Wall clock time and date at job start Tue Mar 31 2020 03:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 119.99677 * 2 1 4 4 H 1.07996 * 120.00439 * 318.96656 * 3 2 1 5 5 C 1.38808 * 119.99776 * 138.96859 * 3 2 1 6 6 N 1.31620 * 120.00049 * 175.17682 * 5 3 2 7 7 Si 1.86799 * 120.00162 * 355.17847 * 5 3 2 8 8 H 1.48500 * 109.47381 * 92.30149 * 7 5 3 9 9 H 1.48498 * 109.47273 * 212.30132 * 7 5 3 10 10 H 1.48506 * 109.47192 * 332.29978 * 7 5 3 11 11 C 1.46496 * 120.00267 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47406 * 89.99666 * 11 2 1 13 13 N 1.46500 * 109.46884 * 180.02562 * 12 11 2 14 14 C 1.46498 * 119.99975 * 269.99393 * 13 12 11 15 15 C 1.34781 * 119.99984 * 90.00443 * 13 12 11 16 16 O 1.21280 * 119.99958 * 4.78269 * 15 13 12 17 17 C 1.50700 * 120.00018 * 184.78360 * 15 13 12 18 18 H 1.08999 * 110.43378 * 310.89268 * 17 15 13 19 19 C 1.54629 * 110.48480 * 188.34756 * 17 15 13 20 20 C 1.54482 * 101.76595 * 265.98769 * 19 17 15 21 21 N 1.46767 * 105.47351 * 334.58889 * 20 19 17 22 22 C 1.46496 * 124.34843 * 197.02037 * 21 20 19 23 23 C 1.34416 * 111.30300 * 17.27675 * 21 20 19 24 24 O 1.21278 * 124.94851 * 179.30037 * 23 21 20 25 25 H 1.08998 * 109.47178 * 265.03806 * 1 2 3 26 26 H 1.08998 * 109.47062 * 25.03328 * 1 2 3 27 27 H 1.09002 * 109.47454 * 145.03531 * 1 2 3 28 28 H 0.97001 * 120.00243 * 180.02562 * 6 5 3 29 29 H 1.09007 * 109.46656 * 329.99662 * 11 2 1 30 30 H 1.09005 * 109.46956 * 209.99942 * 11 2 1 31 31 H 1.08997 * 109.47116 * 60.00232 * 12 11 2 32 32 H 1.08996 * 109.47109 * 299.99961 * 12 11 2 33 33 H 1.08999 * 109.47852 * 263.89075 * 14 13 12 34 34 H 1.09000 * 109.47111 * 23.89879 * 14 13 12 35 35 H 1.09004 * 109.46613 * 143.89273 * 14 13 12 36 36 H 1.08999 * 110.96493 * 147.87027 * 19 17 15 37 37 H 1.08995 * 110.97015 * 24.10934 * 19 17 15 38 38 H 1.08995 * 110.24925 * 215.58606 * 20 19 17 39 39 H 1.08997 * 110.24664 * 93.58531 * 20 19 17 40 40 H 1.08995 * 109.47948 * 89.99399 * 22 21 20 41 41 H 1.09005 * 109.46890 * 209.99890 * 22 21 20 42 42 H 1.09001 * 109.47185 * 329.99119 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.8086 2.0064 -0.6140 5 6 3.2819 1.3337 0.7892 6 7 3.9941 2.4383 0.7182 7 14 3.7952 -0.0353 1.9518 8 1 4.7552 -0.9353 1.2637 9 1 4.4410 0.5517 3.1533 10 1 2.5972 -0.8108 2.3629 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 7 3.1845 -2.9788 -1.4436 14 6 4.6495 -2.9793 -1.4436 15 6 2.5102 -4.1457 -1.4443 16 8 1.3005 -4.1471 -1.5321 17 6 3.2592 -5.4489 -1.3359 18 1 4.0824 -5.4752 -2.0498 19 6 2.3041 -6.6429 -1.5669 20 6 1.8927 -7.0013 -0.1216 21 7 2.9929 -6.5291 0.7273 22 6 3.2128 -6.9588 2.1104 23 6 3.7697 -5.6475 0.0744 24 8 4.7400 -5.0938 0.5463 25 1 -0.3633 -0.0889 1.0238 26 1 -0.3633 0.9311 -0.4348 27 1 -0.3634 -0.8422 -0.5889 28 1 4.7856 2.5414 1.2694 29 1 1.6084 -2.0285 0.5130 30 1 3.1500 -1.1385 0.5133 31 1 3.0415 -0.9499 -1.9567 32 1 1.5001 -1.8400 -1.9570 33 1 5.0129 -3.0884 -2.4654 34 1 5.0132 -2.0400 -1.0269 35 1 5.0124 -3.8100 -0.8382 36 1 2.8262 -7.4738 -2.0412 37 1 1.4379 -6.3412 -2.1556 38 1 1.7738 -8.0799 -0.0197 39 1 0.9662 -6.4923 0.1440 40 1 3.8565 -7.8384 2.1198 41 1 3.6896 -6.1537 2.6696 42 1 2.2559 -7.2040 2.5712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667612059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:35 Heat of formation + Delta-G solvation = -45.466501 kcal Electronic energy + Delta-G solvation = -23905.567651 eV Core-core repulsion = 20500.502955 eV Total energy + Delta-G solvation = -3405.064696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.26214 -40.26067 -38.29427 -37.61030 -36.37074 -34.06605 -33.75053 -31.06210 -28.98322 -28.26308 -27.76649 -27.51478 -25.40170 -23.31765 -22.73473 -21.32432 -20.01704 -18.96081 -18.76288 -17.98594 -17.71352 -17.16083 -16.98392 -16.47926 -16.12252 -15.58680 -15.25350 -14.89339 -14.81809 -14.78203 -14.48488 -14.36418 -14.16101 -13.80108 -13.62552 -13.55395 -13.39118 -13.35856 -13.04677 -12.93142 -12.52183 -12.45127 -12.37375 -12.19919 -11.93239 -11.39242 -11.13804 -10.96127 -10.79901 -9.87063 -9.80789 -8.82782 -8.25540 -5.77440 1.02160 1.19367 1.28401 1.36906 1.48514 1.89803 2.01628 2.27856 3.04519 3.17683 3.25904 3.32595 3.47996 3.86555 3.94690 4.14580 4.19280 4.24228 4.29800 4.36915 4.38295 4.57162 4.58942 4.64765 4.66118 4.68162 4.79528 4.82500 4.89054 4.96799 5.00341 5.04340 5.10262 5.35113 5.44103 5.88258 5.90901 6.08538 6.26343 6.83827 6.91183 6.94173 7.48102 7.93565 8.91809 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.005778 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.608080 B = 4845.139515 C = 5260.012482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.627 5.627 3 C -0.258 4.258 4 H 0.055 0.945 5 C -0.014 4.014 6 N -0.949 5.949 7 Si 0.958 3.042 8 H -0.278 1.278 9 H -0.308 1.308 10 H -0.277 1.277 11 C 0.135 3.865 12 C 0.108 3.892 13 N -0.609 5.609 14 C 0.052 3.948 15 C 0.523 3.477 16 O -0.558 6.558 17 C -0.146 4.146 18 H 0.153 0.847 19 C -0.107 4.107 20 C 0.097 3.903 21 N -0.618 5.618 22 C 0.089 3.911 23 C 0.515 3.485 24 O -0.555 6.555 25 H 0.014 0.986 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.265 0.735 29 H 0.039 0.961 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 -25.615 -4.110 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.353 5.353 3 C -0.388 4.388 4 H 0.073 0.927 5 C -0.210 4.210 6 N -0.593 5.593 7 Si 0.791 3.209 8 H -0.205 1.205 9 H -0.237 1.237 10 H -0.203 1.203 11 C 0.009 3.991 12 C -0.017 4.017 13 N -0.341 5.341 14 C -0.090 4.090 15 C 0.310 3.690 16 O -0.437 6.437 17 C -0.171 4.171 18 H 0.171 0.829 19 C -0.144 4.144 20 C -0.024 4.024 21 N -0.351 5.351 22 C -0.051 4.051 23 C 0.302 3.698 24 O -0.435 6.435 25 H 0.032 0.968 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.140 0.860 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.984 -25.259 -3.746 25.613 hybrid contribution 0.649 0.345 0.808 1.092 sum -1.335 -24.915 -2.938 25.123 Atomic orbital electron populations 1.21176 0.81677 1.00496 0.98364 1.44131 1.02610 1.00958 1.87588 1.18777 1.08691 0.91263 1.20096 0.92738 1.26027 0.98830 0.97936 0.98241 1.69847 1.18469 1.27898 1.43111 0.85676 0.77635 0.78987 0.78606 1.20535 1.23711 1.20317 1.21407 0.94696 0.87539 0.95470 1.22004 0.97403 0.83764 0.98494 1.48015 1.08318 1.05932 1.71863 1.22418 0.77952 1.04693 1.03944 1.20357 0.87478 0.85187 0.75969 1.90653 1.14639 1.87367 1.51023 1.22241 1.02703 0.94615 0.97497 0.82940 1.22672 0.99612 0.95228 0.96913 1.22406 0.88563 1.02319 0.89122 1.48359 1.28630 1.43343 1.14723 1.21759 1.03633 1.00429 0.79329 1.20646 0.82441 0.78689 0.88058 1.90658 1.28678 1.51070 1.73054 0.96817 0.92917 0.92996 0.92570 0.94233 0.95621 0.90696 0.90098 0.89393 0.92834 0.88132 0.85570 0.87865 0.86012 0.91505 0.90154 0.92908 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.35 10.70 127.77 1.37 6.72 16 2 N -0.63 -31.62 2.55 -726.95 -1.85 -33.48 16 3 C -0.26 -15.11 10.01 84.03 0.84 -14.27 16 4 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 5 C -0.01 -0.82 5.48 84.86 0.47 -0.35 16 6 N -0.95 -60.21 13.97 21.65 0.30 -59.91 16 7 Si 0.96 50.65 24.56 68.60 1.69 52.33 16 8 H -0.28 -14.23 6.92 99.48 0.69 -13.54 16 9 H -0.31 -16.22 7.11 99.48 0.71 -15.52 16 10 H -0.28 -14.53 6.55 99.48 0.65 -13.88 16 11 C 0.13 6.33 4.42 86.38 0.38 6.71 16 12 C 0.11 4.38 5.74 86.38 0.50 4.87 16 13 N -0.61 -21.09 2.87 -846.77 -2.43 -23.53 16 14 C 0.05 1.59 9.94 127.77 1.27 2.86 16 15 C 0.52 16.27 6.97 87.66 0.61 16.89 16 16 O -0.56 -19.74 15.12 -3.03 -0.05 -19.78 16 17 C -0.15 -3.20 2.40 -11.54 -0.03 -3.23 16 18 H 0.15 2.55 7.66 -2.39 -0.02 2.53 16 19 C -0.11 -1.47 6.44 31.65 0.20 -1.27 16 20 C 0.10 1.38 7.34 86.83 0.64 2.01 16 21 N -0.62 -12.63 3.33 -842.89 -2.81 -15.44 16 22 C 0.09 1.45 10.97 127.77 1.40 2.85 16 23 C 0.52 13.76 7.13 87.90 0.63 14.39 16 24 O -0.56 -19.04 14.87 -3.02 -0.04 -19.08 16 25 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 2.14 8.00 -2.39 -0.02 2.12 16 27 H 0.05 1.94 8.11 -2.39 -0.02 1.92 16 28 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.04 1.84 8.07 -2.38 -0.02 1.82 16 30 H 0.03 1.32 2.35 -2.38 -0.01 1.32 16 31 H 0.07 3.15 8.07 -2.39 -0.02 3.13 16 32 H 0.08 3.24 7.36 -2.39 -0.02 3.22 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 35 H 0.10 3.09 3.91 -2.38 -0.01 3.08 16 36 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 1.62 7.09 -2.39 -0.02 1.60 16 38 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 1.12 7.92 -2.38 -0.02 1.11 16 42 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -77.99 335.33 4.01 -73.98 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.93 Total: 6.73 kcal Atomic # 6 Polarization: 29.90 SS G_CDS: 8.27 Total: 38.17 kcal Atomic # 7 Polarization: -125.56 SS G_CDS: -6.79 Total: -132.35 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.09 Total: -38.86 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 1.69 Total: 52.33 kcal Total: -77.99 4.01 -73.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667612059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.518 kcal (2) G-P(sol) polarization free energy of solvation -77.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds