Wall clock time and date at job start Tue Mar 31 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21277 * 120.00196 * 2 1 4 4 N 1.34772 * 120.00140 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00628 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.47628 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00188 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00075 * 180.02562 * 6 5 4 9 9 C 1.47019 * 125.64789 * 359.97157 * 8 6 5 10 10 C 1.54320 * 107.27236 * 181.10531 * 9 8 6 11 11 C 1.55166 * 102.94209 * 22.19556 * 10 9 8 12 12 H 1.08999 * 111.00205 * 82.60428 * 11 10 9 13 13 C 1.52992 * 111.00420 * 206.42346 * 11 10 9 14 14 C 1.53004 * 109.47319 * 293.54388 * 13 11 10 15 15 N 1.46499 * 109.47198 * 180.02562 * 14 13 11 16 16 C 1.36931 * 120.00122 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00098 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99535 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00187 * 180.27849 * 18 16 15 21 21 H 1.48497 * 109.47173 * 179.72427 * 20 18 16 22 22 H 1.48506 * 109.46866 * 299.71963 * 20 18 16 23 23 H 1.48501 * 109.47438 * 59.72083 * 20 18 16 24 24 C 1.47425 * 125.64641 * 180.02562 * 8 6 5 25 25 H 1.08995 * 109.47627 * 239.99884 * 1 2 3 26 26 H 1.09004 * 109.47170 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47170 * 119.99583 * 1 2 3 28 28 H 0.97001 * 120.00212 * 0.02562 * 4 2 1 29 29 H 1.09001 * 109.47092 * 59.99583 * 5 4 2 30 30 H 1.09003 * 109.46896 * 300.00477 * 5 4 2 31 31 H 1.08998 * 109.88094 * 61.69305 * 9 8 6 32 32 H 1.08997 * 110.01221 * 300.59932 * 9 8 6 33 33 H 1.08998 * 110.72428 * 263.83695 * 10 9 8 34 34 H 1.09001 * 110.87380 * 140.62892 * 10 9 8 35 35 H 1.09000 * 109.47364 * 173.54407 * 13 11 10 36 36 H 1.08998 * 109.47610 * 53.54470 * 13 11 10 37 37 H 1.08995 * 109.46638 * 60.00097 * 14 13 11 38 38 H 1.08998 * 109.46846 * 300.00550 * 14 13 11 39 39 H 0.97001 * 119.99790 * 359.97438 * 15 14 13 40 40 H 0.97005 * 119.99717 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36455 * 36.99069 * 24 8 6 42 42 H 1.08993 * 110.36942 * 274.66277 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 6 4.1482 -2.5881 -0.0010 7 8 3.3601 -3.5100 0.0000 8 7 5.4733 -2.8344 -0.0009 9 6 6.5340 -1.8164 -0.0015 10 6 7.8847 -2.5621 -0.0296 11 6 7.5044 -3.9481 -0.6144 12 1 7.4554 -3.9128 -1.7027 13 6 8.4826 -5.0276 -0.1471 14 6 9.8647 -4.7570 -0.7451 15 7 10.8012 -5.7911 -0.2980 16 6 12.1072 -5.7557 -0.7082 17 1 12.4469 -4.9652 -1.3610 18 6 12.9945 -6.7357 -0.2851 19 7 12.5805 -7.6989 0.5109 20 14 14.7778 -6.6830 -0.8384 21 1 15.5136 -7.8295 -0.2474 22 1 14.8391 -6.7662 -2.3199 23 1 15.3985 -5.4113 -0.3880 24 6 6.0990 -4.1692 -0.0013 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.6959 -2.0072 -0.0013 29 1 4.0096 -0.6536 0.8888 30 1 4.0088 -0.6532 -0.8911 31 1 6.4649 -1.2085 0.9006 32 1 6.4421 -1.1824 -0.8834 33 1 8.2889 -2.6662 0.9773 34 1 8.5966 -2.0519 -0.6785 35 1 8.1295 -6.0050 -0.4760 36 1 8.5482 -5.0123 0.9408 37 1 10.2178 -3.7797 -0.4161 38 1 9.7992 -4.7723 -1.8330 39 1 10.4963 -6.5004 0.2891 40 1 13.2007 -8.3836 0.8068 41 1 5.5211 -4.8589 -0.6165 42 1 6.1848 -4.5483 1.0169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672728836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:57 Heat of formation + Delta-G solvation = -95.258530 kcal Electronic energy + Delta-G solvation = -21550.881566 eV Core-core repulsion = 18143.657726 eV Total energy + Delta-G solvation = -3407.223840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.47421 -40.41090 -38.97746 -36.84592 -35.55234 -34.59978 -32.72853 -31.38280 -30.62497 -29.36583 -27.61437 -25.56957 -24.00546 -23.12433 -21.66266 -21.24323 -20.50502 -19.13513 -18.59728 -17.74020 -17.44628 -17.14884 -16.66892 -16.58369 -16.02024 -15.60596 -15.36425 -15.27092 -15.08650 -14.47234 -14.38891 -14.16743 -13.80272 -13.64249 -13.33950 -13.27859 -13.06735 -12.93944 -12.85823 -12.74377 -12.33890 -12.22844 -11.95830 -11.64855 -11.56311 -11.48759 -11.18678 -11.08758 -10.89626 -10.29942 -9.78029 -8.98575 -7.94537 -5.23397 1.36026 1.48072 1.51205 1.57341 1.58450 1.61455 2.35333 2.57064 3.22637 3.39184 3.56602 3.65163 3.81097 3.91454 4.15755 4.20392 4.29113 4.31790 4.35481 4.47518 4.55199 4.59908 4.62402 4.67253 4.78702 4.84989 4.88047 4.96962 5.01217 5.09613 5.19753 5.23817 5.29541 5.39885 5.47495 5.50817 6.28173 6.33778 6.45026 6.87029 7.14519 7.33952 8.11824 8.33250 9.28936 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.059901 B = 0.002252 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.328941 B =12432.414452 C =12769.930635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.509 3.491 3 O -0.594 6.594 4 N -0.718 5.718 5 C 0.107 3.893 6 C 0.523 3.477 7 O -0.576 6.576 8 N -0.612 5.612 9 C 0.095 3.905 10 C -0.125 4.125 11 C -0.085 4.085 12 H 0.090 0.910 13 C -0.103 4.103 14 C 0.153 3.847 15 N -0.751 5.751 16 C -0.246 4.246 17 H 0.077 0.923 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.975 3.025 21 H -0.296 1.296 22 H -0.278 1.278 23 H -0.276 1.276 24 C 0.112 3.888 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.417 0.583 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.018 0.982 39 H 0.373 0.627 40 H 0.251 0.749 41 H 0.070 0.930 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.710 15.622 -1.129 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.299 3.701 3 O -0.475 6.475 4 N -0.374 5.374 5 C -0.020 4.020 6 C 0.312 3.688 7 O -0.456 6.456 8 N -0.344 5.344 9 C -0.026 4.026 10 C -0.163 4.163 11 C -0.105 4.105 12 H 0.108 0.892 13 C -0.141 4.141 14 C 0.027 3.973 15 N -0.393 5.393 16 C -0.378 4.378 17 H 0.095 0.905 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.804 3.196 21 H -0.222 1.222 22 H -0.204 1.204 23 H -0.202 1.202 24 C -0.011 4.011 25 H 0.128 0.872 26 H 0.113 0.887 27 H 0.128 0.872 28 H 0.256 0.744 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.204 0.796 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.633 15.984 -1.219 27.735 hybrid contribution 0.971 -1.145 0.070 1.503 sum -21.663 14.839 -1.149 26.283 Atomic orbital electron populations 1.21932 0.87792 1.06341 1.06454 1.21575 0.92370 0.82149 0.74033 1.90715 1.72063 1.32832 1.51883 1.45883 1.05953 1.10302 1.75248 1.21031 0.82670 0.92616 1.05662 1.20430 0.81047 0.91474 0.75811 1.90689 1.55148 1.47242 1.52516 1.48497 1.04998 1.09293 1.71658 1.22359 0.85655 0.90694 1.03940 1.22746 0.96181 0.94544 1.02819 1.22179 0.92284 0.95194 1.00817 0.89161 1.21491 0.93590 0.98405 1.00596 1.20810 0.88866 0.91478 0.96172 1.42640 1.07164 1.30754 1.58782 1.19628 0.87317 1.07780 1.23081 0.90497 1.25615 1.02627 0.97774 1.01115 1.69818 1.35821 1.16405 1.40108 0.85188 0.79819 0.76826 0.77793 1.22244 1.20392 1.20221 1.22276 0.93014 0.84494 1.01281 0.87207 0.88722 0.87200 0.74406 0.87512 0.87443 0.89170 0.88985 0.90337 0.88496 0.92345 0.91815 0.95215 0.96448 0.79578 0.94034 0.91160 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.32 71.23 0.74 -0.50 16 2 C 0.51 8.38 7.94 87.66 0.70 9.08 16 3 O -0.59 -14.92 17.09 -3.02 -0.05 -14.97 16 4 N -0.72 -11.03 5.53 -466.80 -2.58 -13.61 16 5 C 0.11 1.69 5.35 85.63 0.46 2.15 16 6 C 0.52 10.58 7.92 87.66 0.69 11.28 16 7 O -0.58 -15.34 15.92 -3.05 -0.05 -15.39 16 8 N -0.61 -11.42 3.33 -811.80 -2.70 -14.12 16 9 C 0.10 1.28 6.49 86.73 0.56 1.84 16 10 C -0.13 -2.11 5.59 31.78 0.18 -1.93 16 11 C -0.09 -1.79 3.07 -9.40 -0.03 -1.82 16 12 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 13 C -0.10 -2.94 4.84 30.59 0.15 -2.79 16 14 C 0.15 5.69 6.11 86.38 0.53 6.21 16 15 N -0.75 -37.76 5.60 -343.46 -1.92 -39.68 16 16 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 19 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 20 Si 0.98 45.83 29.55 68.60 2.03 47.86 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.11 2.38 6.38 86.86 0.55 2.94 16 25 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.09 0.74 8.12 -2.39 -0.02 0.72 16 27 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.42 5.83 7.44 -92.71 -0.69 5.14 16 29 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.42 8.01 -2.39 -0.02 1.40 16 34 H 0.10 1.50 8.13 -2.39 -0.02 1.48 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16 37 H 0.03 1.07 7.50 -2.39 -0.02 1.05 16 38 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.37 20.01 7.67 -92.71 -0.71 19.30 16 40 H 0.25 14.94 8.31 -92.70 -0.77 14.16 16 41 H 0.07 1.64 8.04 -2.39 -0.02 1.62 16 42 H 0.07 1.55 8.04 -2.39 -0.02 1.53 16 Total: -1.00 -74.82 351.35 0.45 -74.36 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.38 Total: 25.24 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.83 Total: 9.53 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -6.92 Total: -126.63 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.10 Total: -30.36 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -74.82 0.45 -74.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672728836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.894 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds