1.19157 0.98592 0.85557 1.35778 0.91450 1.25025 0.98217 0.98543 0.97730 1.70095 1.21630 1.27339 1.35576 0.86275 0.78578 0.84208 0.77565 1.21471 1.21772 1.20479 1.20977 0.96253 0.88759 0.92593 1.22601 0.96876 0.81857 1.02025 1.47939 1.06972 1.06628 1.72313 1.21855 0.79825 1.03689 1.01494 1.19961 0.87716 0.84709 0.76925 1.90725 1.13823 1.86902 1.49428 1.22264 1.00989 0.93689 0.97765 0.87062 1.22282 1.06229 0.93613 0.95888 1.20776 0.76232 0.90635 0.81386 1.90730 1.51213 1.60126 1.38883 1.48172 1.61616 1.07303 1.18740 1.21570 1.01167 0.80459 1.01634 1.22054 1.01480 0.83239 0.94031 0.95168 0.94188 0.97860 0.93688 0.94478 0.93566 0.90605 0.90351 0.92620 0.90097 0.91485 0.87119 0.86876 0.89868 0.91860 0.91976 0.88651 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 9.00 59.84 0.54 4.60 16 2 N -0.60 -15.09 2.92 -181.11 -0.53 -15.62 16 3 C -0.26 -7.07 9.63 -15.06 -0.15 -7.21 16 4 H 0.07 1.75 7.88 -52.48 -0.41 1.33 16 5 C 0.00 0.11 5.03 -17.43 -0.09 0.02 16 6 N -0.90 -26.47 10.92 55.49 0.61 -25.87 16 7 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 8 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 C 0.14 2.93 5.97 -4.04 -0.02 2.90 16 12 C 0.09 1.55 5.74 -4.04 -0.02 1.53 16 13 N -0.61 -7.96 2.87 -181.57 -0.52 -8.48 16 14 C 0.07 0.67 9.84 59.85 0.59 1.26 16 15 C 0.52 6.90 6.78 -10.98 -0.07 6.83 16 16 O -0.53 -9.19 15.19 5.55 0.08 -9.11 16 17 C -0.13 -1.16 2.54 -90.14 -0.23 -1.38 16 18 H 0.11 0.73 6.83 -51.93 -0.35 0.38 16 19 C -0.14 -1.40 6.22 -26.74 -0.17 -1.57 16 20 C 0.52 6.34 8.02 -10.86 -0.09 6.25 16 21 O -0.53 -8.37 17.35 5.56 0.10 -8.27 16 22 N -0.62 -6.20 3.33 -180.25 -0.60 -6.80 16 23 C 0.09 0.70 11.14 59.85 0.67 1.37 16 24 C 0.12 1.04 6.85 -3.09 -0.02 1.01 16 25 H 0.03 0.83 7.38 -51.93 -0.38 0.44 16 26 H 0.04 1.07 7.38 -51.93 -0.38 0.68 16 27 H 0.00 0.07 8.04 -51.92 -0.42 -0.35 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 31 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 32 H 0.08 1.50 7.36 -51.93 -0.38 1.12 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.76 8.03 -51.93 -0.42 0.34 16 35 H 0.07 0.45 6.26 -51.93 -0.33 0.13 16 36 H 0.11 0.91 7.86 -51.93 -0.41 0.50 16 37 H 0.11 1.28 7.89 -51.93 -0.41 0.87 16 38 H 0.08 0.70 7.53 -51.93 -0.39 0.31 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 1.03 6.88 -51.93 -0.36 0.68 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -34.45 344.66 -6.49 -40.94 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -6.72 Total: -4.11 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 0.94 Total: 15.60 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -1.05 Total: -56.76 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.18 Total: -17.38 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.45 -6.49 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667574446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.901 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds