Wall clock time and date at job start Tue Mar 31 2020 02:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21277 * 120.00196 * 2 1 4 4 N 1.34772 * 120.00140 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00628 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.47628 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00188 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00075 * 180.02562 * 6 5 4 9 9 C 1.47019 * 125.64789 * 359.97157 * 8 6 5 10 10 C 1.54320 * 107.27236 * 181.10531 * 9 8 6 11 11 C 1.55166 * 102.94209 * 22.19556 * 10 9 8 12 12 H 1.08999 * 111.00205 * 82.60428 * 11 10 9 13 13 C 1.52992 * 111.00420 * 206.42346 * 11 10 9 14 14 C 1.53004 * 109.47319 * 293.54388 * 13 11 10 15 15 N 1.46499 * 109.47198 * 180.02562 * 14 13 11 16 16 C 1.36931 * 120.00122 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00098 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99535 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00187 * 180.27849 * 18 16 15 21 21 H 1.48497 * 109.47173 * 179.72427 * 20 18 16 22 22 H 1.48506 * 109.46866 * 299.71963 * 20 18 16 23 23 H 1.48501 * 109.47438 * 59.72083 * 20 18 16 24 24 C 1.47425 * 125.64641 * 180.02562 * 8 6 5 25 25 H 1.08995 * 109.47627 * 239.99884 * 1 2 3 26 26 H 1.09004 * 109.47170 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47170 * 119.99583 * 1 2 3 28 28 H 0.97001 * 120.00212 * 0.02562 * 4 2 1 29 29 H 1.09001 * 109.47092 * 59.99583 * 5 4 2 30 30 H 1.09003 * 109.46896 * 300.00477 * 5 4 2 31 31 H 1.08998 * 109.88094 * 61.69305 * 9 8 6 32 32 H 1.08997 * 110.01221 * 300.59932 * 9 8 6 33 33 H 1.08998 * 110.72428 * 263.83695 * 10 9 8 34 34 H 1.09001 * 110.87380 * 140.62892 * 10 9 8 35 35 H 1.09000 * 109.47364 * 173.54407 * 13 11 10 36 36 H 1.08998 * 109.47610 * 53.54470 * 13 11 10 37 37 H 1.08995 * 109.46638 * 60.00097 * 14 13 11 38 38 H 1.08998 * 109.46846 * 300.00550 * 14 13 11 39 39 H 0.97001 * 119.99790 * 359.97438 * 15 14 13 40 40 H 0.97005 * 119.99717 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36455 * 36.99069 * 24 8 6 42 42 H 1.08993 * 110.36942 * 274.66277 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 6 4.1482 -2.5881 -0.0010 7 8 3.3601 -3.5100 0.0000 8 7 5.4733 -2.8344 -0.0009 9 6 6.5340 -1.8164 -0.0015 10 6 7.8847 -2.5621 -0.0296 11 6 7.5044 -3.9481 -0.6144 12 1 7.4554 -3.9128 -1.7027 13 6 8.4826 -5.0276 -0.1471 14 6 9.8647 -4.7570 -0.7451 15 7 10.8012 -5.7911 -0.2980 16 6 12.1072 -5.7557 -0.7082 17 1 12.4469 -4.9652 -1.3610 18 6 12.9945 -6.7357 -0.2851 19 7 12.5805 -7.6989 0.5109 20 14 14.7778 -6.6830 -0.8384 21 1 15.5136 -7.8295 -0.2474 22 1 14.8391 -6.7662 -2.3199 23 1 15.3985 -5.4113 -0.3880 24 6 6.0990 -4.1692 -0.0013 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.6959 -2.0072 -0.0013 29 1 4.0096 -0.6536 0.8888 30 1 4.0088 -0.6532 -0.8911 31 1 6.4649 -1.2085 0.9006 32 1 6.4421 -1.1824 -0.8834 33 1 8.2889 -2.6662 0.9773 34 1 8.5966 -2.0519 -0.6785 35 1 8.1295 -6.0050 -0.4760 36 1 8.5482 -5.0123 0.9408 37 1 10.2178 -3.7797 -0.4161 38 1 9.7992 -4.7723 -1.8330 39 1 10.4963 -6.5004 0.2891 40 1 13.2007 -8.3836 0.8068 41 1 5.5211 -4.8589 -0.6165 42 1 6.1848 -4.5483 1.0169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672728836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:58 Heat of formation + Delta-G solvation = -69.620605 kcal Electronic energy + Delta-G solvation = -21549.769822 eV Core-core repulsion = 18143.657726 eV Total energy + Delta-G solvation = -3406.112097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.66072 -39.64780 -38.03981 -35.22777 -34.79826 -33.12956 -31.20050 -30.67573 -29.67503 -28.28971 -26.55491 -23.89215 -23.11016 -21.60525 -20.98011 -20.22049 -19.67904 -17.87803 -17.18981 -16.87170 -16.65746 -16.37967 -15.77747 -15.22724 -14.72797 -14.69350 -14.25631 -13.78206 -13.74415 -13.52465 -13.30760 -13.11891 -12.97287 -12.84336 -12.70075 -12.39794 -12.23989 -11.71112 -11.36599 -11.10541 -10.82927 -10.70686 -10.53959 -10.38377 -10.36591 -10.28587 -10.04745 -9.70027 -9.59321 -8.95803 -8.87673 -6.93499 -5.77548 -3.06449 2.17248 2.26077 2.36778 3.01709 3.43179 3.47401 3.48654 3.99715 4.39590 4.44215 4.52923 4.61018 4.72201 4.84645 4.87950 4.96790 4.98107 5.03240 5.19634 5.32974 5.41731 5.50655 5.56427 5.60451 5.71895 5.76029 5.81807 5.88363 5.99847 6.06040 6.20048 6.33066 6.34165 6.80634 6.85398 7.07371 7.14920 7.67929 7.69671 7.80473 8.41544 9.52307 10.10775 10.44849 11.45296 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.059901 B = 0.002252 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.328941 B =12432.414452 C =12769.930635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.721 5.721 5 C 0.103 3.897 6 C 0.523 3.477 7 O -0.542 6.542 8 N -0.612 5.612 9 C 0.094 3.906 10 C -0.127 4.127 11 C -0.094 4.094 12 H 0.086 0.914 13 C -0.116 4.116 14 C 0.155 3.845 15 N -0.735 5.735 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.291 1.291 22 H -0.286 1.286 23 H -0.286 1.286 24 C 0.109 3.891 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.413 0.587 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.080 0.920 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.144 14.037 -0.584 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.377 5.377 5 C -0.024 4.024 6 C 0.311 3.689 7 O -0.420 6.420 8 N -0.345 5.345 9 C -0.029 4.029 10 C -0.165 4.165 11 C -0.114 4.114 12 H 0.104 0.896 13 C -0.154 4.154 14 C 0.027 3.973 15 N -0.379 5.379 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.013 4.013 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.251 0.749 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.052 14.364 -0.651 26.326 hybrid contribution 0.836 -0.663 -0.084 1.070 sum -21.217 13.700 -0.735 25.267 Atomic orbital electron populations 1.21899 0.91023 1.05680 1.04596 1.20856 0.90835 0.82963 0.75350 1.90738 1.70881 1.31401 1.49592 1.45817 1.05974 1.10079 1.75821 1.21027 0.82313 0.94185 1.04876 1.20108 0.81235 0.91013 0.76559 1.90705 1.54302 1.46108 1.50894 1.48447 1.04648 1.09239 1.72208 1.22220 0.87429 0.91203 1.02009 1.22748 0.95068 0.95606 1.03076 1.22348 0.93148 0.95285 1.00605 0.89601 1.21668 0.95149 0.97503 1.01078 1.20621 0.87817 0.92729 0.96120 1.42365 1.06931 1.29701 1.58891 1.19184 0.86000 1.08100 1.23904 0.91249 1.24760 0.98338 0.97685 1.00315 1.69654 1.34677 1.15536 1.38380 0.86252 0.84880 0.76902 0.78052 1.21670 1.21274 1.21261 1.22417 0.93245 0.83889 1.01698 0.89159 0.88746 0.89163 0.74917 0.88343 0.88329 0.90986 0.90964 0.89891 0.89341 0.91468 0.91533 0.96240 0.96532 0.78310 0.93455 0.90187 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.32 36.00 0.37 -0.45 16 2 C 0.51 4.56 7.94 -10.99 -0.09 4.47 16 3 O -0.55 -7.10 17.09 5.56 0.09 -7.00 16 4 N -0.72 -6.04 5.53 -61.48 -0.34 -6.38 16 5 C 0.10 0.90 5.35 -5.19 -0.03 0.87 16 6 C 0.52 5.63 7.92 -10.99 -0.09 5.55 16 7 O -0.54 -7.40 15.92 5.55 0.09 -7.31 16 8 N -0.61 -6.22 3.33 -170.52 -0.57 -6.79 16 9 C 0.09 0.76 6.49 -3.07 -0.02 0.74 16 10 C -0.13 -1.21 5.59 -24.89 -0.14 -1.35 16 11 C -0.09 -1.06 3.07 -88.47 -0.27 -1.33 16 12 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 13 C -0.12 -1.69 4.84 -26.73 -0.13 -1.82 16 14 C 0.15 2.94 6.11 -4.04 -0.02 2.91 16 15 N -0.73 -18.43 5.60 -59.91 -0.34 -18.76 16 16 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 20 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.11 1.21 6.38 -2.53 -0.02 1.20 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.41 3.15 7.44 -40.82 -0.30 2.85 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16 34 H 0.09 0.81 8.13 -51.93 -0.42 0.38 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 37 H 0.02 0.37 7.50 -51.93 -0.39 -0.02 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 10.11 7.67 -40.82 -0.31 9.79 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 42 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -34.74 351.35 -7.61 -42.35 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.87 Total: 5.41 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.68 Total: 3.39 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.52 Total: -59.43 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.18 Total: -14.32 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.74 -7.61 -42.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672728836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.270 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds