Wall clock time and date at job start Tue Mar 31 2020 03:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 120.00383 * 2 1 4 4 H 1.07997 * 120.00502 * 202.34696 * 3 2 1 5 5 C 1.38816 * 119.99307 * 22.34167 * 3 2 1 6 6 N 1.31623 * 120.00192 * 11.36001 * 5 3 2 7 7 Si 1.86804 * 119.99876 * 191.35305 * 5 3 2 8 8 H 1.48503 * 109.46938 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46890 * 120.00154 * 7 5 3 10 10 H 1.48496 * 109.47247 * 240.00363 * 7 5 3 11 11 C 1.46502 * 120.00130 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47144 * 269.99861 * 11 2 1 13 13 N 1.46494 * 109.47020 * 179.97438 * 12 11 2 14 14 C 1.46501 * 120.00168 * 269.99744 * 13 12 11 15 15 C 1.34782 * 119.99775 * 90.00470 * 13 12 11 16 16 O 1.21280 * 119.99984 * 359.97438 * 15 13 12 17 17 C 1.50702 * 119.99577 * 179.97438 * 15 13 12 18 18 H 1.08998 * 110.88768 * 56.18693 * 17 15 13 19 19 C 1.54856 * 111.03903 * 292.28533 * 17 15 13 20 20 C 1.51287 * 104.20991 * 217.10216 * 19 17 15 21 21 O 1.21279 * 124.94339 * 196.24435 * 20 19 17 22 22 N 1.34414 * 110.11552 * 16.26869 * 20 19 17 23 23 C 1.46498 * 124.35313 * 180.38336 * 22 20 19 24 24 C 1.46768 * 111.30280 * 0.40736 * 22 20 19 25 25 H 1.08997 * 109.46910 * 274.20401 * 1 2 3 26 26 H 1.08998 * 109.47316 * 34.20597 * 1 2 3 27 27 H 1.09001 * 109.46806 * 154.21081 * 1 2 3 28 28 H 0.97001 * 119.99263 * 179.97438 * 6 5 3 29 29 H 1.09004 * 109.47378 * 150.00231 * 11 2 1 30 30 H 1.09000 * 109.46971 * 29.99564 * 11 2 1 31 31 H 1.09002 * 109.46780 * 59.99407 * 12 11 2 32 32 H 1.08996 * 109.46698 * 300.00174 * 12 11 2 33 33 H 1.09003 * 109.47109 * 270.00389 * 14 13 12 34 34 H 1.09000 * 109.46655 * 30.00464 * 14 13 12 35 35 H 1.08995 * 109.47014 * 150.00357 * 14 13 12 36 36 H 1.08996 * 110.46906 * 98.42830 * 19 17 15 37 37 H 1.08999 * 110.60559 * 335.84882 * 19 17 15 38 38 H 1.08999 * 109.47386 * 270.02696 * 23 22 20 39 39 H 1.09008 * 109.46807 * 30.02403 * 23 22 20 40 40 H 1.08999 * 109.47419 * 150.02174 * 23 22 20 41 41 H 1.08999 * 110.24914 * 101.98361 * 24 22 20 42 42 H 1.08994 * 110.24607 * 223.89688 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4570 6 7 0.3842 2.2690 1.0937 7 14 2.3365 4.0048 0.1685 8 1 3.6137 3.8168 -0.5655 9 1 1.4265 4.8615 -0.6335 10 1 2.6072 4.6572 1.4748 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 7 3.1845 -2.9800 1.4412 14 6 2.4516 -4.2485 1.4409 15 6 4.5324 -2.9805 1.4411 16 8 5.1391 -1.9304 1.4410 17 6 5.2853 -4.2859 1.4410 18 1 4.9885 -4.9057 0.5950 19 6 5.0884 -5.0413 2.7784 20 6 6.4337 -5.6796 3.0460 21 8 6.6315 -6.5778 3.8366 22 7 7.3779 -5.1061 2.2804 23 6 8.7914 -5.4912 2.2838 24 6 6.8111 -4.0440 1.4408 25 1 -0.3633 0.0753 1.0249 26 1 -0.3634 0.8499 -0.5777 27 1 -0.3633 -0.9253 -0.4471 28 1 -0.0460 3.0775 1.4133 29 1 3.1500 -1.1382 -0.5143 30 1 1.6084 -2.0282 -0.5147 31 1 1.5001 -1.8415 1.9556 32 1 3.0416 -0.9516 1.9559 33 1 2.2699 -4.5634 2.4685 34 1 1.4992 -4.1175 0.9272 35 1 3.0403 -5.0081 0.9267 36 1 4.3177 -5.8051 2.6749 37 1 4.8304 -4.3461 3.5773 38 1 9.3270 -4.9010 3.0272 39 1 8.8789 -6.5498 2.5285 40 1 9.2199 -5.3096 1.2981 41 1 7.0380 -3.0661 1.8653 42 1 7.2041 -4.1147 0.4267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667574447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:00 Heat of formation + Delta-G solvation = -56.204877 kcal Electronic energy + Delta-G solvation = -22832.251204 eV Core-core repulsion = 19426.720857 eV Total energy + Delta-G solvation = -3405.530347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92830 -40.41093 -37.91747 -37.29743 -36.41402 -34.12994 -33.25228 -30.32687 -28.80003 -27.96182 -27.79621 -27.40278 -25.50235 -23.54884 -22.19751 -20.71574 -19.98582 -18.83888 -18.46783 -17.79181 -17.31367 -16.89955 -16.75333 -16.31848 -16.02652 -15.53209 -15.17680 -14.75933 -14.67277 -14.61610 -14.49247 -13.97648 -13.85999 -13.72986 -13.43500 -13.17615 -13.10333 -12.93851 -12.80439 -12.72109 -12.44654 -12.41212 -12.35255 -12.02934 -11.99016 -11.55930 -11.19343 -10.72231 -10.68121 -9.79859 -9.72298 -8.75795 -7.85131 -5.32313 1.43510 1.43976 1.45633 1.55997 1.59105 1.86114 2.13306 2.51214 3.11579 3.29057 3.31966 3.62777 3.81149 3.85943 4.02968 4.24260 4.35782 4.41293 4.43932 4.51023 4.57804 4.63297 4.66500 4.73686 4.81406 4.84227 4.87038 4.92540 5.01993 5.04610 5.21435 5.36202 5.44073 5.56701 5.65607 5.75032 5.98575 6.32442 6.48219 7.03076 7.15303 7.20232 7.86563 8.26652 9.18071 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026685 B = 0.003625 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.044546 B = 7721.462613 C = 8406.555264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.617 5.617 3 C -0.262 4.262 4 H 0.060 0.940 5 C -0.049 4.049 6 N -0.935 5.935 7 Si 0.964 3.036 8 H -0.272 1.272 9 H -0.286 1.286 10 H -0.292 1.292 11 C 0.148 3.852 12 C 0.111 3.889 13 N -0.605 5.605 14 C 0.065 3.935 15 C 0.514 3.486 16 O -0.581 6.581 17 C -0.106 4.106 18 H 0.156 0.844 19 C -0.135 4.135 20 C 0.512 3.488 21 O -0.576 6.576 22 N -0.621 5.621 23 C 0.089 3.911 24 C 0.115 3.885 25 H 0.006 0.994 26 H 0.017 0.983 27 H 0.037 0.963 28 H 0.249 0.751 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.141 0.859 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.865 -19.275 -1.396 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.341 5.341 3 C -0.392 4.392 4 H 0.078 0.922 5 C -0.244 4.244 6 N -0.582 5.582 7 Si 0.793 3.207 8 H -0.197 1.197 9 H -0.212 1.212 10 H -0.219 1.219 11 C 0.021 3.979 12 C -0.015 4.015 13 N -0.337 5.337 14 C -0.076 4.076 15 C 0.302 3.698 16 O -0.461 6.461 17 C -0.127 4.127 18 H 0.173 0.827 19 C -0.175 4.175 20 C 0.301 3.699 21 O -0.456 6.456 22 N -0.354 5.354 23 C -0.052 4.052 24 C -0.008 4.008 25 H 0.025 0.975 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.159 0.841 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.088 0.912 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.256 -19.089 -0.964 21.237 hybrid contribution 0.232 1.529 0.285 1.573 sum 9.488 -17.560 -0.678 19.971 Atomic orbital electron populations 1.20603 0.81991 0.96399 0.97812 1.44176 1.02494 1.01446 1.85983 1.19482 0.97752 0.86844 1.35128 0.92181 1.25709 0.98428 1.01584 0.98685 1.70212 1.18986 1.27395 1.41602 0.85247 0.78064 0.80327 0.77107 1.19651 1.21202 1.21905 1.21159 0.95272 0.87106 0.94337 1.22010 0.95253 0.84356 0.99858 1.48007 1.05538 1.08240 1.71943 1.22246 0.98186 0.83670 1.03548 1.20701 0.82490 0.90882 0.75695 1.90748 1.68524 1.35337 1.51465 1.22234 0.94950 0.94244 1.01318 0.82698 1.22408 0.96423 1.01516 0.97135 1.21181 0.88226 0.81305 0.79193 1.90704 1.85154 1.31932 1.37807 1.48373 1.09509 1.36063 1.41432 1.21744 0.78449 1.01030 1.03965 1.22060 0.91342 0.90461 0.96929 0.97548 0.96380 0.94473 0.94203 0.95209 0.91356 0.90833 0.94301 0.90878 0.90054 0.87893 0.84100 0.88128 0.92446 0.91032 0.88125 0.91150 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.48 9.01 127.77 1.15 9.63 16 2 N -0.62 -31.03 2.93 -726.92 -2.13 -33.16 16 3 C -0.26 -14.87 9.67 84.03 0.81 -14.06 16 4 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 5 C -0.05 -2.80 5.13 84.86 0.44 -2.36 16 6 N -0.94 -55.41 10.59 21.65 0.23 -55.18 16 7 Si 0.96 46.42 29.57 68.60 2.03 48.45 16 8 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 9 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 10 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 11 C 0.15 5.90 6.03 86.38 0.52 6.42 16 12 C 0.11 4.02 5.73 86.38 0.49 4.51 16 13 N -0.61 -15.40 2.87 -846.75 -2.43 -17.84 16 14 C 0.06 0.90 9.20 127.77 1.18 2.07 16 15 C 0.51 13.73 6.97 87.66 0.61 14.34 16 16 O -0.58 -22.01 15.08 -3.03 -0.05 -22.05 16 17 C -0.11 -1.71 2.55 -10.40 -0.03 -1.73 16 18 H 0.16 1.37 7.25 -2.39 -0.02 1.35 16 19 C -0.13 -2.15 5.49 30.67 0.17 -1.98 16 20 C 0.51 11.33 8.02 87.90 0.71 12.03 16 21 O -0.58 -17.23 17.60 -3.03 -0.05 -17.28 16 22 N -0.62 -11.46 3.33 -842.88 -2.81 -14.27 16 23 C 0.09 1.26 10.96 127.77 1.40 2.66 16 24 C 0.11 2.00 6.70 86.83 0.58 2.58 16 25 H 0.01 0.32 7.42 -2.39 -0.02 0.31 16 26 H 0.02 0.93 7.19 -2.39 -0.02 0.92 16 27 H 0.04 1.45 7.84 -2.39 -0.02 1.43 16 28 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.03 1.27 8.03 -2.39 -0.02 1.25 16 30 H 0.07 2.26 7.86 -2.39 -0.02 2.24 16 31 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 32 H 0.04 1.78 7.42 -2.39 -0.02 1.76 16 33 H 0.07 0.82 8.13 -2.39 -0.02 0.81 16 34 H 0.08 1.09 8.07 -2.39 -0.02 1.08 16 35 H 0.10 0.74 6.12 -2.39 -0.01 0.72 16 36 H 0.14 1.40 7.58 -2.39 -0.02 1.39 16 37 H 0.10 1.86 7.90 -2.39 -0.02 1.84 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 1.08 7.93 -2.38 -0.02 1.06 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 1.63 6.96 -2.39 -0.02 1.61 16 42 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -78.86 343.11 3.82 -75.04 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.00 Total: 2.19 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: 8.03 Total: 34.10 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -7.14 Total: -120.45 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.10 Total: -39.33 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -78.86 3.82 -75.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667574447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.833 kcal (2) G-P(sol) polarization free energy of solvation -78.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds