Wall clock time and date at job start Tue Mar 31 2020 03:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99974 * 2 1 4 4 H 1.08006 * 119.99875 * 145.78336 * 3 2 1 5 5 C 1.38810 * 119.99824 * 325.78394 * 3 2 1 6 6 N 1.31609 * 120.00276 * 4.43195 * 5 3 2 7 7 Si 1.86802 * 119.99784 * 184.42924 * 5 3 2 8 8 H 1.48507 * 109.47237 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46995 * 119.99916 * 7 5 3 10 10 H 1.48495 * 109.47303 * 240.00030 * 7 5 3 11 11 C 1.46505 * 119.99984 * 179.71988 * 2 1 3 12 12 C 1.53000 * 109.47248 * 270.27506 * 11 2 1 13 13 N 1.46496 * 109.46970 * 179.97438 * 12 11 2 14 14 C 1.46500 * 120.00033 * 90.00422 * 13 12 11 15 15 C 1.34777 * 120.00542 * 270.00269 * 13 12 11 16 16 O 1.21281 * 119.99520 * 5.40631 * 15 13 12 17 17 C 1.50695 * 120.00460 * 185.40334 * 15 13 12 18 18 H 1.09007 * 110.43517 * 44.97841 * 17 15 13 19 19 C 1.54629 * 110.48717 * 167.51318 * 17 15 13 20 20 C 1.54689 * 101.66960 * 143.39671 * 19 17 15 21 21 N 1.46767 * 105.53272 * 334.74170 * 20 19 17 22 22 C 1.46503 * 124.35133 * 196.89628 * 21 20 19 23 23 C 1.34413 * 111.30214 * 16.92357 * 21 20 19 24 24 O 1.21283 * 124.94960 * 179.62809 * 23 21 20 25 25 H 1.09003 * 109.46547 * 94.76105 * 1 2 3 26 26 H 1.09005 * 109.46865 * 214.76141 * 1 2 3 27 27 H 1.08992 * 109.47066 * 334.76314 * 1 2 3 28 28 H 0.96998 * 120.00411 * 180.02562 * 6 5 3 29 29 H 1.08999 * 109.46608 * 30.27946 * 11 2 1 30 30 H 1.09000 * 109.46823 * 150.27614 * 11 2 1 31 31 H 1.08994 * 109.47224 * 300.00324 * 12 11 2 32 32 H 1.09006 * 109.46455 * 60.00146 * 12 11 2 33 33 H 1.09001 * 109.47112 * 95.62499 * 14 13 12 34 34 H 1.08999 * 109.47627 * 215.63107 * 14 13 12 35 35 H 1.09007 * 109.46766 * 335.63355 * 14 13 12 36 36 H 1.09003 * 110.97231 * 261.59753 * 19 17 15 37 37 H 1.09001 * 110.97102 * 25.36027 * 19 17 15 38 38 H 1.09000 * 110.30035 * 215.68221 * 20 19 17 39 39 H 1.09002 * 110.21439 * 93.75767 * 20 19 17 40 40 H 1.08991 * 109.47292 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.47357 * 300.00652 * 22 21 20 42 42 H 1.09010 * 109.46373 * 60.00169 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0895 1.2669 0.5260 5 6 1.6358 2.2840 -0.6760 6 7 0.4503 2.2120 -1.2431 7 14 2.6268 3.8640 -0.7807 8 1 3.9171 3.6873 -0.0669 9 1 2.8904 4.1895 -2.2054 10 1 1.8612 4.9710 -0.1534 11 6 2.1975 -1.2688 0.0062 12 6 2.4465 -1.7069 1.4508 13 7 3.1785 -2.9759 1.4570 14 6 4.6435 -2.9765 1.4629 15 6 2.5042 -4.1428 1.4572 16 8 1.2959 -4.1449 1.3533 17 6 3.2516 -5.4450 1.5863 18 1 4.0030 -5.3761 2.3731 19 6 2.2712 -6.6055 1.8746 20 6 2.9116 -7.7626 1.0722 21 7 3.6858 -7.1191 0.0043 22 6 4.1678 -7.8063 -1.1964 23 6 3.8963 -5.8184 0.2696 24 8 4.5128 -5.0548 -0.4430 25 1 -0.3632 -0.0853 -1.0242 26 1 -0.3633 -0.8443 0.5860 27 1 -0.3633 0.9295 0.4381 28 1 0.0914 2.9792 -1.7158 29 1 1.6106 -2.0296 -0.5083 30 1 3.1521 -1.1396 -0.5040 31 1 3.0334 -0.9460 1.9652 32 1 1.4919 -1.8359 1.9609 33 1 5.0026 -3.0748 2.4874 34 1 5.0090 -3.8133 0.8678 35 1 5.0089 -2.0415 1.0381 36 1 2.2419 -6.8359 2.9396 37 1 1.2740 -6.3761 1.4990 38 1 2.1376 -8.4003 0.6452 39 1 3.5694 -8.3477 1.7149 40 1 4.7125 -7.1015 -1.8245 41 1 4.8299 -8.6225 -0.9069 42 1 3.3191 -8.2064 -1.7514 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667612058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:33 Heat of formation + Delta-G solvation = -53.525630 kcal Electronic energy + Delta-G solvation = -23179.033172 eV Core-core repulsion = 19773.619006 eV Total energy + Delta-G solvation = -3405.414166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.13505 -40.19343 -37.97452 -37.52256 -36.34291 -34.03450 -33.36850 -30.56348 -28.87206 -28.00967 -27.73671 -27.38587 -25.36839 -23.26872 -22.30757 -21.27507 -19.79192 -18.84582 -18.46766 -17.94645 -17.49588 -17.26216 -16.69556 -16.29733 -15.87115 -15.56027 -15.21485 -14.95624 -14.72172 -14.41750 -14.26417 -14.06940 -13.92798 -13.69887 -13.42486 -13.22441 -13.05991 -13.03181 -12.83461 -12.73364 -12.66859 -12.47849 -12.22618 -12.00067 -11.95634 -11.65505 -11.04697 -10.89315 -10.65121 -9.79557 -9.71610 -8.64532 -7.91429 -5.49023 1.14753 1.45212 1.46934 1.54187 1.58072 1.98036 2.13278 2.48716 3.23649 3.25036 3.26607 3.63810 3.77151 3.95242 4.05945 4.16769 4.35219 4.36713 4.40827 4.42617 4.61304 4.65221 4.70415 4.72048 4.82554 4.86963 4.87690 4.97162 5.01456 5.09272 5.18717 5.27517 5.50151 5.52838 5.57187 5.61881 5.96445 6.34162 6.38451 6.98706 7.06052 7.11743 7.75665 8.30066 9.15279 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029131 B = 0.003747 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.940375 B = 7470.920414 C = 7687.285257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.617 5.617 3 C -0.276 4.276 4 H 0.073 0.927 5 C -0.044 4.044 6 N -0.937 5.937 7 Si 0.976 3.024 8 H -0.261 1.261 9 H -0.290 1.290 10 H -0.287 1.287 11 C 0.151 3.849 12 C 0.114 3.886 13 N -0.602 5.602 14 C 0.057 3.943 15 C 0.518 3.482 16 O -0.576 6.576 17 C -0.141 4.141 18 H 0.163 0.837 19 C -0.116 4.116 20 C 0.104 3.896 21 N -0.619 5.619 22 C 0.088 3.912 23 C 0.516 3.484 24 O -0.555 6.555 25 H -0.010 1.010 26 H 0.011 0.989 27 H 0.038 0.962 28 H 0.251 0.749 29 H 0.017 0.983 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.906 -24.344 8.660 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.341 5.341 3 C -0.405 4.405 4 H 0.091 0.909 5 C -0.240 4.240 6 N -0.582 5.582 7 Si 0.803 3.197 8 H -0.185 1.185 9 H -0.217 1.217 10 H -0.214 1.214 11 C 0.024 3.976 12 C -0.012 4.012 13 N -0.333 5.333 14 C -0.085 4.085 15 C 0.306 3.694 16 O -0.456 6.456 17 C -0.165 4.165 18 H 0.180 0.820 19 C -0.154 4.154 20 C -0.018 4.018 21 N -0.352 5.352 22 C -0.053 4.053 23 C 0.303 3.697 24 O -0.435 6.435 25 H 0.009 0.991 26 H 0.029 0.971 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.544 -23.890 8.064 26.960 hybrid contribution 0.010 1.332 -0.600 1.461 sum 9.553 -22.558 7.464 25.609 Atomic orbital electron populations 1.20507 0.83221 0.96736 0.95954 1.43986 1.01863 1.01398 1.86899 1.19531 1.05264 0.89114 1.26638 0.90939 1.26209 0.97918 1.02953 0.96938 1.70220 1.17932 1.30958 1.39119 0.85089 0.78748 0.78693 0.77203 1.18481 1.21717 1.21364 1.20976 0.95039 0.86725 0.94854 1.21946 0.96462 0.84026 0.98719 1.47914 1.08547 1.05395 1.71461 1.22389 0.77338 1.05289 1.03438 1.20531 0.87329 0.85794 0.75761 1.90679 1.15985 1.87481 1.51406 1.22214 1.01362 0.93738 0.99202 0.81978 1.22759 0.97928 0.90701 1.04028 1.22467 0.95894 0.95192 0.88202 1.48304 1.54424 1.09484 1.22979 1.21769 1.00566 0.97580 0.85365 1.20607 0.79333 0.82889 0.86852 1.90673 1.43953 1.54476 1.54353 0.99130 0.97103 0.94359 0.93932 0.96502 0.94099 0.89920 0.92322 0.89949 0.88549 0.91367 0.85283 0.90596 0.88150 0.87092 0.91863 0.88864 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.16 8.99 127.77 1.15 11.30 16 2 N -0.62 -34.57 2.91 -726.92 -2.11 -36.69 16 3 C -0.28 -15.97 9.54 84.03 0.80 -15.16 16 4 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 5 C -0.04 -2.59 5.33 84.86 0.45 -2.14 16 6 N -0.94 -58.12 10.69 21.65 0.23 -57.89 16 7 Si 0.98 46.03 29.56 68.60 2.03 48.06 16 8 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 10 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 11 C 0.15 7.36 6.01 86.38 0.52 7.88 16 12 C 0.11 4.58 5.67 86.38 0.49 5.07 16 13 N -0.60 -20.02 2.87 -846.77 -2.43 -22.45 16 14 C 0.06 1.47 9.74 127.77 1.24 2.72 16 15 C 0.52 16.86 6.87 87.66 0.60 17.47 16 16 O -0.58 -23.31 15.13 -3.03 -0.05 -23.35 16 17 C -0.14 -2.95 2.46 -11.55 -0.03 -2.98 16 18 H 0.16 2.24 7.75 -2.38 -0.02 2.22 16 19 C -0.12 -1.68 6.59 31.72 0.21 -1.47 16 20 C 0.10 0.97 7.35 86.90 0.64 1.61 16 21 N -0.62 -10.57 3.33 -842.46 -2.81 -13.37 16 22 C 0.09 1.15 11.14 127.77 1.42 2.58 16 23 C 0.52 12.73 7.14 87.90 0.63 13.36 16 24 O -0.55 -18.14 14.32 -3.04 -0.04 -18.18 16 25 H -0.01 -0.58 7.79 -2.39 -0.02 -0.60 16 26 H 0.01 0.55 8.11 -2.38 -0.02 0.53 16 27 H 0.04 2.24 6.98 -2.39 -0.02 2.23 16 28 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.02 0.86 8.07 -2.39 -0.02 0.84 16 30 H 0.04 2.00 8.04 -2.39 -0.02 1.98 16 31 H 0.08 3.17 8.07 -2.39 -0.02 3.15 16 32 H 0.06 2.55 7.50 -2.38 -0.02 2.53 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 2.56 4.02 -2.39 -0.01 2.55 16 35 H 0.07 1.87 8.03 -2.38 -0.02 1.85 16 36 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.60 6.89 -2.39 -0.02 1.58 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.06 1.12 7.53 -2.39 -0.02 1.11 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -81.03 340.74 3.94 -77.09 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.00 Total: 6.57 kcal Atomic # 6 Polarization: 32.10 SS G_CDS: 8.13 Total: 40.23 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -7.12 Total: -130.41 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.09 Total: -41.53 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -81.03 3.94 -77.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667612058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.560 kcal (2) G-P(sol) polarization free energy of solvation -81.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds