Wall clock time and date at job start Tue Mar 31 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 119.99677 * 2 1 4 4 H 1.07996 * 120.00439 * 318.96656 * 3 2 1 5 5 C 1.38808 * 119.99776 * 138.96859 * 3 2 1 6 6 N 1.31620 * 120.00049 * 175.17682 * 5 3 2 7 7 Si 1.86799 * 120.00162 * 355.17847 * 5 3 2 8 8 H 1.48500 * 109.47381 * 92.30149 * 7 5 3 9 9 H 1.48498 * 109.47273 * 212.30132 * 7 5 3 10 10 H 1.48506 * 109.47192 * 332.29978 * 7 5 3 11 11 C 1.46496 * 120.00267 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47406 * 89.99666 * 11 2 1 13 13 N 1.46500 * 109.46884 * 180.02562 * 12 11 2 14 14 C 1.46498 * 119.99975 * 269.99393 * 13 12 11 15 15 C 1.34781 * 119.99984 * 90.00443 * 13 12 11 16 16 O 1.21280 * 119.99958 * 4.78269 * 15 13 12 17 17 C 1.50700 * 120.00018 * 184.78360 * 15 13 12 18 18 H 1.08999 * 110.43378 * 310.89268 * 17 15 13 19 19 C 1.54629 * 110.48480 * 188.34756 * 17 15 13 20 20 C 1.54482 * 101.76595 * 265.98769 * 19 17 15 21 21 N 1.46767 * 105.47351 * 334.58889 * 20 19 17 22 22 C 1.46496 * 124.34843 * 197.02037 * 21 20 19 23 23 C 1.34416 * 111.30300 * 17.27675 * 21 20 19 24 24 O 1.21278 * 124.94851 * 179.30037 * 23 21 20 25 25 H 1.08998 * 109.47178 * 265.03806 * 1 2 3 26 26 H 1.08998 * 109.47062 * 25.03328 * 1 2 3 27 27 H 1.09002 * 109.47454 * 145.03531 * 1 2 3 28 28 H 0.97001 * 120.00243 * 180.02562 * 6 5 3 29 29 H 1.09007 * 109.46656 * 329.99662 * 11 2 1 30 30 H 1.09005 * 109.46956 * 209.99942 * 11 2 1 31 31 H 1.08997 * 109.47116 * 60.00232 * 12 11 2 32 32 H 1.08996 * 109.47109 * 299.99961 * 12 11 2 33 33 H 1.08999 * 109.47852 * 263.89075 * 14 13 12 34 34 H 1.09000 * 109.47111 * 23.89879 * 14 13 12 35 35 H 1.09004 * 109.46613 * 143.89273 * 14 13 12 36 36 H 1.08999 * 110.96493 * 147.87027 * 19 17 15 37 37 H 1.08995 * 110.97015 * 24.10934 * 19 17 15 38 38 H 1.08995 * 110.24925 * 215.58606 * 20 19 17 39 39 H 1.08997 * 110.24664 * 93.58531 * 20 19 17 40 40 H 1.08995 * 109.47948 * 89.99399 * 22 21 20 41 41 H 1.09005 * 109.46890 * 209.99890 * 22 21 20 42 42 H 1.09001 * 109.47185 * 329.99119 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.8086 2.0064 -0.6140 5 6 3.2819 1.3337 0.7892 6 7 3.9941 2.4383 0.7182 7 14 3.7952 -0.0353 1.9518 8 1 4.7552 -0.9353 1.2637 9 1 4.4410 0.5517 3.1533 10 1 2.5972 -0.8108 2.3629 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 7 3.1845 -2.9788 -1.4436 14 6 4.6495 -2.9793 -1.4436 15 6 2.5102 -4.1457 -1.4443 16 8 1.3005 -4.1471 -1.5321 17 6 3.2592 -5.4489 -1.3359 18 1 4.0824 -5.4752 -2.0498 19 6 2.3041 -6.6429 -1.5669 20 6 1.8927 -7.0013 -0.1216 21 7 2.9929 -6.5291 0.7273 22 6 3.2128 -6.9588 2.1104 23 6 3.7697 -5.6475 0.0744 24 8 4.7400 -5.0938 0.5463 25 1 -0.3633 -0.0889 1.0238 26 1 -0.3633 0.9311 -0.4348 27 1 -0.3634 -0.8422 -0.5889 28 1 4.7856 2.5414 1.2694 29 1 1.6084 -2.0285 0.5130 30 1 3.1500 -1.1385 0.5133 31 1 3.0415 -0.9499 -1.9567 32 1 1.5001 -1.8400 -1.9570 33 1 5.0129 -3.0884 -2.4654 34 1 5.0132 -2.0400 -1.0269 35 1 5.0124 -3.8100 -0.8382 36 1 2.8262 -7.4738 -2.0412 37 1 1.4379 -6.3412 -2.1556 38 1 1.7738 -8.0799 -0.0197 39 1 0.9662 -6.4923 0.1440 40 1 3.8565 -7.8384 2.1198 41 1 3.6896 -6.1537 2.6696 42 1 2.2559 -7.2040 2.5712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667612059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:36 Heat of formation + Delta-G solvation = -20.010676 kcal Electronic energy + Delta-G solvation = -23904.463804 eV Core-core repulsion = 20500.502955 eV Total energy + Delta-G solvation = -3403.960849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.20780 -38.99912 -36.86383 -36.18539 -34.84659 -33.06973 -31.61989 -29.51509 -27.96412 -26.96759 -26.51370 -25.86430 -23.86263 -22.10786 -20.87102 -20.26861 -18.88123 -17.61193 -17.00127 -16.75218 -16.14540 -15.99089 -15.39707 -15.21949 -14.84981 -14.06810 -13.90809 -13.72549 -13.39693 -13.13216 -13.03662 -12.85424 -12.74938 -12.68084 -12.60136 -12.41523 -11.91455 -11.73817 -11.59366 -11.48195 -11.43439 -10.97331 -10.57656 -10.51939 -9.95444 -9.80757 -9.68750 -9.31891 -8.95826 -8.59211 -8.39942 -6.76169 -5.95178 -3.49477 2.15124 2.60452 2.87784 3.23454 3.33220 3.47892 3.51209 4.07804 4.16211 4.45033 4.50528 4.69377 4.84318 4.99819 5.13013 5.19345 5.23791 5.31071 5.35044 5.48987 5.54440 5.60492 5.66458 5.71122 5.77384 6.04491 6.12991 6.22775 6.27108 6.37432 6.43543 6.52560 6.71118 6.77278 6.80812 6.90372 7.59718 7.90144 8.10041 8.25182 8.38967 8.96694 9.69772 10.12000 11.19012 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.005778 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.608080 B = 4845.139515 C = 5260.012482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.613 5.613 3 C -0.270 4.270 4 H 0.082 0.918 5 C 0.032 3.968 6 N -0.910 5.910 7 Si 0.903 3.097 8 H -0.284 1.284 9 H -0.306 1.306 10 H -0.276 1.276 11 C 0.132 3.868 12 C 0.093 3.907 13 N -0.599 5.599 14 C 0.049 3.951 15 C 0.526 3.474 16 O -0.535 6.535 17 C -0.150 4.150 18 H 0.129 0.871 19 C -0.116 4.116 20 C 0.102 3.898 21 N -0.620 5.620 22 C 0.096 3.904 23 C 0.529 3.471 24 O -0.512 6.512 25 H 0.007 0.993 26 H 0.047 0.953 27 H 0.029 0.971 28 H 0.264 0.736 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -22.262 -3.591 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.338 5.338 3 C -0.399 4.399 4 H 0.100 0.900 5 C -0.168 4.168 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.212 1.212 9 H -0.234 1.234 10 H -0.201 1.201 11 C 0.006 3.994 12 C -0.031 4.031 13 N -0.331 5.331 14 C -0.093 4.093 15 C 0.311 3.689 16 O -0.413 6.413 17 C -0.175 4.175 18 H 0.147 0.853 19 C -0.154 4.154 20 C -0.021 4.021 21 N -0.354 5.354 22 C -0.046 4.046 23 C 0.315 3.685 24 O -0.388 6.388 25 H 0.026 0.974 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.422 -21.841 -3.220 22.123 hybrid contribution 0.596 -0.658 0.671 1.113 sum -0.826 -22.499 -2.548 22.658 Atomic orbital electron populations 1.21072 0.83893 0.99192 0.97548 1.43984 1.01132 1.01499 1.87202 1.18877 1.08909 0.90672 1.21472 0.90021 1.25517 0.98397 0.96167 0.96703 1.69749 1.17613 1.26103 1.41739 0.86583 0.78045 0.81273 0.80467 1.21197 1.23444 1.20134 1.21463 0.95970 0.88398 0.93594 1.22477 0.97092 0.82398 1.01106 1.47949 1.07593 1.06325 1.71230 1.22364 0.79108 1.05981 1.01893 1.19667 0.87513 0.84390 0.77294 1.90670 1.13476 1.86835 1.50306 1.22172 1.01572 0.95966 0.97799 0.85341 1.22568 1.00319 0.95748 0.96753 1.22173 0.90135 1.00120 0.89641 1.48107 1.28963 1.44425 1.13919 1.21577 1.01979 1.00595 0.80432 1.20275 0.82529 0.78478 0.87221 1.90688 1.26682 1.49322 1.72096 0.97436 0.93412 0.95260 0.92660 0.94136 0.93752 0.89705 0.90201 0.92823 0.90338 0.88433 0.89366 0.87356 0.90008 0.90223 0.92338 0.90483 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.77 10.70 59.85 0.64 3.41 16 2 N -0.61 -15.54 2.55 -181.12 -0.46 -16.00 16 3 C -0.27 -7.80 10.01 -15.06 -0.15 -7.95 16 4 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 5 C 0.03 0.96 5.48 -17.43 -0.10 0.86 16 6 N -0.91 -28.30 13.97 55.49 0.78 -27.53 16 7 Si 0.90 24.07 24.56 -169.99 -4.18 19.90 16 8 H -0.28 -7.35 6.92 56.52 0.39 -6.96 16 9 H -0.31 -8.20 7.11 56.52 0.40 -7.80 16 10 H -0.28 -7.36 6.55 56.52 0.37 -6.99 16 11 C 0.13 3.13 4.42 -4.05 -0.02 3.11 16 12 C 0.09 1.90 5.74 -4.04 -0.02 1.88 16 13 N -0.60 -10.70 2.87 -181.58 -0.52 -11.22 16 14 C 0.05 0.78 9.94 59.85 0.59 1.38 16 15 C 0.53 8.65 6.97 -10.98 -0.08 8.57 16 16 O -0.54 -9.90 15.12 5.56 0.08 -9.81 16 17 C -0.15 -1.85 2.40 -91.78 -0.22 -2.07 16 18 H 0.13 1.30 7.66 -51.93 -0.40 0.90 16 19 C -0.12 -1.03 6.44 -25.10 -0.16 -1.19 16 20 C 0.10 0.91 7.34 -3.12 -0.02 0.88 16 21 N -0.62 -7.15 3.33 -180.29 -0.60 -7.75 16 22 C 0.10 0.89 10.97 59.84 0.66 1.54 16 23 C 0.53 7.55 7.13 -10.86 -0.08 7.48 16 24 O -0.51 -8.95 14.87 5.56 0.08 -8.87 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.05 0.99 8.00 -51.93 -0.42 0.57 16 27 H 0.03 0.57 8.11 -51.93 -0.42 0.15 16 28 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 29 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 30 H 0.04 1.14 2.35 -51.93 -0.12 1.02 16 31 H 0.08 1.78 8.07 -51.93 -0.42 1.36 16 32 H 0.08 1.63 7.36 -51.93 -0.38 1.25 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 35 H 0.10 1.55 3.91 -51.93 -0.20 1.35 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 1.03 7.09 -51.93 -0.37 0.66 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 335.33 15.07 5.05 5.05 Total: -1.00 -35.44 335.33 -5.25 -40.70 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.54 Total: -2.37 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: 1.05 Total: 17.91 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.81 Total: -62.50 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.17 Total: -18.69 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -4.18 Total: 19.90 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.44 -5.25 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667612059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.684 kcal (2) G-P(sol) polarization free energy of solvation -35.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds