Wall clock time and date at job start Tue Mar 31 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 119.99759 * 2 1 4 4 H 1.08004 * 119.99991 * 203.33658 * 3 2 1 5 5 C 1.38812 * 120.00045 * 23.33732 * 3 2 1 6 6 N 1.31617 * 119.99737 * 16.04007 * 5 3 2 7 7 Si 1.86799 * 119.99958 * 196.03659 * 5 3 2 8 8 H 1.48505 * 109.46928 * 90.00192 * 7 5 3 9 9 H 1.48505 * 109.47225 * 210.00060 * 7 5 3 10 10 H 1.48492 * 109.47332 * 329.99883 * 7 5 3 11 11 C 1.46504 * 120.00518 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46970 * 89.99702 * 11 2 1 13 13 N 1.46494 * 109.46764 * 180.02562 * 12 11 2 14 14 C 1.46508 * 119.99868 * 270.00155 * 13 12 11 15 15 C 1.34776 * 120.00388 * 89.99920 * 13 12 11 16 16 O 1.21286 * 119.99765 * 4.57378 * 15 13 12 17 17 C 1.50703 * 120.00500 * 184.83970 * 15 13 12 18 18 H 1.08998 * 110.85360 * 326.11843 * 17 15 13 19 19 C 1.54632 * 110.96423 * 89.90576 * 17 15 13 20 20 C 1.51282 * 104.19382 * 142.91866 * 19 17 15 21 21 O 1.21281 * 124.93845 * 163.71057 * 20 19 17 22 22 N 1.34416 * 110.11454 * 343.74971 * 20 19 17 23 23 C 1.46501 * 124.34725 * 179.59229 * 22 20 19 24 24 C 1.46819 * 111.31897 * 359.61896 * 22 20 19 25 25 H 1.09004 * 109.47265 * 274.19644 * 1 2 3 26 26 H 1.08991 * 109.47627 * 34.20016 * 1 2 3 27 27 H 1.09009 * 109.46861 * 154.20220 * 1 2 3 28 28 H 0.97008 * 119.99874 * 179.97438 * 6 5 3 29 29 H 1.09005 * 109.46751 * 329.99704 * 11 2 1 30 30 H 1.08996 * 109.47325 * 210.00064 * 11 2 1 31 31 H 1.09001 * 109.46915 * 60.00313 * 12 11 2 32 32 H 1.08994 * 109.46874 * 300.00302 * 12 11 2 33 33 H 1.09000 * 109.46951 * 264.71817 * 14 13 12 34 34 H 1.08995 * 109.47238 * 24.72154 * 14 13 12 35 35 H 1.09005 * 109.47111 * 144.72374 * 14 13 12 36 36 H 1.08994 * 110.48804 * 261.59795 * 19 17 15 37 37 H 1.09003 * 110.48612 * 24.11036 * 19 17 15 38 38 H 1.08997 * 109.47474 * 359.96699 * 23 22 20 39 39 H 1.08999 * 109.47402 * 119.97443 * 23 22 20 40 40 H 1.09001 * 109.46539 * 239.97004 * 23 22 20 41 41 H 1.08997 * 110.23953 * 257.98837 * 24 22 20 42 42 H 1.09006 * 110.28267 * 135.96956 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1634 1.2242 -0.3705 5 6 1.5407 2.3389 0.4762 6 7 0.4502 2.2529 1.2081 7 14 2.2690 4.0124 0.0783 8 1 1.6790 4.5210 -1.1860 9 1 1.9664 4.9590 1.1818 10 1 3.7405 3.8876 -0.0770 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4433 13 7 3.1846 -2.9786 -1.4438 14 6 4.6497 -2.9791 -1.4436 15 6 2.5104 -4.1456 -1.4444 16 8 1.3005 -4.1469 -1.5283 17 6 3.2594 -5.4488 -1.3348 18 1 4.2250 -5.3847 -1.8365 19 6 3.4309 -5.8657 0.1443 20 6 3.2803 -7.3709 0.1253 21 8 3.6191 -8.1142 1.0218 22 7 2.7173 -7.7646 -1.0300 23 6 2.4362 -9.1592 -1.3795 24 6 2.4206 -6.6176 -1.8973 25 1 -0.3634 0.0752 1.0249 26 1 -0.3634 0.8499 -0.5776 27 1 -0.3633 -0.9253 -0.4473 28 1 0.0248 3.0586 1.5413 29 1 1.6085 -2.0286 0.5130 30 1 3.1500 -1.1386 0.5133 31 1 3.0416 -0.9498 -1.9568 32 1 1.5002 -1.8398 -1.9571 33 1 5.0131 -3.0733 -2.4669 34 1 5.0133 -2.0460 -1.0134 35 1 5.0127 -3.8185 -0.8505 36 1 4.4197 -5.5858 0.5075 37 1 2.6560 -5.4106 0.7612 38 1 2.7537 -9.8092 -0.5641 39 1 1.3665 -9.2832 -1.5476 40 1 2.9796 -9.4229 -2.2869 41 1 1.3588 -6.3757 -1.8524 42 1 2.7159 -6.8339 -2.9240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667574446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:58 Heat of formation + Delta-G solvation = -57.637910 kcal Electronic energy + Delta-G solvation = -22770.000082 eV Core-core repulsion = 19364.407594 eV Total energy + Delta-G solvation = -3405.592488 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.93509 -40.43884 -37.93818 -37.30116 -36.39143 -34.09776 -33.30863 -30.40714 -28.77915 -27.98020 -27.90559 -27.34992 -25.53727 -23.53715 -22.25717 -20.70011 -19.96956 -18.84405 -18.51985 -17.81930 -17.28236 -16.92374 -16.65850 -16.26627 -16.16410 -15.54840 -15.18142 -14.86269 -14.78233 -14.54337 -14.35087 -14.09895 -13.89477 -13.71289 -13.43071 -13.17906 -13.09600 -13.02895 -12.80123 -12.72210 -12.46420 -12.44011 -12.33610 -12.12815 -11.90663 -11.60102 -11.20900 -10.78533 -10.65651 -9.78430 -9.73946 -8.75575 -7.82849 -5.33650 1.39446 1.48612 1.50825 1.53255 1.59345 1.86023 2.12839 2.53443 3.12633 3.30764 3.38132 3.57375 3.78667 3.84529 4.03720 4.22153 4.35541 4.38360 4.43889 4.46837 4.57615 4.64874 4.68934 4.73640 4.78191 4.82710 4.85876 4.88053 4.97134 5.04118 5.13292 5.29174 5.44513 5.57228 5.60483 5.66466 5.97007 6.31544 6.45266 7.02307 7.11615 7.16108 7.83184 8.30670 9.21062 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.034437 B = 0.003284 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.885901 B = 8523.404231 C = 8637.019339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.616 5.616 3 C -0.265 4.265 4 H 0.081 0.919 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.972 3.028 8 H -0.287 1.287 9 H -0.299 1.299 10 H -0.261 1.261 11 C 0.147 3.853 12 C 0.111 3.889 13 N -0.606 5.606 14 C 0.066 3.934 15 C 0.519 3.481 16 O -0.579 6.579 17 C -0.109 4.109 18 H 0.153 0.847 19 C -0.136 4.136 20 C 0.514 3.486 21 O -0.577 6.577 22 N -0.620 5.620 23 C 0.087 3.913 24 C 0.115 3.885 25 H 0.002 0.998 26 H 0.018 0.982 27 H 0.022 0.978 28 H 0.248 0.752 29 H 0.025 0.975 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.461 -18.546 -10.273 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.340 5.340 3 C -0.395 4.395 4 H 0.099 0.901 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.214 1.214 9 H -0.226 1.226 10 H -0.185 1.185 11 C 0.019 3.981 12 C -0.015 4.015 13 N -0.337 5.337 14 C -0.075 4.075 15 C 0.307 3.693 16 O -0.459 6.459 17 C -0.130 4.130 18 H 0.170 0.830 19 C -0.176 4.176 20 C 0.303 3.697 21 O -0.457 6.457 22 N -0.353 5.353 23 C -0.054 4.054 24 C -0.007 4.007 25 H 0.020 0.980 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.152 0.848 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.908 -18.890 -9.825 23.485 hybrid contribution -0.402 1.217 0.251 1.306 sum 9.505 -17.673 -9.574 22.234 Atomic orbital electron populations 1.20490 0.83237 0.95701 0.97386 1.44077 1.01891 1.01766 1.86242 1.19582 0.99065 0.86248 1.34583 0.90145 1.25883 0.98941 1.02248 0.98009 1.70268 1.23368 1.27821 1.37237 0.85192 0.78714 0.79392 0.76693 1.21401 1.22569 1.18540 1.21070 0.95599 0.86530 0.94862 1.21961 0.96651 0.84052 0.98797 1.47957 1.08769 1.05102 1.71914 1.22185 0.76693 1.04824 1.03813 1.20616 0.87309 0.85830 0.75560 1.90714 1.16170 1.87650 1.51357 1.22246 1.02150 0.91091 0.97559 0.82965 1.22270 1.06974 0.92138 0.96264 1.21093 0.76029 0.91224 0.81367 1.90705 1.53390 1.61233 1.40399 1.48334 1.60273 1.08484 1.18174 1.21769 1.02311 0.79012 1.02305 1.22120 1.00370 0.82780 0.95463 0.97957 0.96303 0.95983 0.94291 0.95662 0.92892 0.89986 0.92747 0.89971 0.90485 0.88652 0.84762 0.88671 0.91147 0.90817 0.89198 0.90790 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.26 9.00 127.77 1.15 10.41 16 2 N -0.62 -31.30 2.92 -726.92 -2.12 -33.42 16 3 C -0.26 -14.22 9.63 84.03 0.81 -13.41 16 4 H 0.08 4.03 7.88 -2.91 -0.02 4.00 16 5 C -0.06 -3.10 5.03 84.86 0.43 -2.68 16 6 N -0.94 -56.49 10.92 21.65 0.24 -56.25 16 7 Si 0.97 44.24 29.58 68.60 2.03 46.27 16 8 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 9 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 11 C 0.15 5.95 5.97 86.38 0.52 6.46 16 12 C 0.11 3.67 5.74 86.38 0.50 4.16 16 13 N -0.61 -14.44 2.87 -846.74 -2.43 -16.87 16 14 C 0.07 0.91 9.84 127.77 1.26 2.16 16 15 C 0.52 12.76 6.78 87.66 0.59 13.36 16 16 O -0.58 -19.89 15.19 -3.05 -0.05 -19.94 16 17 C -0.11 -1.66 2.54 -10.48 -0.03 -1.69 16 18 H 0.15 1.14 6.83 -2.39 -0.02 1.12 16 19 C -0.14 -2.45 6.22 30.59 0.19 -2.26 16 20 C 0.51 11.84 8.02 87.90 0.71 12.55 16 21 O -0.58 -17.99 17.35 -3.03 -0.05 -18.04 16 22 N -0.62 -11.07 3.33 -842.77 -2.81 -13.88 16 23 C 0.09 1.14 11.14 127.77 1.42 2.57 16 24 C 0.12 1.77 6.85 86.82 0.59 2.36 16 25 H 0.00 0.12 7.38 -2.38 -0.02 0.11 16 26 H 0.02 1.02 7.38 -2.39 -0.02 1.00 16 27 H 0.02 1.03 8.04 -2.38 -0.02 1.01 16 28 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 29 H 0.02 1.07 8.07 -2.38 -0.02 1.05 16 30 H 0.05 2.06 8.04 -2.39 -0.02 2.04 16 31 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16 32 H 0.05 2.08 7.36 -2.39 -0.02 2.06 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 1.17 8.03 -2.39 -0.02 1.15 16 35 H 0.09 0.79 6.26 -2.38 -0.01 0.78 16 36 H 0.13 1.76 7.86 -2.39 -0.02 1.74 16 37 H 0.10 2.10 7.89 -2.39 -0.02 2.09 16 38 H 0.07 1.13 7.53 -2.39 -0.02 1.11 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 1.52 6.88 -2.39 -0.02 1.50 16 42 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -77.42 344.66 3.94 -73.49 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.00 Total: 4.66 kcal Atomic # 6 Polarization: 25.85 SS G_CDS: 8.14 Total: 33.99 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -7.13 Total: -120.42 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.10 Total: -37.98 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -77.42 3.94 -73.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667574446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.847 kcal (2) G-P(sol) polarization free energy of solvation -77.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds