Wall clock time and date at job start Tue Mar 31 2020 02:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21286 * 119.99611 * 2 1 4 4 N 1.34772 * 120.00637 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00658 * 179.97438 * 4 2 1 6 6 H 1.08997 * 108.72955 * 326.69582 * 5 4 2 7 7 C 1.50465 * 108.76879 * 84.99838 * 5 4 2 8 8 C 1.54506 * 108.84887 * 213.07648 * 7 5 4 9 9 C 1.45862 * 111.58848 * 282.80347 * 8 7 5 10 10 N 1.47800 * 112.91633 * 61.33150 * 9 8 7 11 11 C 1.46902 * 111.00116 * 153.86647 * 10 9 8 12 12 C 1.50702 * 109.47027 * 66.04353 * 11 10 9 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72353 * 12 11 10 15 15 C 1.37101 * 120.00327 * 180.27606 * 14 12 11 16 16 H 1.08001 * 119.99426 * 0.02562 * 15 14 12 17 17 C 1.38942 * 120.00412 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00042 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00013 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47118 * 89.99593 * 19 17 15 21 21 H 1.48494 * 109.47201 * 209.99761 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99735 * 19 17 15 23 23 C 1.44270 * 109.46333 * 276.73949 * 10 9 8 24 24 C 1.54065 * 111.98387 * 96.43668 * 23 10 9 25 25 H 1.09001 * 109.46819 * 269.99704 * 1 2 3 26 26 H 1.08996 * 109.47273 * 29.99881 * 1 2 3 27 27 H 1.09001 * 109.46742 * 150.00195 * 1 2 3 28 28 H 0.97008 * 119.99569 * 359.97438 * 4 2 1 29 29 H 1.08991 * 109.57649 * 93.26353 * 7 5 4 30 30 H 1.08996 * 109.57278 * 332.88056 * 7 5 4 31 31 H 1.09004 * 109.05576 * 162.26348 * 8 7 5 32 32 H 1.08998 * 109.06130 * 43.34895 * 8 7 5 33 33 H 1.08997 * 108.79528 * 300.44252 * 9 8 7 34 34 H 1.09004 * 108.79254 * 182.21610 * 9 8 7 35 35 H 1.09004 * 109.47131 * 306.04597 * 11 10 9 36 36 H 1.09000 * 109.47732 * 186.04708 * 11 10 9 37 37 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 38 38 H 0.97005 * 120.00014 * 180.02562 * 18 17 15 39 39 H 1.09000 * 108.97866 * 217.08194 * 23 10 9 40 40 H 1.09000 * 108.97689 * 335.79015 * 23 10 9 41 41 H 1.08998 * 108.92005 * 198.19164 * 24 23 10 42 42 H 1.09005 * 108.84195 * 79.59021 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 1 3.9958 -0.3042 -0.5678 7 6 4.1307 -1.0432 1.4180 8 6 5.4514 -0.2414 1.4262 9 6 6.5789 -1.0600 0.9948 10 7 6.4299 -1.5626 -0.3872 11 6 7.7408 -1.8212 -0.9976 12 6 8.4165 -2.9573 -0.2738 13 8 7.8605 -3.4986 0.6584 14 7 9.6360 -3.3760 -0.6664 15 6 10.2483 -4.4132 -0.0116 16 1 9.7532 -4.8952 0.8185 17 6 11.5058 -4.8445 -0.4159 18 7 12.0924 -5.8390 0.2114 19 14 12.3624 -4.0104 -1.8512 20 1 13.1848 -2.8809 -1.3482 21 1 13.2376 -4.9906 -2.5426 22 1 11.3455 -3.4966 -2.8037 23 6 5.6184 -2.7554 -0.3800 24 6 4.1422 -2.4507 -0.6986 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6960 -2.0072 -0.0005 29 1 4.3037 -2.0361 1.8328 30 1 3.3829 -0.5212 2.0149 31 1 5.6411 0.1216 2.4363 32 1 5.3539 0.6120 0.7551 33 1 6.6737 -1.9108 1.6695 34 1 7.4893 -0.4637 1.0553 35 1 8.3583 -0.9259 -0.9252 36 1 7.6073 -2.0867 -2.0463 37 1 10.0805 -2.9433 -1.4121 38 1 12.9705 -6.1398 -0.0706 39 1 6.0053 -3.4517 -1.1241 40 1 5.6801 -3.2202 0.6040 41 1 3.5293 -3.2904 -0.3710 42 1 4.0319 -2.3325 -1.7766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673352990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:58 Heat of formation + Delta-G solvation = -93.621246 kcal Electronic energy + Delta-G solvation = -23036.249395 eV Core-core repulsion = 19629.096553 eV Total energy + Delta-G solvation = -3407.152842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40163 -40.56079 -38.99702 -36.51649 -35.74675 -34.09282 -33.76800 -32.79537 -30.52330 -29.08127 -27.00030 -25.74524 -25.02291 -21.85608 -21.50713 -21.34071 -21.01503 -20.01526 -17.84636 -17.71358 -17.54151 -16.83586 -16.70408 -16.21623 -16.06898 -15.67793 -15.35765 -15.28146 -14.91189 -14.56736 -14.36092 -14.08154 -14.07927 -13.67055 -13.37062 -13.14594 -12.97397 -12.79157 -12.49071 -12.41582 -12.16468 -12.00566 -11.93223 -11.88613 -11.57369 -11.54510 -11.29063 -10.93026 -10.79878 -10.25020 -10.01537 -9.16089 -8.43747 -6.03958 1.29387 1.33839 1.42993 1.73981 1.91781 2.21090 2.36536 2.91099 2.96928 3.13759 3.72932 3.89762 3.99356 4.09805 4.19268 4.24012 4.35819 4.42750 4.45077 4.48255 4.57419 4.63451 4.71209 4.78070 4.90726 4.93422 5.01923 5.09819 5.11689 5.22571 5.24973 5.37262 5.43598 5.51449 5.65025 5.91349 5.99537 6.12759 6.56291 6.68655 6.86240 7.37521 7.38008 7.92779 8.73751 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.043680 B = 0.003308 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.873246 B = 8462.832763 C = 8481.452861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.500 3.500 3 O -0.601 6.601 4 N -0.719 5.719 5 C 0.159 3.841 6 H 0.070 0.930 7 C -0.117 4.117 8 C -0.103 4.103 9 C 0.053 3.947 10 N -0.496 5.496 11 C 0.046 3.954 12 C 0.419 3.581 13 O -0.613 6.613 14 N -0.589 5.589 15 C -0.326 4.326 16 H 0.055 0.945 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.259 1.259 21 H -0.276 1.276 22 H -0.230 1.230 23 C 0.065 3.935 24 C -0.103 4.103 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.413 0.587 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.061 0.939 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.389 0.611 38 H 0.279 0.721 39 H 0.052 0.948 40 H 0.036 0.964 41 H 0.082 0.918 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.755 10.907 -5.600 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.289 3.711 3 O -0.482 6.482 4 N -0.371 5.371 5 C 0.054 3.946 6 H 0.088 0.912 7 C -0.155 4.155 8 C -0.141 4.141 9 C -0.075 4.075 10 N -0.218 5.218 11 C -0.086 4.086 12 C 0.206 3.794 13 O -0.499 6.499 14 N -0.231 5.231 15 C -0.456 4.456 16 H 0.073 0.927 17 C -0.214 4.214 18 N -0.575 5.575 19 Si 0.783 3.217 20 H -0.183 1.183 21 H -0.201 1.201 22 H -0.153 1.153 23 C -0.065 4.065 24 C -0.142 4.142 25 H 0.125 0.875 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.250 0.750 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.101 0.899 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.802 11.510 -5.251 23.498 hybrid contribution 1.456 -1.232 0.228 1.921 sum -18.346 10.279 -5.023 21.620 Atomic orbital electron populations 1.21896 0.88321 1.06105 1.05997 1.21614 0.92250 0.82968 0.74248 1.90709 1.72184 1.33253 1.52045 1.46345 1.07075 1.09253 1.74447 1.20579 0.79266 0.99149 0.95624 0.91164 1.21670 0.96931 1.00081 0.96864 1.20443 0.93963 0.98398 1.01335 1.21021 0.98780 0.98510 0.89154 1.62188 1.11248 1.29359 1.19016 1.22476 0.90426 0.96064 0.99643 1.22241 0.82297 0.88046 0.86826 1.90533 1.65416 1.60993 1.32943 1.42224 1.17446 1.31810 1.31591 1.18998 1.01116 1.10855 1.14588 0.92678 1.26118 0.96794 0.96916 1.01577 1.69805 1.16648 1.28092 1.42960 0.85383 0.79405 0.78788 0.78092 1.18329 1.20116 1.15334 1.21764 0.93088 0.90818 1.00813 1.22139 0.94559 0.96472 1.01002 0.87489 0.89134 0.87423 0.74958 0.92287 0.91981 0.90989 0.91593 0.95137 0.92072 0.86393 0.86069 0.77538 0.91182 0.92989 0.94519 0.89934 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.30 71.24 0.73 -0.86 16 2 C 0.50 10.03 7.71 87.66 0.68 10.71 16 3 O -0.60 -18.49 16.71 -3.05 -0.05 -18.54 16 4 N -0.72 -12.35 4.92 -444.37 -2.19 -14.54 16 5 C 0.16 3.63 2.10 44.61 0.09 3.72 16 6 H 0.07 2.00 6.72 -2.39 -0.02 1.98 16 7 C -0.12 -2.91 5.25 30.29 0.16 -2.75 16 8 C -0.10 -2.77 5.53 28.92 0.16 -2.61 16 9 C 0.05 1.65 4.23 83.94 0.36 2.01 16 10 N -0.50 -14.84 4.45 -916.39 -4.08 -18.92 16 11 C 0.05 1.38 5.57 85.56 0.48 1.86 16 12 C 0.42 18.03 6.99 87.66 0.61 18.64 16 13 O -0.61 -31.56 11.96 -3.07 -0.04 -31.59 16 14 N -0.59 -27.14 5.09 -306.98 -1.56 -28.70 16 15 C -0.33 -18.80 10.16 84.04 0.85 -17.94 16 16 H 0.06 3.79 7.39 -2.91 -0.02 3.77 16 17 C -0.02 -0.85 5.50 84.92 0.47 -0.38 16 18 N -0.93 -56.08 13.96 21.66 0.30 -55.78 16 19 Si 0.96 38.57 27.74 68.60 1.90 40.47 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 21 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.23 -7.72 6.52 99.48 0.65 -7.08 16 23 C 0.06 1.96 3.75 87.15 0.33 2.29 16 24 C -0.10 -2.25 5.69 31.39 0.18 -2.08 16 25 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.41 4.26 8.47 -92.70 -0.78 3.47 16 29 H 0.06 1.54 7.15 -2.39 -0.02 1.52 16 30 H 0.06 1.53 7.79 -2.39 -0.02 1.51 16 31 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.07 1.82 7.59 -2.39 -0.02 1.80 16 33 H 0.03 1.17 5.91 -2.39 -0.01 1.15 16 34 H 0.06 1.88 7.64 -2.38 -0.02 1.86 16 35 H 0.12 3.01 7.89 -2.38 -0.02 2.99 16 36 H 0.12 3.04 8.13 -2.39 -0.02 3.02 16 37 H 0.39 14.93 5.76 -92.71 -0.53 14.39 16 38 H 0.28 15.31 8.31 -92.70 -0.77 14.54 16 39 H 0.05 1.68 7.29 -2.39 -0.02 1.67 16 40 H 0.04 1.34 5.46 -2.39 -0.01 1.33 16 41 H 0.08 1.48 7.93 -2.39 -0.02 1.46 16 42 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -78.81 328.46 -0.95 -79.76 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -0.34 Total: 35.22 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 5.09 Total: 12.62 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -7.52 Total: -117.94 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -0.09 Total: -50.13 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.90 Total: 40.47 kcal Total: -78.81 -0.95 -79.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673352990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.858 kcal (2) G-P(sol) polarization free energy of solvation -78.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds